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RIBOSOMAL

Filter By

Current Database

  • EMDB [2934]
  • EMPIAR [43]

Current status

  • REL [2977]

Sample type

  • Complex [2867]
  • Protein [2051]
  • RNA [1955]
  • Ligand [1572]
  • Sample [222]
  • DNA [84]
  • Cell [48]
  • Cellular component [41]
  • Other [2]
  • Virus [1]

Organism

  • Escherichia coli [736]
  • Homo sapiens [677]
  • Escherichia coli [363]
  • Saccharomyces cerevisiae [269]
  • Oryctolagus cuniculus [193]
  • Saccharomyces cerevisiae [131]
  • Synthetic construct [121]
  • Escherichia coli [66]
  • Bacillus subtilis [54]
  • Bacillus subtilis [46]
  • Mycolicibacterium smegmatis [44]
  • Chaetomium thermophilum [38]
  • Staphylococcus aureus [34]
  • Thermus thermophilus [34]
  • Mycoplasma pneumoniae [29]
  • Staphylococcus aureus [26]
  • Sus scrofa [26]
  • Saccharomyces cerevisiae [23]
  • Severe acute respiratory syndrome coronavirus [22]
  • Mus musculus [21]
  • Acinetobacter baumannii [20]
  • Apis mellifera [20]
  • Enterobacteria phage t4 [19]
  • Pyrococcus furiosus [18]
  • Kluyveromyces lactis [17]
  • Bos taurus [17]
  • Rattus norvegicus [16]
  • Mycolicibacterium smegmatis [15]
  • Kluyveromyces lactis [15]
  • Plasmodium falciparum [15]
  • Canis lupus [15]
  • Chaetomium thermophilum [14]
  • Hepacivirus c [13]
  • Cricket paralysis virus [13]
  • Taura syndrome virus [13]
  • Sulfolobus acidocaldarius [13]
  • Spinacia oleracea [13]
  • Enterococcus faecalis [12]
  • Mycobacterium tuberculosis [12]
  • Pyrococcus abyssi [11]
  • Entamoeba histolytica [11]
  • Tetrahymena thermophila [11]
  • Dictyostelium discoideum [11]
  • Trypanosoma brucei [11]
  • Saccharolobus solfataricus [10]
  • Schizosaccharomyces pombe [10]
  • Triticum aestivum [10]
  • Mycobacterium tuberculosis [10]
  • Escherichia coli [10]
  • Listeria monocytogenes [9]
  • Leishmania major [9]
  • Hepacivirus c [8]
  • Giardia intestinalis [8]
  • Candida albicans [8]
  • Drosophila melanogaster [8]
  • Listeria innocua [7]
  • Methanosarcina acetivorans [7]
  • Pseudomonas aeruginosa [7]
  • Escherichia coli [7]
  • Escherichia coli [7]
  • Saccharomyces cerevisiae [7]
  • Toxoplasma gondii [7]
  • Giardia intestinalis [7]
  • Pseudomonas aeruginosa [6]
  • Israeli acute paralysis virus [6]
  • Hepacivirus hominis [6]
  • Arabidopsis thaliana [6]
  • Bacteriophage sp. [6]
  • Triticum sp. [6]
  • Acinetobacter baumannii [6]
  • Vibrio alginolyticus [6]
  • Gallus gallus [6]
  • Pseudomonas putida [5]
  • Middle east respiratory syndrome-related coronavirus [5]
  • Severe acute respiratory syndrome coronavirus [5]
  • Cutibacterium acnes [5]
  • (no species) [5]
  • Scytonema hofmannii [5]
  • Staphylococcus aureus [5]
  • Acinetobacter baumannii [5]
  • West nile virus [4]
  • Acinetobacter sp. cip 102082 [4]
  • Acinetobacter sp. cip 51.11 [4]
  • Acinetobacter beijerinckii [4]
  • Acinetobacter sp. niph 899 [4]
  • Escherichia coli [4]
  • Acinetobacter sp. 809848 [4]
  • Acinetobacter sp. 263903-1 [4]
  • Acinetobacter sp. anc 5600 [4]
  • Acinetobacter sp. anc 4470 [4]
  • Thermus thermophilus [4]
  • Thermus thermophilus [4]
  • Hepacivirus c [4]
  • Neurospora crassa [4]
  • Escherichia coli [4]
  • Solanum lycopersicum [4]
  • Acinetobacter rudis [4]
  • Oryza sativa [4]
  • Psychrobacter urativorans [4]
  • Enterococcus faecalis [4]

EM Method

  • Single-particle [2879]
  • Subtomogram averaging [52]
  • Tomography [2]
  • Electron Crystallography [1]

Resolution

  • < 2Å [32]
  • ≥ 2Å and < 3Å [908]
  • ≥ 3Å and < 4Å [1145]
  • ≥ 4Å and < 5Å [277]
  • ≥ 5Å and < 6Å [158]
  • ≥ 6Å and < 8Å [155]
  • ≥ 8Å and < 12Å [137]
  • ≥ 12Å and < 16Å [51]
  • ≥ 16Å and < 20Å [22]
  • ≥ 20Å and < 30Å [23]
  • ≥ 30Å [23]

Model molecular weight

  • 50-100 kDa [1]
  • 100-250 kDa [3]
  • 250-500 kDa [7]
  • 500-1000 kDa [5]
  • 1-2 MDa [37]
  • 2-5 MDa [51]
  • 5-10 MDa [1]

Release Date

  • 2026 [92]
  • 2025 [457]
  • 2024 [440]
  • 2023 [493]
  • 2022 [340]
  • 2021 [238]
  • 2020 [304]
  • 2019 [127]
  • 2018 [96]
  • 2017 [86]
  • 2016 [92]
  • 2015 [49]
  • 2014 [57]
  • 2013 [26]
  • 2012 [8]
  • 2011 [16]
  • 2010 [11]
  • 2009 [2]
  • 2008 [6]
  • 2007 [24]
  • 2006 [8]
  • 2005 [2]
  • 2004 [1]
  • 2003 [2]

Author by name

  • Williamson JR [274]
  • Beckmann R [269]
  • Lyumkis D [233]
  • Berninghausen O [200]
  • Sheng K [180]
  • Klinge S [158]
  • Cheng J [157]
  • Dong X [149]
  • Wilson DN [139]
  • Vanden Broeck A [128]
  • Rabuck-gibbons JN [119]
  • Frank J [116]
  • Spahn CMT [105]
  • Ban N [102]
  • Korostelev AA [95]
  • Zhang Y [95]
  • Li N [93]
  • Becker T [86]
  • Mielke T [84]
  • Lee J [83]
  • Wang C [81]
  • Demo G [79]
  • Loveland AB [79]
  • Amunts A [77]
  • Hurt E [77]
  • Gao N [72]
  • Aiyer S [71]
  • Thoms M [71]
  • Pestova TV [70]
  • Rappsilber J [70]
  • Ortega J [68]
  • Ramakrishnan V [67]
  • Buschauer R [63]
  • Lau B [63]
  • Li X [63]
  • Burger J [62]
  • Leibundgut M [62]
  • Brown ZP [60]
  • Lin J [60]
  • Rodnina MV [60]
  • Ameismeier M [59]
  • Boehringer D [59]
  • Hellen CUT [58]
  • Zhang J [58]
  • Aibara S [57]
  • Ebright RH [57]
  • Nikolay R [57]
  • De S [55]
  • Xiong Y [54]
  • Li Y [53]
  • Myasnikov AG [53]
  • Denk T [52]
  • Zheng W [52]
  • Abaeva IS [51]
  • Hashem Y [51]
  • Yusupov M [51]
  • Beckert B [49]
  • Wang S [49]
  • Fucini P [48]
  • Scaiola A [48]
  • Yonath A [48]
  • Connell SR [47]
  • Marquardt S [47]
  • Takacs M [47]
  • Wang J [47]
  • Webster MW [47]
  • Weixlbaumer A [47]
  • Wiliamson JR [47]
  • Bashan A [46]
  • Crowe-mcauliffe C [46]
  • Hillen HS [46]
  • Lauer S [46]
  • Lauer SM [46]
  • Richter-dennerlein R [46]
  • Gil-carton D [45]
  • Wu S [45]
  • Devarkar SC [44]
  • Hou YM [44]
  • Loerke J [44]
  • Lomakin IB [44]
  • Rahil H [44]
  • Blaha G [43]
  • Basu K [42]
  • Carragher B [42]
  • Potter CS [42]
  • Chen Y [41]
  • Kaminishi T [41]
  • Molodtsov V [41]
  • Sprink T [41]
  • Zhang K [41]
  • Charles K [40]
  • Chauvier A [40]
  • Graziadei A [40]
  • Iturrioz I [40]
  • Miropolskaya N [40]
  • Saint-andre C [40]
  • Schedlbauer A [40]
  • Walter NG [40]
  • Zhu C [40]
  • Boshnakovska A [39]

Author by ORCID

  • Ramakrishnan V [6]
  • Wilson DN [6]
  • Beckmann R [5]
  • Blaza JN [4]
  • Frank J [4]
  • Schneider C [4]
  • Zheng W [4]
  • Ekemezie CL [4]
  • Hill CH [4]
  • Zhang K [4]
  • Chai P [4]
  • Brown A [4]
  • Rybak MY [4]
  • Brown CR [4]
  • Sun M [4]
  • Amunts A [4]
  • Melnikov SV [4]
  • Zhu J [4]
  • Csorgo B [4]
  • Gao N [4]
  • Moynihan PJ [4]
  • Gagnon MG [4]
  • Nikolay R [4]
  • Itoh Y [3]
  • Hegde RS [3]
  • Becker T [3]
  • Yokoyama T [3]
  • Spahn CMT [3]
  • Atkinson GC [3]
  • Fraser JS [3]
  • Shirouzu M [3]
  • Hauryliuk V [3]
  • Shao S [3]
  • Lauer SM [3]
  • Fu Z [2]
  • Zuber PK [2]
  • Cruz VE [2]
  • Yusupov M [2]
  • Gu J [2]
  • Kaushal PS [2]
  • Hou YM [2]
  • Ishiguro K [2]
  • Iwasaki S [2]
  • Osterman IA [2]
  • Atanassov I [2]
  • Hirst J [2]
  • Maviza TP [2]
  • Sergiev P [2]
  • Wright JJ [2]
  • Barrientos A [2]
  • Hoffmann R [2]
  • Erzberger JP [2]
  • Muller R [2]
  • Laptev I [2]
  • Liu YX [2]
  • Qin B [2]
  • Rorbach J [2]
  • Yin Z [2]
  • Fujimori DG [2]
  • Miyauchi K [2]
  • Burger J [2]
  • Li Y [2]
  • Liu T [2]
  • Demo G [2]
  • Jomaa A [2]
  • Wieland M [2]
  • Tan M [2]
  • Boehringer D [2]
  • Yang M [2]
  • Morici M [2]
  • Lan P [2]
  • Murray J [2]
  • Yusupova G [2]
  • Khawaja A [2]
  • Suzuki T [2]
  • Brown ZP [2]
  • Rodnina MV [2]
  • Koller TO [2]
  • Fisher W [2]
  • James NR [2]
  • Korostelev AA [2]
  • Takada H [2]
  • Aibara S [2]
  • Vazquez-laslop N [2]
  • Myasnikov AG [2]
  • Blanchard SC [2]
  • Grba DN [2]
  • Jenner L [2]
  • Rundlet EJ [2]
  • Cheng J [2]
  • Young ID [2]
  • Gasse J [2]
  • Reepmeyer M [2]
  • Kopito RR [1]
  • Scheerer P [1]
  • Cowman AF [1]
  • Marschall E [1]
  • Venugopal H [1]
  • Schneider A [1]
  • Vieira-vieira CH [1]

Journal

  • NAT COMMUN [597]
  • SCIENCE [333]
  • NATURE [272]
  • NUCLEIC ACIDS RES [266]
  • TO BE PUBLISHED [241]
  • NAT STRUCT MOL BIOL [144]
  • MOL CELL [117]
  • ELIFE [115]
  • BIORXIV [108]
  • CELL [101]
  • STRUCTURE [94]
  • EMBO J [89]
  • PNAS [89]
  • SCI ADV [58]
  • CELL REP [35]
  • ACTA CRYSTALLOGR D STRUCT BIOL [33]
  • RNA [31]
  • SCI REP [27]
  • PLOS ONE [25]
  • MBIO [22]
  • NAT CHEM BIOL [21]
  • EMBO REP [20]
  • J BIOL CHEM [20]
  • CELL RES [18]
  • PLOS BIOL [18]
  • J MOL BIOL [17]
  • NAT METHODS [16]
  • NAT MICROBIOL [13]
  • PROTEIN CELL [12]
  • INT J MOL SCI [10]
  • PROTEIN SCI [9]
  • BIOMOLECULES [8]
  • LIFE SCI ALLIANCE [8]
  • ACS CHEM BIOL [6]
  • BIOCHEMISTRY [6]
  • COMMUN BIOL [6]
  • FEBS LETT [6]
  • MOLECULES [6]
  • FRONT MOL BIOSCI [5]
  • J AM CHEM SOC [5]
  • MSPHERE [5]
  • NAT PLANTS [5]
  • ACS PHARMACOL TRANSL SCI [4]
  • CELL DISCOV [4]
  • J.BIOCHEM. [4]
  • PLANT COMMUN. [4]
  • ACS CENT SCI [3]
  • BIOCHEM J [3]
  • ISCIENCE [3]
  • PNAS NEXUS [3]
  • PROTEINS [3]
  • RES SQ [3]
  • CANCER DISCOV [2]
  • CHEM MED CHEM [2]
  • FEBS J [2]
  • FRONT MICROBIOL [2]
  • INT J BIOL MACROMOL [2]
  • JOURNAL OF THE AMERICAN CHEMICAL SOCIETY [2]
  • MICROBIOL SPECTR [2]
  • NAT BIOTECHNOL [2]
  • PHILOS.TRANS.R.SOC.LOND.B BIOL.SCI. [2]
  • PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES (PNAS) [2]
  • EMERG MICROBES INFECT [1]
  • FEBS OPEN BIO [1]
  • IUCRJ [1]
  • J INVEST DERMATOL. [1]
  • J MED CHEM [1]
  • J STRUCT BIOL [1]
  • METHODS [1]
  • NAT CELL BIOL [1]
  • NAT CHEM [1]

Software

  • RELION [1078]
  • CRYOSPARC [699]
  • FREALIGN [147]
  • CTFFIND [143]
  • GCTF [90]
  • SPIDER [81]
  • WARP [47]
  • CISTEM [36]
  • COOT [28]
  • XMIPP [27]
  • CHIMERA [20]
  • UCSF CHIMERA [19]
  • APPION [18]
  • CTFTILT [18]
  • SPIDER, APPION [17]
  • EMAN [16]
  • M [15]
  • PHENIX [12]
  • RELION, CTFFIND3 [11]
  • SIGNATURE, CTFFIND3, SPIDER, SPARX [11]
  • MDFF [10]
  • PYTOM [10]
  • SPIDER, RELION [10]
  • CTFFIND3, RELION [8]
  • O [8]
  • SITUS [7]
  • GAP [6]
  • SPIDER, SPARX [6]
  • IMAGIC [5]
  • IMAGIC, EMAN, FREALIGN, SPIDER, GAP [5]
  • SPIDER, PACKAGE [5]
  • CHIMERA, COOT [4]
  • CHIMERA, EMFIT, COOT [4]
  • NAMD [4]
  • XMIPP, FREALIGN [4]
  • CTFFIND3 [3]
  • CTFFIND3, RELION1.3 [3]
  • IMAGIC-5, SPIDER [3]
  • SPIDER AND GAP [3]
  • SPIDER PACKAGE [3]
  • URO [3]
  • CHIMERA, O, COOT [2]
  • CTFFIND3, EMAN2.1, RELION1.3 [2]
  • CTFFIND3, RELION, 1.2, 1.3 [2]
  • CTFFIND4 [2]
  • EMAN2, IMAGIC, FREALIGN, RSAMPLE, CTFFIND3 [2]
  • GROMACS [2]
  • IMOD [2]
  • PROGRAM O [2]
  • S2S, MODERNA, MODELLER, MDFF [2]
  • SITUS, LOCALFIT [2]
  • AMIRA 3.1, TGS SOFTWARE [1]
  • AV3 [1]
  • BKPR [1]
  • CCP4 PACKAGE [1]
  • CHIMERA, CNS [1]
  • CHIMERA, MDFF [1]
  • CHIMERA, ROSETTA [1]
  • CRYODRGN [1]
  • CRYOLO [1]
  • CTFFIND3, RELION, 1.2 [1]
  • DIREX [1]
  • EM [1]
  • EMAN2 [1]
  • EMAN2, IMAGIC [1]
  • ESSENS [1]
  • EYE [1]
  • FLEX-EM [1]
  • FREALIGNX [1]
  • IMAGIC, FREALIGN, SPIDER, GAP [1]
  • IMAGIC-5 [1]
  • IMAGIC-5,SPIDER [1]
  • ISOLDE [1]
  • RELION1.3 [1]
  • RSREF, TNT [1]
  • SCIPION [1]
  • SIGNATURE, SPIDER, CHIMERA [1]
  • SPARX [1]
  • SPDER [1]
  • SPHIRE [1]
  • SPIDER, IMAGIC [1]
  • SPIDER, IMAGIC-5, CTFFIND3, RELION [1]
  • TOM TOOLBOX [1]

Microscope

  • FEI TITAN KRIOS [1890]
  • TFS KRIOS [454]
  • FEI TALOS ARCTICA [166]
  • FEI POLARA 300 [113]
  • FEI TECNAI F30 [103]
  • FEI TECNAI F20 [62]
  • TFS GLACIOS [28]
  • JEOL CRYO ARM 300 [26]
  • FEI TECNAI SPIRIT [17]
  • JEOL CRYO ARM 200 [14]
  • FEI TECNAI 20 [13]
  • FEI TECNAI ARCTICA [12]
  • FEI/PHILIPS CM200FEG [11]
  • JEOL 2010F [9]
  • JEOL 3200FSC [6]
  • FEI TECNAI 12 [5]
  • FEI TITAN [5]
  • TFS TALOS [5]
  • JEOL 2200FSC [2]
  • JEOL 3200FS [2]
  • JEOL KYOTO-3000SFF [2]
  • FEI/PHILIPS CM200FEG/ST [1]
  • FEI/PHILIPS CM200FEG/UT [1]
  • FEI/PHILIPS CM300FEG/T [1]
  • JEOL 1400/HR YPS FEG [1]

Electron Source

  • FIELD EMISSION GUN [2903]
  • LAB6 [23]
  • OTHER [6]
  • TUNGSTEN HAIRPIN [2]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [887]
  • GATAN K3 6K X 4K [629]
  • GATAN K3 BIOQUANTUM 6K X 4K [405]
  • FEI FALCON III 4K X 4K [284]
  • FEI FALCON II 4K X 4K [263]
  • FEI FALCON IV 4K X 4K [113]
  • GATAN K2 QUANTUM 4K X 4K [92]
  • KODAK SO-163 FILM [64]
  • TVIPS TEMCAM-F416 4K X 4K [33]
  • FEI EAGLE 4K X 4K [29]
  • GATAN ULTRASCAN 4000 4K X 4K [27]
  • GATAN K2 4K X 4K [22]
  • GATAN K2 BASE 4K X 4K [17]
  • TFS FALCON 4I 4K X 4K [16]
  • OTHER [13]
  • GATAN K3 BIOCONTINUUM 6K X 4K [12]
  • DIRECT ELECTRON DE-20 5K X 3K [10]
  • DIRECT ELECTRON DE-64 8K X 8K [5]
  • FEI FALCON I 4K X 4K [4]
  • GENERIC GATAN 4K X 4K [4]
  • FEI EAGLE 2K X 2K [2]
  • GENERIC CCD [2]
  • GENERIC TVIPS 4K X 4K [2]
  • TVIPS TEMCAM-F415 4K X 4K [2]
  • DECTRIS SINGLA 1K X 1K [1]
  • DIRECT ELECTRON DE-16 4K X 4K [1]
  • GATAN K2 IS 4K X 4K [1]
  • GATAN MULTISCAN [1]

EMPIAR Experiment type

  • EMDB [40]
  • EXCEPTION [1]
  • FIB-SEM [1]
  • SBF-SEM [1]

EMPIAR Image category

  • MICROGRAPHS - MULTIFRAME [34]
  • MICROGRAPHS - SINGLE FRAME [7]
  • PICKED PARTICLES - MULTIFRAME - PROCESSED [5]
  • RECONSTRUCTED VOLUMES [3]
  • PICKED PARTICLES - SINGLE FRAME - PROCESSED [2]
  • PICKED PARTICLES - MULTIFRAME - UNPROCESSED [1]
  • PICKED PARTICLES - SINGLE FRAME - UNPROCESSED [1]
  • TILT SERIES [1]

External links

  • PDB [105]
  • UniProt [104]
  • AlphaFold DB [102]
  • PDBe-Kb [102]
  • Gene Ontology [97]
  • InterPro [97]
  • Pfam [94]
  • ChEBI [83]
  • DrugBank [83]
  • ChEMBL [78]
  • EMDB [40]
  • Complex Portal [37]
  • SCOP2 [11]
  • EMPIAR [10]
  • CATH [2]
Sort by: Download
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EMD-70083
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3D View
Human 80S ribosome stalled on MYC nascent chain
Release date: March 4, 2026
Resolution: 2.2 Å
EM Method: Single-particle
Fitted PDBs: 9o3v

Sauer PV, Diamond PD, Holm M, Swanson-Swett CJ, Ferguson L, Bratset NM, Wienker GW, Sim JS, Adams HK, Kenner L, Meyers M, Gygi D, Konst ZA, Bahmanyar SS, Hamann LG, Schuller AP

Nat Commun (2026) [ DOI: doi:10.1038/s41467-026-69891-2 ]

EMD-70084
Download Map
3D View
Human 80S ribosome bound to IDB-001 stalled on MYC nascent chain
Release date: March 4, 2026
Resolution: 1.9 Å
EM Method: Single-particle
Fitted PDBs: 9o3w
Q-score: 0.678

Sauer PV, Diamond PD, Holm M, Swanson-Swett CJ, Ferguson L, Bratset NM, Wienker GW, Sim JS, Adams HK, Kenner L, Meyers M, Gygi D, Konst ZA, Bahmanyar SS, Hamann LG, Schuller AP

Nat Commun (2026) [ DOI: doi:10.1038/s41467-026-69891-2 ]

EMD-70086
Download Map
3D View
Human 80S ribosome bound to IDB-002 stalled on FPAK-containing nascent chain
Release date: March 4, 2026
Resolution: 2.2 Å
EM Method: Single-particle
Fitted PDBs: 9o3y

Sauer PV, Diamond PD, Holm M, Swanson-Swett CJ, Ferguson L, Bratset NM, Wienker GW, Sim JS, Adams HK, Kenner L, Meyers M, Gygi D, Konst ZA, Bahmanyar SS, Hamann LG, Schuller AP

Nat Commun (2026) [ DOI: doi:10.1038/s41467-026-69891-2 ]

EMD-72314
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3D View
ABCE1-eRF1-RNC-AMD1C
Release date: March 4, 2026
Resolution: 2.86 Å
EM Method: Single-particle
Fitted PDBs: 9q7q

Maldosevic E, Boiocchi FS, Swirski MI, Meiklejohn KA, Yordanova MM, Baranov PV, Jomaa A

To Be Published

EMD-55369
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Control media rat neuronal 80S ribosome - consensus
Release date: Feb. 25, 2026
Resolution: 6.3 Å
EM Method: Subtomogram averaging

Schwarz A, Mueller M, Will H, Dietrich L, Giandomenico SL, Tushev G, Bartnik I, Khusainov I, Fusco CM, Schuman EM

Science (2026) 391 pp. eadr4287-eadr4287 [ Pubmed: 41712727 DOI: doi:10.1126/science.adr4287 ]

EMD-55370
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Control media rat neuronal 80S ribosome state - decoding
Release date: Feb. 25, 2026
Resolution: 5.4 Å
EM Method: Subtomogram averaging

Schwarz A, Mueller M, Will H, Dietrich L, Giandomenico SL, Tushev G, Bartnik I, Khusainov I, Fusco CM, Schuman EM

Science (2026) 391 pp. eadr4287-eadr4287 [ Pubmed: 41712727 DOI: doi:10.1126/science.adr4287 ]

EMD-55371
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Control media rat neuronal 80S ribosome state - peptide bond formation
Release date: Feb. 25, 2026
Resolution: 5.4 Å
EM Method: Subtomogram averaging

Schwarz A, Mueller M, Will H, Dietrich L, Giandomenico SL, Tushev G, Bartnik I, Khusainov I, Fusco CM, Schuman EM

Science (2026) 391 pp. eadr4287-eadr4287 [ Pubmed: 41712727 DOI: doi:10.1126/science.adr4287 ]

EMD-55372
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Control media rat neuronal 80S ribosome state - pre-translocating
Release date: Feb. 25, 2026
Resolution: 5.4 Å
EM Method: Subtomogram averaging

Schwarz A, Mueller M, Will H, Dietrich L, Giandomenico SL, Tushev G, Bartnik I, Khusainov I, Fusco CM, Schuman EM

Science (2026) 391 pp. eadr4287-eadr4287 [ Pubmed: 41712727 DOI: doi:10.1126/science.adr4287 ]

EMD-55373
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Control media rat neuronal 80S ribosome state - hibernating I
Release date: Feb. 25, 2026
Resolution: 6.3 Å
EM Method: Subtomogram averaging

Schwarz A, Mueller M, Will H, Dietrich L, Giandomenico SL, Tushev G, Bartnik I, Khusainov I, Fusco CM, Schuman EM

Science (2026) 391 pp. eadr4287-eadr4287 [ Pubmed: 41712727 DOI: doi:10.1126/science.adr4287 ]

EMD-55374
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3D View
Nutrient deprived rat neuronal 80S ribosome - consensus
Release date: Feb. 25, 2026
Resolution: 5.4 Å
EM Method: Subtomogram averaging

Schwarz A, Mueller M, Will H, Dietrich L, Giandomenico SL, Tushev G, Bartnik I, Khusainov I, Fusco CM, Schuman EM

Science (2026) 391 pp. eadr4287-eadr4287 [ Pubmed: 41712727 DOI: doi:10.1126/science.adr4287 ]

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Current Database

  • EMDB [2934]
  • EMPIAR [43]

Current status

  • REL [2977]

Sample type

  • Complex [2867]
  • Protein [2051]
  • RNA [1955]
  • Ligand [1572]
  • Sample [222]
  • DNA [84]
  • Cell [48]
  • Cellular component [41]
  • Other [2]
  • Virus [1]

Organism

  • Escherichia coli [736]
  • Homo sapiens [677]
  • Escherichia coli [363]
  • Saccharomyces cerevisiae [269]
  • Oryctolagus cuniculus [193]
  • Saccharomyces cerevisiae [131]
  • Synthetic construct [121]
  • Escherichia coli [66]
  • Bacillus subtilis [54]
  • Bacillus subtilis [46]
  • Mycolicibacterium smegmatis [44]
  • Chaetomium thermophilum [38]
  • Staphylococcus aureus [34]
  • Thermus thermophilus [34]
  • Mycoplasma pneumoniae [29]
  • Staphylococcus aureus [26]
  • Sus scrofa [26]
  • Saccharomyces cerevisiae [23]
  • Severe acute respiratory syndrome coronavirus [22]
  • Mus musculus [21]
  • Acinetobacter baumannii [20]
  • Apis mellifera [20]
  • Enterobacteria phage t4 [19]
  • Pyrococcus furiosus [18]
  • Kluyveromyces lactis [17]
  • Bos taurus [17]
  • Rattus norvegicus [16]
  • Mycolicibacterium smegmatis [15]
  • Kluyveromyces lactis [15]
  • Plasmodium falciparum [15]
  • Canis lupus [15]
  • Chaetomium thermophilum [14]
  • Hepacivirus c [13]
  • Cricket paralysis virus [13]
  • Taura syndrome virus [13]
  • Sulfolobus acidocaldarius [13]
  • Spinacia oleracea [13]
  • Enterococcus faecalis [12]
  • Mycobacterium tuberculosis [12]
  • Pyrococcus abyssi [11]
  • Entamoeba histolytica [11]
  • Tetrahymena thermophila [11]
  • Dictyostelium discoideum [11]
  • Trypanosoma brucei [11]
  • Saccharolobus solfataricus [10]
  • Schizosaccharomyces pombe [10]
  • Triticum aestivum [10]
  • Mycobacterium tuberculosis [10]
  • Escherichia coli [10]
  • Listeria monocytogenes [9]
  • Leishmania major [9]
  • Hepacivirus c [8]
  • Giardia intestinalis [8]
  • Candida albicans [8]
  • Drosophila melanogaster [8]
  • Listeria innocua [7]
  • Methanosarcina acetivorans [7]
  • Pseudomonas aeruginosa [7]
  • Escherichia coli [7]
  • Escherichia coli [7]
  • Saccharomyces cerevisiae [7]
  • Toxoplasma gondii [7]
  • Giardia intestinalis [7]
  • Pseudomonas aeruginosa [6]
  • Israeli acute paralysis virus [6]
  • Hepacivirus hominis [6]
  • Arabidopsis thaliana [6]
  • Bacteriophage sp. [6]
  • Triticum sp. [6]
  • Acinetobacter baumannii [6]
  • Vibrio alginolyticus [6]
  • Gallus gallus [6]
  • Pseudomonas putida [5]
  • Middle east respiratory syndrome-related coronavirus [5]
  • Severe acute respiratory syndrome coronavirus [5]
  • Cutibacterium acnes [5]
  • (no species) [5]
  • Scytonema hofmannii [5]
  • Staphylococcus aureus [5]
  • Acinetobacter baumannii [5]
  • West nile virus [4]
  • Acinetobacter sp. cip 102082 [4]
  • Acinetobacter sp. cip 51.11 [4]
  • Acinetobacter beijerinckii [4]
  • Acinetobacter sp. niph 899 [4]
  • Escherichia coli [4]
  • Acinetobacter sp. 809848 [4]
  • Acinetobacter sp. 263903-1 [4]
  • Acinetobacter sp. anc 5600 [4]
  • Acinetobacter sp. anc 4470 [4]
  • Thermus thermophilus [4]
  • Thermus thermophilus [4]
  • Hepacivirus c [4]
  • Neurospora crassa [4]
  • Escherichia coli [4]
  • Solanum lycopersicum [4]
  • Acinetobacter rudis [4]
  • Oryza sativa [4]
  • Psychrobacter urativorans [4]
  • Enterococcus faecalis [4]

EM Method

  • Single-particle [2879]
  • Subtomogram averaging [52]
  • Tomography [2]
  • Electron Crystallography [1]

Resolution

  • < 2Å [32]
  • ≥ 2Å and < 3Å [908]
  • ≥ 3Å and < 4Å [1145]
  • ≥ 4Å and < 5Å [277]
  • ≥ 5Å and < 6Å [158]
  • ≥ 6Å and < 8Å [155]
  • ≥ 8Å and < 12Å [137]
  • ≥ 12Å and < 16Å [51]
  • ≥ 16Å and < 20Å [22]
  • ≥ 20Å and < 30Å [23]
  • ≥ 30Å [23]

Model molecular weight

  • 50-100 kDa [1]
  • 100-250 kDa [3]
  • 250-500 kDa [7]
  • 500-1000 kDa [5]
  • 1-2 MDa [37]
  • 2-5 MDa [51]
  • 5-10 MDa [1]

Release Date

  • 2026 [92]
  • 2025 [457]
  • 2024 [440]
  • 2023 [493]
  • 2022 [340]
  • 2021 [238]
  • 2020 [304]
  • 2019 [127]
  • 2018 [96]
  • 2017 [86]
  • 2016 [92]
  • 2015 [49]
  • 2014 [57]
  • 2013 [26]
  • 2012 [8]
  • 2011 [16]
  • 2010 [11]
  • 2009 [2]
  • 2008 [6]
  • 2007 [24]
  • 2006 [8]
  • 2005 [2]
  • 2004 [1]
  • 2003 [2]

Author by name

  • Williamson JR [274]
  • Beckmann R [269]
  • Lyumkis D [233]
  • Berninghausen O [200]
  • Sheng K [180]
  • Klinge S [158]
  • Cheng J [157]
  • Dong X [149]
  • Wilson DN [139]
  • Vanden Broeck A [128]
  • Rabuck-gibbons JN [119]
  • Frank J [116]
  • Spahn CMT [105]
  • Ban N [102]
  • Korostelev AA [95]
  • Zhang Y [95]
  • Li N [93]
  • Becker T [86]
  • Mielke T [84]
  • Lee J [83]
  • Wang C [81]
  • Demo G [79]
  • Loveland AB [79]
  • Amunts A [77]
  • Hurt E [77]
  • Gao N [72]
  • Aiyer S [71]
  • Thoms M [71]
  • Pestova TV [70]
  • Rappsilber J [70]
  • Ortega J [68]
  • Ramakrishnan V [67]
  • Buschauer R [63]
  • Lau B [63]
  • Li X [63]
  • Burger J [62]
  • Leibundgut M [62]
  • Brown ZP [60]
  • Lin J [60]
  • Rodnina MV [60]
  • Ameismeier M [59]
  • Boehringer D [59]
  • Hellen CUT [58]
  • Zhang J [58]
  • Aibara S [57]
  • Ebright RH [57]
  • Nikolay R [57]
  • De S [55]
  • Xiong Y [54]
  • Li Y [53]
  • Myasnikov AG [53]
  • Denk T [52]
  • Zheng W [52]
  • Abaeva IS [51]
  • Hashem Y [51]
  • Yusupov M [51]
  • Beckert B [49]
  • Wang S [49]
  • Fucini P [48]
  • Scaiola A [48]
  • Yonath A [48]
  • Connell SR [47]
  • Marquardt S [47]
  • Takacs M [47]
  • Wang J [47]
  • Webster MW [47]
  • Weixlbaumer A [47]
  • Wiliamson JR [47]
  • Bashan A [46]
  • Crowe-mcauliffe C [46]
  • Hillen HS [46]
  • Lauer S [46]
  • Lauer SM [46]
  • Richter-dennerlein R [46]
  • Gil-carton D [45]
  • Wu S [45]
  • Devarkar SC [44]
  • Hou YM [44]
  • Loerke J [44]
  • Lomakin IB [44]
  • Rahil H [44]
  • Blaha G [43]
  • Basu K [42]
  • Carragher B [42]
  • Potter CS [42]
  • Chen Y [41]
  • Kaminishi T [41]
  • Molodtsov V [41]
  • Sprink T [41]
  • Zhang K [41]
  • Charles K [40]
  • Chauvier A [40]
  • Graziadei A [40]
  • Iturrioz I [40]
  • Miropolskaya N [40]
  • Saint-andre C [40]
  • Schedlbauer A [40]
  • Walter NG [40]
  • Zhu C [40]
  • Boshnakovska A [39]

Author by ORCID

  • Ramakrishnan V [6]
  • Wilson DN [6]
  • Beckmann R [5]
  • Blaza JN [4]
  • Frank J [4]
  • Schneider C [4]
  • Zheng W [4]
  • Ekemezie CL [4]
  • Hill CH [4]
  • Zhang K [4]
  • Chai P [4]
  • Brown A [4]
  • Rybak MY [4]
  • Brown CR [4]
  • Sun M [4]
  • Amunts A [4]
  • Melnikov SV [4]
  • Zhu J [4]
  • Csorgo B [4]
  • Gao N [4]
  • Moynihan PJ [4]
  • Gagnon MG [4]
  • Nikolay R [4]
  • Itoh Y [3]
  • Hegde RS [3]
  • Becker T [3]
  • Yokoyama T [3]
  • Spahn CMT [3]
  • Atkinson GC [3]
  • Fraser JS [3]
  • Shirouzu M [3]
  • Hauryliuk V [3]
  • Shao S [3]
  • Lauer SM [3]
  • Fu Z [2]
  • Zuber PK [2]
  • Cruz VE [2]
  • Yusupov M [2]
  • Gu J [2]
  • Kaushal PS [2]
  • Hou YM [2]
  • Ishiguro K [2]
  • Iwasaki S [2]
  • Osterman IA [2]
  • Atanassov I [2]
  • Hirst J [2]
  • Maviza TP [2]
  • Sergiev P [2]
  • Wright JJ [2]
  • Barrientos A [2]
  • Hoffmann R [2]
  • Erzberger JP [2]
  • Muller R [2]
  • Laptev I [2]
  • Liu YX [2]
  • Qin B [2]
  • Rorbach J [2]
  • Yin Z [2]
  • Fujimori DG [2]
  • Miyauchi K [2]
  • Burger J [2]
  • Li Y [2]
  • Liu T [2]
  • Demo G [2]
  • Jomaa A [2]
  • Wieland M [2]
  • Tan M [2]
  • Boehringer D [2]
  • Yang M [2]
  • Morici M [2]
  • Lan P [2]
  • Murray J [2]
  • Yusupova G [2]
  • Khawaja A [2]
  • Suzuki T [2]
  • Brown ZP [2]
  • Rodnina MV [2]
  • Koller TO [2]
  • Fisher W [2]
  • James NR [2]
  • Korostelev AA [2]
  • Takada H [2]
  • Aibara S [2]
  • Vazquez-laslop N [2]
  • Myasnikov AG [2]
  • Blanchard SC [2]
  • Grba DN [2]
  • Jenner L [2]
  • Rundlet EJ [2]
  • Cheng J [2]
  • Young ID [2]
  • Gasse J [2]
  • Reepmeyer M [2]
  • Kopito RR [1]
  • Scheerer P [1]
  • Cowman AF [1]
  • Marschall E [1]
  • Venugopal H [1]
  • Schneider A [1]
  • Vieira-vieira CH [1]

Journal

  • NAT COMMUN [597]
  • SCIENCE [333]
  • NATURE [272]
  • NUCLEIC ACIDS RES [266]
  • TO BE PUBLISHED [241]
  • NAT STRUCT MOL BIOL [144]
  • MOL CELL [117]
  • ELIFE [115]
  • BIORXIV [108]
  • CELL [101]
  • STRUCTURE [94]
  • EMBO J [89]
  • PNAS [89]
  • SCI ADV [58]
  • CELL REP [35]
  • ACTA CRYSTALLOGR D STRUCT BIOL [33]
  • RNA [31]
  • SCI REP [27]
  • PLOS ONE [25]
  • MBIO [22]
  • NAT CHEM BIOL [21]
  • EMBO REP [20]
  • J BIOL CHEM [20]
  • CELL RES [18]
  • PLOS BIOL [18]
  • J MOL BIOL [17]
  • NAT METHODS [16]
  • NAT MICROBIOL [13]
  • PROTEIN CELL [12]
  • INT J MOL SCI [10]
  • PROTEIN SCI [9]
  • BIOMOLECULES [8]
  • LIFE SCI ALLIANCE [8]
  • ACS CHEM BIOL [6]
  • BIOCHEMISTRY [6]
  • COMMUN BIOL [6]
  • FEBS LETT [6]
  • MOLECULES [6]
  • FRONT MOL BIOSCI [5]
  • J AM CHEM SOC [5]
  • MSPHERE [5]
  • NAT PLANTS [5]
  • ACS PHARMACOL TRANSL SCI [4]
  • CELL DISCOV [4]
  • J.BIOCHEM. [4]
  • PLANT COMMUN. [4]
  • ACS CENT SCI [3]
  • BIOCHEM J [3]
  • ISCIENCE [3]
  • PNAS NEXUS [3]
  • PROTEINS [3]
  • RES SQ [3]
  • CANCER DISCOV [2]
  • CHEM MED CHEM [2]
  • FEBS J [2]
  • FRONT MICROBIOL [2]
  • INT J BIOL MACROMOL [2]
  • JOURNAL OF THE AMERICAN CHEMICAL SOCIETY [2]
  • MICROBIOL SPECTR [2]
  • NAT BIOTECHNOL [2]
  • PHILOS.TRANS.R.SOC.LOND.B BIOL.SCI. [2]
  • PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES (PNAS) [2]
  • EMERG MICROBES INFECT [1]
  • FEBS OPEN BIO [1]
  • IUCRJ [1]
  • J INVEST DERMATOL. [1]
  • J MED CHEM [1]
  • J STRUCT BIOL [1]
  • METHODS [1]
  • NAT CELL BIOL [1]
  • NAT CHEM [1]

Software

  • RELION [1078]
  • CRYOSPARC [699]
  • FREALIGN [147]
  • CTFFIND [143]
  • GCTF [90]
  • SPIDER [81]
  • WARP [47]
  • CISTEM [36]
  • COOT [28]
  • XMIPP [27]
  • CHIMERA [20]
  • UCSF CHIMERA [19]
  • APPION [18]
  • CTFTILT [18]
  • SPIDER, APPION [17]
  • EMAN [16]
  • M [15]
  • PHENIX [12]
  • RELION, CTFFIND3 [11]
  • SIGNATURE, CTFFIND3, SPIDER, SPARX [11]
  • MDFF [10]
  • PYTOM [10]
  • SPIDER, RELION [10]
  • CTFFIND3, RELION [8]
  • O [8]
  • SITUS [7]
  • GAP [6]
  • SPIDER, SPARX [6]
  • IMAGIC [5]
  • IMAGIC, EMAN, FREALIGN, SPIDER, GAP [5]
  • SPIDER, PACKAGE [5]
  • CHIMERA, COOT [4]
  • CHIMERA, EMFIT, COOT [4]
  • NAMD [4]
  • XMIPP, FREALIGN [4]
  • CTFFIND3 [3]
  • CTFFIND3, RELION1.3 [3]
  • IMAGIC-5, SPIDER [3]
  • SPIDER AND GAP [3]
  • SPIDER PACKAGE [3]
  • URO [3]
  • CHIMERA, O, COOT [2]
  • CTFFIND3, EMAN2.1, RELION1.3 [2]
  • CTFFIND3, RELION, 1.2, 1.3 [2]
  • CTFFIND4 [2]
  • EMAN2, IMAGIC, FREALIGN, RSAMPLE, CTFFIND3 [2]
  • GROMACS [2]
  • IMOD [2]
  • PROGRAM O [2]
  • S2S, MODERNA, MODELLER, MDFF [2]
  • SITUS, LOCALFIT [2]
  • AMIRA 3.1, TGS SOFTWARE [1]
  • AV3 [1]
  • BKPR [1]
  • CCP4 PACKAGE [1]
  • CHIMERA, CNS [1]
  • CHIMERA, MDFF [1]
  • CHIMERA, ROSETTA [1]
  • CRYODRGN [1]
  • CRYOLO [1]
  • CTFFIND3, RELION, 1.2 [1]
  • DIREX [1]
  • EM [1]
  • EMAN2 [1]
  • EMAN2, IMAGIC [1]
  • ESSENS [1]
  • EYE [1]
  • FLEX-EM [1]
  • FREALIGNX [1]
  • IMAGIC, FREALIGN, SPIDER, GAP [1]
  • IMAGIC-5 [1]
  • IMAGIC-5,SPIDER [1]
  • ISOLDE [1]
  • RELION1.3 [1]
  • RSREF, TNT [1]
  • SCIPION [1]
  • SIGNATURE, SPIDER, CHIMERA [1]
  • SPARX [1]
  • SPDER [1]
  • SPHIRE [1]
  • SPIDER, IMAGIC [1]
  • SPIDER, IMAGIC-5, CTFFIND3, RELION [1]
  • TOM TOOLBOX [1]

Microscope

  • FEI TITAN KRIOS [1890]
  • TFS KRIOS [454]
  • FEI TALOS ARCTICA [166]
  • FEI POLARA 300 [113]
  • FEI TECNAI F30 [103]
  • FEI TECNAI F20 [62]
  • TFS GLACIOS [28]
  • JEOL CRYO ARM 300 [26]
  • FEI TECNAI SPIRIT [17]
  • JEOL CRYO ARM 200 [14]
  • FEI TECNAI 20 [13]
  • FEI TECNAI ARCTICA [12]
  • FEI/PHILIPS CM200FEG [11]
  • JEOL 2010F [9]
  • JEOL 3200FSC [6]
  • FEI TECNAI 12 [5]
  • FEI TITAN [5]
  • TFS TALOS [5]
  • JEOL 2200FSC [2]
  • JEOL 3200FS [2]
  • JEOL KYOTO-3000SFF [2]
  • FEI/PHILIPS CM200FEG/ST [1]
  • FEI/PHILIPS CM200FEG/UT [1]
  • FEI/PHILIPS CM300FEG/T [1]
  • JEOL 1400/HR YPS FEG [1]

Electron Source

  • FIELD EMISSION GUN [2903]
  • LAB6 [23]
  • OTHER [6]
  • TUNGSTEN HAIRPIN [2]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [887]
  • GATAN K3 6K X 4K [629]
  • GATAN K3 BIOQUANTUM 6K X 4K [405]
  • FEI FALCON III 4K X 4K [284]
  • FEI FALCON II 4K X 4K [263]
  • FEI FALCON IV 4K X 4K [113]
  • GATAN K2 QUANTUM 4K X 4K [92]
  • KODAK SO-163 FILM [64]
  • TVIPS TEMCAM-F416 4K X 4K [33]
  • FEI EAGLE 4K X 4K [29]
  • GATAN ULTRASCAN 4000 4K X 4K [27]
  • GATAN K2 4K X 4K [22]
  • GATAN K2 BASE 4K X 4K [17]
  • TFS FALCON 4I 4K X 4K [16]
  • OTHER [13]
  • GATAN K3 BIOCONTINUUM 6K X 4K [12]
  • DIRECT ELECTRON DE-20 5K X 3K [10]
  • DIRECT ELECTRON DE-64 8K X 8K [5]
  • FEI FALCON I 4K X 4K [4]
  • GENERIC GATAN 4K X 4K [4]
  • FEI EAGLE 2K X 2K [2]
  • GENERIC CCD [2]
  • GENERIC TVIPS 4K X 4K [2]
  • TVIPS TEMCAM-F415 4K X 4K [2]
  • DECTRIS SINGLA 1K X 1K [1]
  • DIRECT ELECTRON DE-16 4K X 4K [1]
  • GATAN K2 IS 4K X 4K [1]
  • GATAN MULTISCAN [1]

EMPIAR Experiment type

  • EMDB [40]
  • EXCEPTION [1]
  • FIB-SEM [1]
  • SBF-SEM [1]

EMPIAR Image category

  • MICROGRAPHS - MULTIFRAME [34]
  • MICROGRAPHS - SINGLE FRAME [7]
  • PICKED PARTICLES - MULTIFRAME - PROCESSED [5]
  • RECONSTRUCTED VOLUMES [3]
  • PICKED PARTICLES - SINGLE FRAME - PROCESSED [2]
  • PICKED PARTICLES - MULTIFRAME - UNPROCESSED [1]
  • PICKED PARTICLES - SINGLE FRAME - UNPROCESSED [1]
  • TILT SERIES [1]

External links

  • PDB [105]
  • UniProt [104]
  • AlphaFold DB [102]
  • PDBe-Kb [102]
  • Gene Ontology [97]
  • InterPro [97]
  • Pfam [94]
  • ChEBI [83]
  • DrugBank [83]
  • ChEMBL [78]
  • EMDB [40]
  • Complex Portal [37]
  • SCOP2 [11]
  • EMPIAR [10]
  • CATH [2]