Filter By
Current Database
- EMDB [10597]
- EMPIAR [580]
Current status
- REL [11177]
Sample type
- Protein [9932]
- Complex [9609]
- Ligand [7077]
- RNA [1764]
- DNA [891]
- Cellular component [475]
- Virus [296]
- Sample [257]
- Cell [137]
- Tissue [29]
- Other [11]
Organism
- Homo sapiens [6198]
- Mus musculus [882]
- Synthetic construct [838]
- Saccharomyces cerevisiae [655]
- Rattus norvegicus [411]
- Bos taurus [392]
- Saccharomyces cerevisiae [337]
- Escherichia coli [319]
- Sus scrofa [288]
- Oryctolagus cuniculus [224]
- Escherichia coli [195]
- Severe acute respiratory syndrome coronavirus [157]
- Lama glama [147]
- Arabidopsis thaliana [132]
- Saccharomyces cerevisiae [113]
- Drosophila melanogaster [98]
- Xenopus laevis [95]
- Chaetomium thermophilum [81]
- Bacillus subtilis [61]
- Chlamydomonas reinhardtii [49]
- Gallus gallus [40]
- Schizosaccharomyces pombe [37]
- Cricetulus griseus [35]
- (no species) [35]
- Human immunodeficiency virus 1 [35]
- Mycolicibacterium smegmatis [34]
- Escherichia coli [33]
- Caenorhabditis elegans [33]
- Bacillus subtilis [32]
- Vicugna pacos [32]
- Chaetomium thermophilum [30]
- Influenza a virus [29]
- Thermococcus profundus [29]
- Aquifex aeolicus [28]
- Geobacillus stearothermophilus [26]
- Mycobacterium tuberculosis [26]
- Komagataella phaffii [26]
- Mycobacterium tuberculosis [26]
- Monkeypox virus [25]
- Plasmodium falciparum [24]
- Schizosaccharomyces pombe [22]
- Trypanosoma brucei [22]
- Trichoplusia ni [22]
- Unidentified adenovirus [21]
- Canis lupus [21]
- Escherichia virus t7 [20]
- Komagataella phaffii [20]
- Yarrowia lipolytica [20]
- Pseudomonas aeruginosa [19]
- Kluyveromyces lactis [18]
- Legionella pneumophila [18]
- Sus scrofa [18]
- Mesocricetus auratus [16]
- Human herpesvirus 1 [16]
- Staphylococcus aureus [16]
- Thermoanaerobaculum aquaticum [16]
- Meiothermus taiwanensis [16]
- Salmonella phage p22 [16]
- Pseudomonas aeruginosa [15]
- Thermoplasma acidophilum [15]
- Cricetus cricetus [14]
- Human cytomegalovirus [14]
- Cricket paralysis virus [14]
- Hathewaya histolytica [14]
- Kluyveromyces lactis [14]
- Oryza sativa [14]
- Saccharomyces cerevisiae [14]
- Tetrahymena thermophila [14]
- Amanita phalloides [14]
- Spodoptera frugiperda [14]
- Escherichia phage lambda [13]
- Pseudomonas phage phi6 [13]
- Hepacivirus c [13]
- Taura syndrome virus [13]
- Escherichia virus su10 [13]
- Candida albicans [13]
- Dna molecule [13]
- Trypanosoma brucei [13]
- Deltainfluenzavirus influenzae [12]
- Saccharolobus solfataricus [12]
- Spinacia oleracea [12]
- Oplophorus gracilirostris [12]
