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author:"Paramitha D"

Filter By

Current Database

  • EMDB [3]

Current status

  • REL [3]

Sample type

  • Complex [3]
  • Ligand [3]
  • Protein [3]

Organism

  • Vicugna pacos [3]
  • Severe acute respiratory syndrome coronavirus [2]
  • Nipah virus [1]

EM Method

  • Single-particle [3]

Resolution

  • ≥ 3Å and < 4Å [1]
  • ≥ 5Å and < 6Å [1]
  • ≥ 6Å and < 8Å [1]

Model molecular weight

  • 100-250 kDa [1]
  • 250-500 kDa [2]

Release Date

  • 2025 [1]
  • 2023 [2]

Author by name

  • Bailey D [3]
  • Himelreichs J [3]
  • Isaacs A [3]
  • Jara R [3]
  • Jones ML [3]
  • Khromykh AA [3]
  • Low YS [3]
  • Modhiran N [3]
  • Nieto GV [3]
  • Paramitha D [3]
  • Rojas-fernandez A [3]
  • Thakur N [3]
  • Watterson D [3]
  • Young PR [3]
  • Amarilla AA [2]
  • Andersen IV [2]
  • Burger J [2]
  • Chana-cuevas P [2]
  • Chappell K [2]
  • Cheuquemilla Y [2]
  • Herth MM [2]
  • Hewins P [2]
  • Jorgensen JT [2]
  • Jung J [2]
  • Jurado KA [2]
  • Kjaer A [2]
  • Kramer V [2]
  • Lauer S [2]
  • Lauer SM [2]
  • Liang B [2]
  • Lopes Van Den Broek Si [2]
  • Macloughlin R [2]
  • Mielke T [2]
  • Miranda-chacon Z [2]
  • Munro T [2]
  • Schwefel D [2]
  • Sng JDJ [2]
  • Song D [2]
  • Spahn C [2]
  • Spahn CMT [2]
  • Barnes JB [1]
  • Barr J [1]
  • Barthou-gatica B [1]
  • Chappell KJ [1]
  • Chiu S [1]
  • Deride C [1]
  • Ehrenfeld P [1]
  • Hayes N [1]
  • Hen JJ [1]
  • Marsh GA [1]
  • Mcmillan CLD [1]
  • Morgan MS [1]
  • Munro TP [1]
  • Parry RH [1]
  • Reading PC [1]
  • Salinas-rebolledo C [1]
  • Shi Y [1]
  • Yao Y [1]
  • Zhang X [1]

Author by ORCID

  • Jones ML [3]
  • Rojas-fernandez A [3]
  • Kjaer A [2]
  • Schwefel D [2]
  • Lopes Van Den Broek Si [2]
  • Miranda-chacon Z [2]
  • Liang B [2]
  • Lauer SM [2]
  • Andersen IV [2]
  • Jara R [2]
  • Barr J [1]
  • Watterson D [1]
  • Chappell KJ [1]
  • Chiu S [1]
  • Parry RH [1]
  • Low YS [1]
  • Nieto GV [1]
  • Shi Y [1]
  • Marsh GA [1]
  • Morgan MS [1]
  • Bailey D [1]
  • Yao Y [1]
  • Isaacs A [1]
  • Reading PC [1]
  • Modhiran N [1]
  • Hayes N [1]

Journal

  • ISCIENCE [2]
  • NAT STRUCT MOL BIOL [1]

Software

  • CRYOSPARC [3]
  • CTFFIND [2]
  • RELION [1]

Microscope

  • JEOL CRYO ARM 300 [2]
  • FEI POLARA 300 [1]

Electron Source

  • FIELD EMISSION GUN [3]

Film or detector model

  • GATAN K3 6K X 4K [2]
  • GATAN K2 SUMMIT 4K X 4K [1]

External links

  • ChEBI [3]
  • ChEMBL [3]
  • PDB [3]
  • PDBe-Kb [3]
  • UniProt [3]
  • Complex Portal [2]
  • Gene Ontology [2]
  • InterPro [2]
  • Pfam [2]
Sort by: Download
Showing 1 - 3 of 3. Page 1 of 1
Display:
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EMD-44380
Download Map
3D View
Prefusion F glycoprotein ectodomain of Nipah virus ectodomain in complex with DS90 nanobody
Release date: June 4, 2025
Resolution: 3.66 Å
EM Method: Single-particle
Fitted PDBs: 9b9e
Q-score: 0.484

Isaacs A, Nieto GV, Zhang X, Modhiran N, Barr J, Thakur N, Low YS, Parry RH, Barnes JB, Jara R, Himelreichs J, Yao Y, Deride C, Barthou-Gatica B, Salinas-Rebolledo C, Ehrenfeld P, Hen JJ, Hayes N, Paramitha D, Morgan MS, McMillan CLD, Jones ML, Munro TP, Khromykh AA, Reading PC, Young PR, Chappell KJ, Shi Y, Bailey D, Marsh GA, Chiu S, Rojas-Fernandez A, Watterson D

Nat Struct Mol Biol (2025) 32 pp. 1920-1931 [ DOI: doi:10.1038/s41594-025-01598-2 Pubmed: 40629166 ]

EMD-16010
Download Map
3D View
Cryo-EM structure of SARS-CoV-2 spike HexaPro variant in complex with nanobody W25 map 3, focus refinement on RBD, W25 and adjacent NTD
Release date: March 8, 2023
Resolution: 5.92 Å
EM Method: Single-particle
Fitted PDBs: 8bev
Q-score: 0.203

Modhiran N, Lauer SM, Amarilla AA, Hewins P, Lopes van den Broek SI, Low YS, Thakur N, Liang B, Nieto GV, Jung J, Paramitha D, Isaacs A, Sng JDJ, Song D, Jorgensen JT, Cheuquemilla Y, Burger J, Andersen IV, Himelreichs J, Jara R, MacLoughlin R, Miranda-Chacon Z, Chana-Cuevas P, Kramer V, Spahn C, Mielke T, Khromykh AA, Munro T, Jones ML, Young PR, Chappell K, Bailey D, Kjaer A, Herth MM, Jurado KA, Schwefel D, Rojas-Fernandez A, Watterson D

iScience (2023) 26 pp. 107085-107085 [ DOI: doi:10.1016/j.isci.2023.107085 Pubmed: 37361875 ]

EMD-16030
Download Map
3D View
Cryo-EM structure of SARS-CoV-2 spike Omicron BA.1 variant in complex with nanobody W25 map 5, focus refinement on RBD, W25 and adjacent NTD
Release date: March 8, 2023
Resolution: 6.04 Å
EM Method: Single-particle
Fitted PDBs: 8bgg
Q-score: 0.168

Modhiran N, Lauer SM, Amarilla AA, Hewins P, Lopes van den Broek SI, Low YS, Thakur N, Liang B, Nieto GV, Jung J, Paramitha D, Isaacs A, Sng JDJ, Song D, Jorgensen JT, Cheuquemilla Y, Burger J, Andersen IV, Himelreichs J, Jara R, MacLoughlin R, Miranda-Chacon Z, Chana-Cuevas P, Kramer V, Spahn C, Mielke T, Khromykh AA, Munro T, Jones ML, Young PR, Chappell K, Bailey D, Kjaer A, Herth MM, Jurado KA, Schwefel D, Rojas-Fernandez A, Watterson D

iScience (2023) 26 pp. 107085-107085 [ DOI: doi:10.1016/j.isci.2023.107085 Pubmed: 37361875 ]

Sort by: Download
Showing 1 - 3 of 3. Page 1 of 1
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [3]

Current status

  • REL [3]

Sample type

  • Complex [3]
  • Ligand [3]
  • Protein [3]

Organism

  • Vicugna pacos [3]
  • Severe acute respiratory syndrome coronavirus [2]
  • Nipah virus [1]

EM Method

  • Single-particle [3]

Resolution

  • ≥ 3Å and < 4Å [1]
  • ≥ 5Å and < 6Å [1]
  • ≥ 6Å and < 8Å [1]

Model molecular weight

  • 100-250 kDa [1]
  • 250-500 kDa [2]

Release Date

  • 2025 [1]
  • 2023 [2]

Author by name

  • Bailey D [3]
  • Himelreichs J [3]
  • Isaacs A [3]
  • Jara R [3]
  • Jones ML [3]
  • Khromykh AA [3]
  • Low YS [3]
  • Modhiran N [3]
  • Nieto GV [3]
  • Paramitha D [3]
  • Rojas-fernandez A [3]
  • Thakur N [3]
  • Watterson D [3]
  • Young PR [3]
  • Amarilla AA [2]
  • Andersen IV [2]
  • Burger J [2]
  • Chana-cuevas P [2]
  • Chappell K [2]
  • Cheuquemilla Y [2]
  • Herth MM [2]
  • Hewins P [2]
  • Jorgensen JT [2]
  • Jung J [2]
  • Jurado KA [2]
  • Kjaer A [2]
  • Kramer V [2]
  • Lauer S [2]
  • Lauer SM [2]
  • Liang B [2]
  • Lopes Van Den Broek Si [2]
  • Macloughlin R [2]
  • Mielke T [2]
  • Miranda-chacon Z [2]
  • Munro T [2]
  • Schwefel D [2]
  • Sng JDJ [2]
  • Song D [2]
  • Spahn C [2]
  • Spahn CMT [2]
  • Barnes JB [1]
  • Barr J [1]
  • Barthou-gatica B [1]
  • Chappell KJ [1]
  • Chiu S [1]
  • Deride C [1]
  • Ehrenfeld P [1]
  • Hayes N [1]
  • Hen JJ [1]
  • Marsh GA [1]
  • Mcmillan CLD [1]
  • Morgan MS [1]
  • Munro TP [1]
  • Parry RH [1]
  • Reading PC [1]
  • Salinas-rebolledo C [1]
  • Shi Y [1]
  • Yao Y [1]
  • Zhang X [1]

Author by ORCID

  • Jones ML [3]
  • Rojas-fernandez A [3]
  • Kjaer A [2]
  • Schwefel D [2]
  • Lopes Van Den Broek Si [2]
  • Miranda-chacon Z [2]
  • Liang B [2]
  • Lauer SM [2]
  • Andersen IV [2]
  • Jara R [2]
  • Barr J [1]
  • Watterson D [1]
  • Chappell KJ [1]
  • Chiu S [1]
  • Parry RH [1]
  • Low YS [1]
  • Nieto GV [1]
  • Shi Y [1]
  • Marsh GA [1]
  • Morgan MS [1]
  • Bailey D [1]
  • Yao Y [1]
  • Isaacs A [1]
  • Reading PC [1]
  • Modhiran N [1]
  • Hayes N [1]

Journal

  • ISCIENCE [2]
  • NAT STRUCT MOL BIOL [1]

Software

  • CRYOSPARC [3]
  • CTFFIND [2]
  • RELION [1]

Microscope

  • JEOL CRYO ARM 300 [2]
  • FEI POLARA 300 [1]

Electron Source

  • FIELD EMISSION GUN [3]

Film or detector model

  • GATAN K3 6K X 4K [2]
  • GATAN K2 SUMMIT 4K X 4K [1]

External links

  • ChEBI [3]
  • ChEMBL [3]
  • PDB [3]
  • PDBe-Kb [3]
  • UniProt [3]
  • Complex Portal [2]
  • Gene Ontology [2]
  • InterPro [2]
  • Pfam [2]