EMD-16030

Single-particle
6.04 Å
EMD-16030
3D View Gallery
Deposition: 27/10/2022
Map released: 08/03/2023
Last modified: 16/07/2025
Overview 3D View Sample Experiment Validation Additional data Links
Overview 3D View Sample Experiment Validation Additional data Links

EMD-16030

Archive Files (Depositor)

Primary 3D volume (map.gz) Half-map 1 Half-map 2 (map.gz) Experimental metadata (xml) Experimental metadata (cif.gz)

Validation (wwPDB)

Map-only validation report (pdf.gz) Map-8bgg summary report (pdf.gz) Map-8bgg FULL report (pdf.gz)

EMDB Annotations

EMICSS entry mapping (xml)

EMDB Files

VA raw map (map) VA resolution mask (mrc)

Cryo-EM structure of SARS-CoV-2 spike (Omicron BA.1 variant) in complex with nanobody W25 (map 5, focus refinement on RBD, W25 and adjacent NTD)

EMD-16030

Single-particle
6.04 Å
EMD-16030
3D View Gallery
Deposition: 27/10/2022
Map released: 08/03/2023
Last modified: 16/07/2025
Overview 3D View Sample Experiment Validation Additional data Links
Sample Organism: Severe acute respiratory syndrome coronavirus 2, Vicugna pacos
Sample: SARS-CoV-2 spike (Omicron BA.1 variant) in complex with nanobody W25
Fitted models: 8bgg

Deposition Authors: Modhiran N , Lauer S , Spahn CMT , Watterson D , Schwefel D
A nanobody recognizes a unique conserved epitope and potently neutralizes SARS-CoV-2 omicron variants.
Modhiran N , Lauer SM , Amarilla AA, Hewins P, Lopes van den Broek SI , Low YS, Thakur N, Liang B , Nieto GV, Jung J, Paramitha D, Isaacs A, Sng JDJ, Song D, Jorgensen JT, Cheuquemilla Y, Burger J, Andersen IV , Himelreichs J, Jara R , MacLoughlin R, Miranda-Chacon Z , Chana-Cuevas P, Kramer V, Spahn C, Mielke T, Khromykh AA, Munro T, Jones ML , Young PR, Chappell K, Bailey D, Kjaer A , Herth MM, Jurado KA, Schwefel D , Rojas-Fernandez A , Watterson D
(2023) iScience , 26 , 107085 - 107085
PUBMED: 37361875
DOI: doi:10.1016/j.isci.2023.107085
ISSN: 2589-0042