- Salmonella phage p22 [11]
- Borrelia burgdorferi [11]
- Thermotoga maritima [11]
- Human herpesvirus 1 [10]
- Enterobacteria phage t4 [10]
- Synechocystis sp. pcc 6803 [10]
- Mycolicibacterium smegmatis [10]
- Photorhabdus thracensis [10]
- Methylorubrum extorquens [10]
- Komagataella pastoris [10]
- Candida albicans [10]
- Clostridioides difficile [10]
- Bombyx mori [10]
- (no species) [10]
- Rattus rattus [9]
- Acetivibrio thermocellus [9]
- Emericella variicolor [9]
- Cyanobium sp. pcc 7001 [9]
EM Method
- Single-particle [9913]
- Helical reconstruction [441]
- Subtomogram averaging [175]
- Tomography [50]
- Electron Crystallography [18]
Resolution
- < 2Å [79]
- ≥ 2Å and < 3Å [2984]
- ≥ 3Å and < 4Å [5464]
- ≥ 4Å and < 5Å [1040]
- ≥ 5Å and < 6Å [190]
- ≥ 6Å and < 8Å [330]
- ≥ 8Å and < 12Å [195]
- ≥ 12Å and < 16Å [54]
- ≥ 16Å and < 20Å [61]
- ≥ 20Å and < 30Å [93]
- ≥ 30Å [46]
Model molecular weight
- 0-50 kDa [95]
- 50-100 kDa [637]
- 100-250 kDa [3416]
- 250-500 kDa [1956]
- 500-1000 kDa [1521]
- 1-2 MDa [995]
- 2-5 MDa [984]
- 5-10 MDa [74]
- > 10 MDa [112]
Release Date
- 2026 [1491]
- 2025 [2385]
- 2024 [1916]
- 2023 [1546]
- 2022 [1165]
- 2021 [885]
- 2020 [595]
- 2019 [365]
- 2018 [277]
- 2017 [195]
- 2016 [137]
- 2015 [31]
- 2014 [42]
- 2013 [50]
- 2012 [33]
- 2011 [10]
- 2010 [16]
- 2009 [27]
- 2007 [8]
- 2006 [1]
- 2004 [2]
Author by name
- Zhang Y [447]
- Li Y [359]
- Wang Y [325]
- Wang J [306]
- Wang X [276]
- Zhang Z [276]
- Beckmann R [255]
- Li X [255]
- Cheng J [237]
- Li J [231]
- Zhang X [228]
- Xu Y [222]
- Li S [217]
- Liu Y [213]
- Chen X [206]
- Berninghausen O [197]
- Klinge S [195]
- Chen J [189]
- Li H [184]
- Xu HE [183]
- Zhang H [183]
- Wang Q [181]
- Zhang S [169]
- Shi Y [168]
- Wang H [167]
- Chen Y [166]
- Wang L [164]
- Zhang K [162]
- Liu J [160]
- Xu C [155]
- Liu Z [153]
- Li D [147]
- Jiang Y [145]
- Liu C [141]
- Li Z [137]
- Liu S [137]
- Wang M [134]
- Zhu Y [133]
- Zhang L [131]
- Zhao Y [130]
- Hurt E [128]
- Wang S [128]
- Zhou Q [125]
- Liu X [124]
- Buzovetsky O [122]
- Chen L [122]
- Wang Z [120]
- Lu Y [119]
- Zhang C [118]
- Liu L [117]
- Zhang J [117]
- Lau B [116]
- Li W [114]
- Xu J [111]
- Wu Z [110]
- Gao Y [109]
- Liu H [109]
- Yu Z [109]
- Zhu X [108]
- Thoms M [107]
- Cheng Y [106]
- Yu X [104]
- Zhang P [104]
- Wang W [103]
- Wu C [103]
- Yang X [102]
- Zhao J [102]
- Denk T [99]
- Yuan Q [97]
- Nureki O [96]
- Chen S [95]
- Liu W [94]
- Zhang W [94]
- Wu J [93]
- Yang Y [93]
- Wang MW [92]
- Yang D [91]
- Du Y [90]
- Yan C [86]
- Yang F [85]
- Urlaub H [84]
- Zheng W [84]
- Chen H [83]
- Fischer P [83]
- Mao Y [83]
- Li F [82]
- Sun J [82]
- Zhao Q [82]
- Chai P [81]
- Subramaniam S [81]
- Xu Z [81]
- Chiu W [80]
- Zhou J [80]
- Wang D [79]
- Wu M [79]
- Yan R [79]
- Zhou Y [79]
- Inoue A [78]
- Kollman JM [78]
- Cramer P [77]
Author by ORCID
- Klinge S [151]
- Beckmann R [145]
- Cheng J [113]
- Denk T [85]
- Hurt E [79]
- Xu HE [73]
- Flemming D [63]
- Thoms M [57]
- Falquet L [56]
- Xu Y [56]
- Fromm L [56]
- Zhang P [52]
- Inoue A [51]
- Yang D [51]
- Nureki O [48]
- Zhang Y [46]
- Pestova TV [46]
- Frank J [45]
- Marmorstein R [45]
- Hellen CUT [44]
- Wang MW [43]
- Berninghausen O [43]
- Yamashita K [42]
- Li H [40]
- Brown ZP [38]
- Zhang K [37]
- Rubinstein JL [37]
- Lander GC [37]
- Xu Y [35]
- Cheng Y [35]
- Ban N [35]
- Chen L [34]
- Plevka P [34]
- Kobilka BK [32]
- Xiong Y [32]
- Chai P [32]
- Wang S [32]
- Chen X [32]
- Brunger AT [31]
- Mao Y [31]
- Kollman JM [31]
- Zhang Y [31]
- Amunts A [31]
- Ehara H [31]
- Zhou ZH [31]
- Zhou Q [30]
- Sekine SI [30]
- Fuzik T [30]
- Zou S [29]
- Kurumizaka H [29]
- Wu Z [29]
- Dong Y [29]
- Chen E [29]
- Kawakami K [29]
- Kobayashi K [29]
- Wang W [29]
- Zhang S [29]
- Khan YA [29]
- Hou Y [29]
- Mao C [28]
- Roth BL [28]
- Shi Y [28]
- Narehood SM [27]
- Li F [27]
- White KI [27]
- Wang Y [27]
- Cook BD [27]
- Yan R [27]
- Vanden Broeck A [27]
- Li H [27]
- Li Y [27]
- Guo W [26]
- Lin J [26]
- Bailey EJ [26]
- Lomakin IB [26]
- He X [26]
- Du Y [26]
- Hardwick SW [26]
- Liu Z [26]
- Bai XC [26]
- Wang J [26]
- Chen J [26]
- Liu J [26]
- Sun JP [26]
- Sumikama T [26]
- Kujirai T [25]
- Liu L [25]
- Carter AP [25]
- Wang HW [25]
- Balaji A [25]
- Kato HE [25]
- Mitsutake A [25]
- Couoh-cardel S [25]
- Zhou Q [25]
- Fukuda M [25]
- Roh SH [25]
- Diao J [25]
- Yan C [24]
- Zhou CZ [24]
- Chen Y [24]
Journal
- NAT COMMUN [2159]
- NATURE [1012]
- TO BE PUBLISHED [850]
- NAT STRUCT MOL BIOL [767]
- PNAS [669]
- SCIENCE [644]
- BIORXIV [608]
- MOL CELL [517]
- SCI ADV [390]
- ELIFE [384]
- CELL [334]
- STRUCTURE [258]
- NUCLEIC ACIDS RES [245]
- CELL RES [193]
- CELL REP [178]
- EMBO J [172]
- NAT CHEM BIOL [153]
- CELL DISCOV [143]
- COMMUN BIOL [121]
- J BIOL CHEM [120]
- ACTA CRYSTALLOGR D STRUCT BIOL [108]
- J MOL BIOL [91]
- EMBO REP [83]
- J STRUCT BIOL [61]
- PLOS BIOL [61]
- SCI REP [52]
- J VIROL [44]
- PROTEIN SCI [42]
- IUCRJ [41]
- J MED CHEM [40]
- PROTEIN CELL [39]
- NAT MICROBIOL [38]
- J AM CHEM SOC [37]
- PLOS PATHOG [35]
- NAT METHODS [34]
- IMMUNITY [32]
- NAT PLANTS [25]
- ADV SCI [23]
- LIFE SCI ALLIANCE [22]
- PLOS ONE [22]
- J.MOL.CELL.CARDIOL. [21]
- J CELL BIOL [20]
- NEURON [20]
- ISCIENCE [19]
- COMMUN CHEM [17]
- MBIO [15]
- CURR BIOL [14]
- VIRUSES [14]
- FEBS OPEN BIO [13]
- FUNDAM RES [13]
- J STRUCT BIOL X [13]
- NAT CELL BIOL [13]
- BIOCHEMISTRY [12]
- RNA [12]
- FEBS J [11]
- INT J BIOL MACROMOL [11]
- INT J MOL SCI [11]
- PLANT CELL [11]
- PLANT COMMUN. [11]
- ACS CATAL [10]
- ACTA PHARMACOL.SIN. [10]
- BIOCHEM J [10]
- PNAS NEXUS [10]
- SCI BULL (BEIJING) [10]
- SIGNAL TRANSDUCT TARGET THER [10]
- ACS CHEM BIOL [9]
- ACS NANO [9]
- BIOCHEM BIOPHYS RES COMMUN [9]
- DEV CELL [9]
- GENET MED [9]
- MOL.CELL PROTEOMICS [9]
- NAT CHEM [9]
- SCI SIGNAL [9]
- ACTA PHARM SIN B [8]
- BLOOD [8]
- J CELL SCI [8]
- VIROLOGY [8]
- ANGEW CHEM INT ED ENGL [7]
- CANCER DISCOV [7]
- CELL DEATH DIFFER. [7]
- CELL HOST MICROBE [7]
- MOL PLANT [7]
- RES [7]
- ACTA NEUROPATHOL [6]
- ADV MATER [6]
- ANTIOXID REDOX SIGNAL [6]
- CELL BIOSCI [6]
- CURR RES STRUCT BIOL [6]
- FEBS LETT [6]
- HEMASPHERE [6]
- J ENZYME INHIB MED CHEM [6]
- MOL PHARMACOL [6]
- PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES USA [6]
- STRUCTURE (LONDON, ENGLAND : 1993) [6]
- VITA [6]
- ACS CENT SCI [5]
- ACTA CRYSTALLOGR F STRUCT BIOL COMMUN [5]
- BIOPHYS J [5]
- MEDICINE PLUS [5]
- NAT CARDIOVASC RES [5]
Software
- CRYOSPARC [2940]
- RELION [2680]
- CTFFIND [393]
- GCTF [276]
- PHENIX [100]
- WARP [93]
- CISTEM [86]
- FREALIGN [77]
- COOT [66]
- SPIDER [60]
- UCSF CHIMERAX [60]
- CHIMERA [43]
- UCSF CHIMERA [40]
- IMOD [39]
- EMAN [33]
- XMIPP [21]
- EMAN2 [20]
- MDFF [14]
- BSOFT [13]
- DYNAMO [13]
- ISOLDE [13]
- CRYOLO [12]
- PEET [12]
- SIMPLE [11]
- PYTOM [10]
- TOM TOOLBOX [10]
- PROTOMO [9]
- IMAGIC [8]
- JSPR, EMAN2, EMAN [8]
- APPION [7]
- AV3 [7]
- AUTO3DEM [6]
- CHIMERA, ROSETTA, PHENIX, COOT [6]
- CTFFIND3, EMAN2, RELION [6]
- EMAN, EMAN2, XMIPP [6]
- EMCLARITY [6]
- I3, PROTOMO [6]
- IMOD AND IN-HOUSE PROCEDURES [6]
- TOPAZ [6]
- AIMLESS [5]
- AMIRA [5]
- CTFFIND3 [5]
- MPSA [5]
- MPSA, EMAN, EMAN2 [5]
- SITUS [5]
- SPARX [5]
- SPHIRE [5]
- BSOFT, PFT3DR [4]
- EMAN, IMAGIC, SPIDER [4]
- IMIRS [4]
- JSPR, EMAN, EMAN2 [4]
- MOTIONCORR2 [4]
- CHIMERA, ROSETTA [3]
- CTFFIND3, RELION [3]
- CTFFIND4 [3]
- DEEPEMHANCER [3]
- DIREX [3]
- EMAN2/SPARX, MULTI-MODEL [3]
- ETOMO, FROM, IMOD, SOFTWARE [3]
- ETOMO, IMOD [3]
- FREALIX [3]
- MATLAB [3]
- MOLREP [3]
- MULTI-PATH SIMULATED ANNEALING OPTIMIZATION ALGORITHM [3]
- PFT - EM3DR [3]
- PROTOMO, IMOD [3]
- AUTO3DEM, EMAN2 [2]
- EMAN AND FREALIGN [2]
- EMAN,AUTO3DEM [2]
- ETHAN, CTFFIND3, EMAN1, EMAN2, AUTO3DEM, RELION, RESMAP [2]
- FLEX-EM [2]
- JSPR [2]
- MRC [2]
- MRC IMAGE PROCESSING PACKAGE [2]
- NAMD [2]
- POINTLESS [2]
- REFMAC [2]
- SPIDER, EMAN [2]
- SUBTOM [2]
- URO [2]
- VEDA [2]
- 2DX, BHP [1]
- ARETOMO [1]
- BOXER, CTFFIND3, CTFMIX, AUTO3DEM [1]
- BSOFT, EMAN2, SPRING [1]
- CHIMERA AND COOT [1]
- CHIMERA, IMODFIT [1]
- CHIMERA, MDFF, COOT [1]
- CHIMERA, REFMAC [1]
- CRYODRGN [1]
- CRYOS [1]
- CTFFIND3, EMAN, BOXER, IMAGIC, FPM, RELION [1]
- CTFFIND3, EMAN, BOXER, IMAGIC, FPM, SPIDER [1]
- CTFFIND3, EMAN2, AND, AUTO3DEM [1]
- CTFFIND3, RELION, IMAGIC [1]
- EMAN, BSOFT [1]
- EMAN, EMAN2, AUTO3DEM, CHIMERA [1]
- EMAN, SPIDER [1]
- EMAN, XMIPP, SPIDER, BSOFT [1]
- EMAN1 [1]
Microscope
- FEI TITAN KRIOS [5849]
- TFS KRIOS [3000]
- FEI TALOS ARCTICA [505]
- TFS GLACIOS [299]
- FEI POLARA 300 [188]
- FEI TECNAI F30 [141]
- JEOL CRYO ARM 300 [135]
- FEI TECNAI F20 [82]
- FEI TECNAI ARCTICA [75]
- FEI TITAN [62]
- TFS TALOS [31]
- FEI/PHILIPS CM300FEG/T [29]
- FEI/PHILIPS CM200FEG [27]
- FEI TECNAI 12 [22]
- JEOL 3200FSC [22]
- FEI TECNAI 20 [19]
- JEOL CRYO ARM 200 [17]
- JEOL 2010F [14]
- FEI MORGAGNI [11]
- JEOL 2200FS [10]
- FEI TECNAI SPIRIT [9]
- JEOL 1230 [8]
- TFS TITAN THEMIS [8]
- JEOL 2100F [7]
- JEOL 4000EX [7]
- JEOL 1400/HR YPS FEG [5]
- JEOL 2100 [5]
- FEI TECNAI 10 [3]
- FEI/PHILIPS CM200T [3]
- JEOL 3000SFF [3]
- JEOL 3100FFC [3]
- JEOL 3200FS [2]
- JEOL KYOTO-3000SFF [2]
- FEI/PHILIPS CM300FEG/HE [1]
- FEI/PHILIPS EM420 [1]
- JEOL 2010 [1]
- SHUIMU TOTEM 300S [1]
- TFS TALOS F200C [1]
Electron Source
- FIELD EMISSION GUN [10402]
- OTHER [108]
- LAB6 [72]
- TUNGSTEN HAIRPIN [15]
Film or detector model
- GATAN K3 6K X 4K [3369]
- GATAN K3 BIOQUANTUM 6K X 4K [2408]
- GATAN K2 SUMMIT 4K X 4K [1953]
- FEI FALCON IV 4K X 4K [1114]
- FEI FALCON III 4K X 4K [517]
- GATAN K2 QUANTUM 4K X 4K [294]
- TFS FALCON 4I 4K X 4K [229]
- FEI FALCON II 4K X 4K [221]
- GATAN K3 BIOCONTINUUM 6K X 4K [156]
- KODAK SO-163 FILM [93]
- GATAN ULTRASCAN 4000 4K X 4K [45]
- GATAN K2 BASE 4K X 4K [32]
- FEI EAGLE 4K X 4K [28]
- DIRECT ELECTRON DE-20 5K X 3K [18]
- FEI FALCON I 4K X 4K [17]
- OTHER [14]
- TVIPS TEMCAM-F416 4K X 4K [13]
- TVIPS TEMCAM-F415 4K X 4K [12]
- GENERIC CCD [9]
- GENERIC GATAN 4K X 4K [8]
- GATAN K2 4K X 4K [6]
- GENERIC CCD 2K X 2K [6]
- TVIPS TEMCAM-F224 2K X 2K [6]
- DECTRIS SINGLA 1K X 1K [5]
- GATAN K2 IS 4K X 4K [5]
- DIRECT ELECTRON DE-64 8K X 8K [4]
- GATAN ULTRASCAN 1000 2K X 2K [4]
- GENERIC TVIPS 4K X 4K [4]
- TVIPS TEMCAM-F816 8K X 8K [4]
- DIRECT ELECTRON APOLLO 4K X 4K [3]
- FEI CETA 4K X 4K [3]
- GATAN ULTRASCAN 10000 10K X 10K [3]
- GENERIC GATAN 2K X 2K [3]
- GENERIC TVIPS [2]
- AGFA SCIENTA FILM [1]
- DIRECT ELECTRON DE-12 4K X 3K [1]
- DIRECT ELECTRON DE-16 4K X 4K [1]
- FEI EAGLE 2K X 2K [1]
- GATAN ORIUS SC1000 4K X 2.7K [1]
EMPIAR Experiment type
- EMDB [532]
- FIB-SEM [19]
- CLXM [8]
- CLEM [6]
- SBF-SEM [5]
- EXCEPTION [4]
- SSET [3]
- MICROED [2]
- SXT [1]
EMPIAR Image category
- MICROGRAPHS - MULTIFRAME [398]
- PICKED PARTICLES - SINGLE FRAME - PROCESSED [153]
- MICROGRAPHS - SINGLE FRAME [143]
- PICKED PARTICLES - MULTIFRAME - PROCESSED [84]
- TILT SERIES [45]
- RECONSTRUCTED VOLUMES [20]
- PICKED PARTICLES - SINGLE FRAME - UNPROCESSED [14]
- PICKED PARTICLES - MULTIFRAME - UNPROCESSED [4]
- DIFFRACTION IMAGES [2]
- MICROGRAPHS - FOCAL PAIRS - UNPROCESSED [2]
- SUBTOMOGRAMS [2]
- ALIGNED MOVIE FRAMES (.MRCS EXTENSION), ALIGNED-AVERAGED MICROGRAPHS (.MRC EXTENSION) AND PARTICLE COORDINATES (.BOX EXTENSION) [1]
- CLASS AVERAGES [1]
- MICROGRAPHS - FOCAL PAIRS - CONTRAST INVERTED [1]
- SOFT X-RAY TOMOGRAMS [1]
- STITCHED MAPS [1]
External links
- UniProt [9802]
- PDB [9790]
- Gene Ontology [9568]
- AlphaFold DB [9483]
- PDBe-Kb [9422]
- Pfam [9141]
- InterPro [8890]
- ChEBI [6556]
- ChEMBL [6207]
- DrugBank [6028]
- Complex Portal [3632]
- EMPIAR [1069]
- EMDB [533]
- SCOP2 [215]
- CATH [141]
- BioImage Archive [14]
Similar entry percentile: 90%
Rajan KS, Yonath A
To Be Published
EM Method: Tomography
Ortmann de Percin Northumberland C, Licheva M, Dabrowski R, Gomez-Sanchez R, Berkamp S, Schonnenbeck P, Graef M, Kraft C, Sachse C
J Cell Sci (2026) [ DOI: doi:10.1242/jcs.265302 Pubmed: 42781864 ]
Resolution: 2.48 Å
EM Method: Single-particle
Liu Y, Xu P, Rivara S, Liu C, Ricci J, Ren X, Hurley JH, Ablasser A
Nature (2022) 610 pp. 761-767 [ DOI: doi:10.1038/s41586-022-05354-0 Pubmed: 36261523 ]
Resolution: 3.4 Å
EM Method: Single-particle
Burton-Smith RN, Murata K
To Be Published
Resolution: 3.47 Å
EM Method: Single-particle
Burton-Smith RN, Murata K
To Be Published
Resolution: 3.41 Å
EM Method: Single-particle
Burton-Smith RN, Murata K
To Be Published
Similar entry percentile: 72%
Solayman M, Liao YT, Calvo SE, Vacas AF, Papanastasiou M, Rivera KD, Mani D, Boyle BW, Deng FG, Betsinger CN, Carr SA, Chen MZ, Duraisingh MT, Fry MY, Goyal M, Issa TM, Kim M, Lian CG, Luce BE, Mian SY, Nguyen K, Paul AS, Samuelson J, Stefely JA, Udeshi ND, Mootha VK, Aphasizheva I, Chao LH, Aphasizhev R
Mol Cell (2026) 86 pp. 4043- [ DOI: doi:10.1016/j.molcel.2026.08.031 ]
EM Method: Tomography
Johnson CGM, Chan A, Rozum J, George A, