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author:"Bunker RD"

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Current Database

  • EMDB [18]

Current status

  • REL [18]

Sample type

  • Protein [18]
  • Complex [13]
  • DNA [10]
  • Ligand [5]
  • Sample [5]

Organism

  • Homo sapiens [18]
  • Synthetic construct [3]
  • Danio rerio [1]

EM Method

  • Single-particle [18]

Resolution

  • ≥ 2Å and < 3Å [1]
  • ≥ 3Å and < 4Å [7]
  • ≥ 4Å and < 5Å [5]
  • ≥ 6Å and < 8Å [2]
  • ≥ 8Å and < 12Å [2]
  • ≥ 20Å and < 30Å [1]

Model molecular weight

  • 100-250 kDa [5]
  • 250-500 kDa [8]

Release Date

  • 2025 [2]
  • 2020 [3]
  • 2019 [8]
  • 2016 [5]

Author by name

  • Bunker RD [18]
  • Cavadini S [16]
  • Thoma NH [16]
  • Matsumoto S [15]
  • Potenza A [12]
  • Sugasawa K [12]
  • Schenk AD [11]
  • Grand RS [10]
  • Schubeler D [10]
  • Rabl J [8]
  • Iwai S [7]
  • Kurumizaka H [7]
  • Yamamoto J [7]
  • Abdulrahman W [6]
  • Hassiepen U [6]
  • Beckwith REJ [5]
  • Faty M [5]
  • Fischer ES [5]
  • Goldie KN [5]
  • Lingaraju GM [5]
  • Mohamed WI [5]
  • Pantelic RS [5]
  • Petzold G [5]
  • Stahlberg H [5]
  • Tichkule R [5]
  • Burger L [3]
  • Graff-meyer A [3]
  • Isbel L [3]
  • Kempf G [3]
  • Kozicka Z [3]
  • Michael AK [3]
  • Pathare GR [3]
  • Weiss J [3]
  • Annunziato S [2]
  • Bonenfant D [2]
  • Castle JC [2]
  • Chami M [2]
  • Demarco B [2]
  • Donckele EJ [2]
  • Fasching B [2]
  • Gainza P [2]
  • Hunkeler M [2]
  • Jones KFM [2]
  • Kapsitidou D [2]
  • Langousis G [2]
  • Lumb KJ [2]
  • Quan C [2]
  • Townson S [2]
  • Townson SA [2]
  • Wiedmer L [2]
  • Aguirre JD [1]
  • Andres-pons A [1]
  • Bouwmeester T [1]
  • Branigan E [1]
  • Gelman L [1]
  • Gill ME [1]
  • Guerillon C [1]
  • Hay RT [1]
  • Ibrahim AFM [1]
  • Julius R [1]
  • Luijsterburg MS [1]
  • Mailand N [1]
  • Marceau AH [1]
  • Peters AHFM [1]
  • Renatus M [1]
  • Rubin SM [1]
  • Van Attikum H [1]

Author by ORCID

  • Bunker RD [16]
  • Matsumoto S [12]
  • Thoma NH [12]
  • Schenk AD [11]
  • Grand RS [10]
  • Rabl J [8]
  • Petzold G [5]
  • Fischer ES [5]
  • Stahlberg H [5]
  • Schubeler D [3]
  • Weiss J [3]
  • Graff-meyer A [3]
  • Kempf G [3]
  • Pathare GR [3]
  • Matsumoto S [3]
  • Isbel L [3]
  • Michael AK [3]
  • Burger L [3]
  • Thoma NH [3]
  • Kozicka Z [3]
  • Cavadini S [3]
  • Gainza P [2]
  • Townson SA [2]
  • Hunkeler M [2]
  • Lumb KJ [2]
  • Quan C [2]
  • Andres-pons A [1]
  • Aguirre JD [1]
  • Peters AHFM [1]
  • Rubin SM [1]
  • Guerillon C [1]
  • Gill ME [1]
  • Gelman L [1]

Journal

  • NATURE [12]
  • SCIENCE [3]
  • NAT COMMUN [2]
  • MOL CELL [1]

Software

  • RELION [9]
  • EMAN2, RELION [4]
  • CRYOSPARC [3]
  • CTFFIND [2]
  • EMAN2, SPARX, RELION [1]

Microscope

  • FEI TITAN KRIOS [15]
  • TFS KRIOS [2]
  • FEI/PHILIPS CM200FEG [1]

Electron Source

  • FIELD EMISSION GUN [18]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [12]
  • GATAN K2 QUANTUM 4K X 4K [3]
  • TFS FALCON 4I 4K X 4K [2]
  • TVIPS TEMCAM-F416 4K X 4K [1]

External links

  • AlphaFold DB [18]
  • PDBe-Kb [18]
  • UniProt [18]
  • Complex Portal [13]
  • Gene Ontology [13]
  • PDB [13]
  • Pfam [13]
  • InterPro [11]
  • ChEBI [5]
  • ChEMBL [5]
  • DrugBank [5]
  • SCOP2 [1]
Sort by: Download
Showing 1 - 10 of 18. Page 1 of 2
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EMD-52330
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3D View
Cryo-EM structure of DDB1dB-CRBN-MRT-0031619, conformation 1
Release date: Dec. 3, 2025
Resolution: 2.93 Å
EM Method: Single-particle
Fitted PDBs: 9hpi
Q-score: 0.544

Langousis G, Gainza P, Hunkeler M, Kapsitidou D, Donckele EJ, Annunziato S, Wiedmer L, Jones KFM, DeMarco B, Quan C, Bunker RD, Lumb KJ, Fasching B, Castle JC, Townson SA, Bonenfant D

Nat Commun (2025) 16 pp. 10157-10157 [ Pubmed: 41258141 DOI: doi:10.1038/s41467-025-65094-3 ]

EMD-52331
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3D View
Cryo-EM structure of DDB1dB-CRBN-MRT-0031619, conformation 2
Release date: Dec. 3, 2025
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 9hpj
Q-score: 0.51

Langousis G, Gainza P, Hunkeler M, Kapsitidou D, Donckele EJ, Annunziato S, Wiedmer L, Jones KFM, DeMarco B, Quan C, Bunker RD, Lumb KJ, Fasching B, Castle JC, Townson SA, Bonenfant D

Nat Commun (2025) 16 pp. 10157-10157 [ Pubmed: 41258141 DOI: doi:10.1038/s41467-025-65094-3 ]

EMD-10406
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3D View
OCT4-SOX2-bound nucleosome - SHL-6
Release date: May 6, 2020
Resolution: 3.05 Å
EM Method: Single-particle
Fitted PDBs: 6t90
Q-score: 0.451

Michael AK, Grand RS, Isbel L, Cavadini S, Kozicka Z, Kempf G, Bunker RD, Schenk AD, Graff-Meyer A, Pathare GR, Weiss J, Matsumoto S, Burger L, Schubeler D, Thoma NH

Science (2020) 368 pp. 1460-1465 [ Pubmed: 32327602 DOI: doi:10.1126/science.abb0074 ]

EMD-10408
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Nucleosome with OCT4-SOX2 motif at SHL-6
Release date: May 6, 2020
Resolution: 3.49 Å
EM Method: Single-particle
Fitted PDBs: 6t93
Q-score: 0.419

Michael AK, Grand RS, Isbel L, Cavadini S, Kozicka Z, Kempf G, Bunker RD, Schenk AD, Graff-Meyer A, Pathare GR, Weiss J, Matsumoto S, Burger L, Schubeler D, Thoma NH

Science (2020) 368 pp. 1460-1465 [ Pubmed: 32327602 DOI: doi:10.1126/science.abb0074 ]

EMD-10864
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3D View
OCT4-SOX2-bound nucleosome - SHL 6
Release date: May 6, 2020
Resolution: 3.42 Å
EM Method: Single-particle
Fitted PDBs: 6yov
Q-score: 0.35

Michael AK, Grand RS, Isbel L, Cavadini S, Kozicka Z, Kempf G, Bunker RD, Schenk AD, Graff-Meyer A, Pathare GR, Weiss J, Matsumoto S, Burger L, Schubeler D, Thoma NH

Science (2020) 368 pp. 1460-1465 [ Pubmed: 32327602 DOI: doi:10.1126/science.abb0074 ]

EMD-0132
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3D View
Cryo-EM structure of the BRISC complex bound to SHMT2
Release date: July 10, 2019
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 6h3c
Q-score: 0.278

Rabl J, Bunker RD, Schenk AD, Cavadini S, Gill ME, Abdulrahman W, Andres-Pons A, Luijsterburg MS, Ibrahim AFM, Branigan E, Aguirre JD, Marceau AH, Guerillon C, Bouwmeester T, Hassiepen U, Peters AHFM, Renatus M, Gelman L, Rubin SM, Mailand N, van Attikum H, Hay RT, Thoma NH

Mol Cell (2019) 75 pp. 483-497.e9 [ DOI: doi:10.1016/j.molcel.2019.06.002 Pubmed: 31253574 ]

EMD-4762
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Cryo-EM structure of NCP-6-4PP -1 -UV-DDB
Release date: June 12, 2019
Resolution: 4.3 Å
EM Method: Single-particle
Fitted PDBs: 6r8y
Q-score: 0.313

Matsumoto S, Cavadini S, Bunker RD, Grand RS, Potenza A, Rabl J, Yamamoto J, Schenk AD, Schubeler D, Iwai S, Sugasawa K, Kurumizaka H, Thoma NH

Nature (2019) 571 pp. 79-84 [ Pubmed: 31142837 DOI: doi:10.1038/s41586-019-1259-3 ]

EMD-4763
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3D View
Cryo-EM structure of NCP_THF2 -1 -UV-DDB
Release date: June 12, 2019
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 6r8z
Q-score: 0.307

Matsumoto S, Cavadini S, Bunker RD, Grand RS, Potenza A, Rabl J, Yamamoto J, Schenk AD, Schubeler D, Iwai S, Sugasawa K, Kurumizaka H, Thoma NH

Nature (2019) 571 pp. 79-84 [ Pubmed: 31142837 DOI: doi:10.1038/s41586-019-1259-3 ]

EMD-4764
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3D View
Cryo-EM structure of NCP-THF2 1 -UV-DDB class A
Release date: June 12, 2019
Resolution: 4.5 Å
EM Method: Single-particle
Fitted PDBs: 6r90
Q-score: 0.278

Matsumoto S, Cavadini S, Bunker RD, Grand RS, Potenza A, Rabl J, Yamamoto J, Schenk AD, Schubeler D, Iwai S, Sugasawa K, Kurumizaka H, Thoma NH

Nature (2019) 571 pp. 79-84 [ Pubmed: 31142837 DOI: doi:10.1038/s41586-019-1259-3 ]

EMD-4765
Download Map
3D View
Cryo-EM structure of NCP_THF2 -3 -UV-DDB
Release date: June 12, 2019
Resolution: 4.1 Å
EM Method: Single-particle
Fitted PDBs: 6r91
Q-score: 0.212

Matsumoto S, Cavadini S, Bunker RD, Grand RS, Potenza A, Rabl J, Yamamoto J, Schenk AD, Schubeler D, Iwai S, Sugasawa K, Kurumizaka H, Thoma NH

Nature (2019) 571 pp. 79-84 [ Pubmed: 31142837 DOI: doi:10.1038/s41586-019-1259-3 ]

Sort by: Download
Showing 1 - 10 of 18. Page 1 of 2
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [18]

Current status

  • REL [18]

Sample type

  • Protein [18]
  • Complex [13]
  • DNA [10]
  • Ligand [5]
  • Sample [5]

Organism

  • Homo sapiens [18]
  • Synthetic construct [3]
  • Danio rerio [1]

EM Method

  • Single-particle [18]

Resolution

  • ≥ 2Å and < 3Å [1]
  • ≥ 3Å and < 4Å [7]
  • ≥ 4Å and < 5Å [5]
  • ≥ 6Å and < 8Å [2]
  • ≥ 8Å and < 12Å [2]
  • ≥ 20Å and < 30Å [1]

Model molecular weight

  • 100-250 kDa [5]
  • 250-500 kDa [8]

Release Date

  • 2025 [2]
  • 2020 [3]
  • 2019 [8]
  • 2016 [5]

Author by name

  • Bunker RD [18]
  • Cavadini S [16]
  • Thoma NH [16]
  • Matsumoto S [15]
  • Potenza A [12]
  • Sugasawa K [12]
  • Schenk AD [11]
  • Grand RS [10]
  • Schubeler D [10]
  • Rabl J [8]
  • Iwai S [7]
  • Kurumizaka H [7]
  • Yamamoto J [7]
  • Abdulrahman W [6]
  • Hassiepen U [6]
  • Beckwith REJ [5]
  • Faty M [5]
  • Fischer ES [5]
  • Goldie KN [5]
  • Lingaraju GM [5]
  • Mohamed WI [5]
  • Pantelic RS [5]
  • Petzold G [5]
  • Stahlberg H [5]
  • Tichkule R [5]
  • Burger L [3]
  • Graff-meyer A [3]
  • Isbel L [3]
  • Kempf G [3]
  • Kozicka Z [3]
  • Michael AK [3]
  • Pathare GR [3]
  • Weiss J [3]
  • Annunziato S [2]
  • Bonenfant D [2]
  • Castle JC [2]
  • Chami M [2]
  • Demarco B [2]
  • Donckele EJ [2]
  • Fasching B [2]
  • Gainza P [2]
  • Hunkeler M [2]
  • Jones KFM [2]
  • Kapsitidou D [2]
  • Langousis G [2]
  • Lumb KJ [2]
  • Quan C [2]
  • Townson S [2]
  • Townson SA [2]
  • Wiedmer L [2]
  • Aguirre JD [1]
  • Andres-pons A [1]
  • Bouwmeester T [1]
  • Branigan E [1]
  • Gelman L [1]
  • Gill ME [1]
  • Guerillon C [1]
  • Hay RT [1]
  • Ibrahim AFM [1]
  • Julius R [1]
  • Luijsterburg MS [1]
  • Mailand N [1]
  • Marceau AH [1]
  • Peters AHFM [1]
  • Renatus M [1]
  • Rubin SM [1]
  • Van Attikum H [1]

Author by ORCID

  • Bunker RD [16]
  • Matsumoto S [12]
  • Thoma NH [12]
  • Schenk AD [11]
  • Grand RS [10]
  • Rabl J [8]
  • Petzold G [5]
  • Fischer ES [5]
  • Stahlberg H [5]
  • Schubeler D [3]
  • Weiss J [3]
  • Graff-meyer A [3]
  • Kempf G [3]
  • Pathare GR [3]
  • Matsumoto S [3]
  • Isbel L [3]
  • Michael AK [3]
  • Burger L [3]
  • Thoma NH [3]
  • Kozicka Z [3]
  • Cavadini S [3]
  • Gainza P [2]
  • Townson SA [2]
  • Hunkeler M [2]
  • Lumb KJ [2]
  • Quan C [2]
  • Andres-pons A [1]
  • Aguirre JD [1]
  • Peters AHFM [1]
  • Rubin SM [1]
  • Guerillon C [1]
  • Gill ME [1]
  • Gelman L [1]

Journal

  • NATURE [12]
  • SCIENCE [3]
  • NAT COMMUN [2]
  • MOL CELL [1]

Software

  • RELION [9]
  • EMAN2, RELION [4]
  • CRYOSPARC [3]
  • CTFFIND [2]
  • EMAN2, SPARX, RELION [1]

Microscope

  • FEI TITAN KRIOS [15]
  • TFS KRIOS [2]
  • FEI/PHILIPS CM200FEG [1]

Electron Source

  • FIELD EMISSION GUN [18]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [12]
  • GATAN K2 QUANTUM 4K X 4K [3]
  • TFS FALCON 4I 4K X 4K [2]
  • TVIPS TEMCAM-F416 4K X 4K [1]

External links

  • AlphaFold DB [18]
  • PDBe-Kb [18]
  • UniProt [18]
  • Complex Portal [13]
  • Gene Ontology [13]
  • PDB [13]
  • Pfam [13]
  • InterPro [11]
  • ChEBI [5]
  • ChEMBL [5]
  • DrugBank [5]
  • SCOP2 [1]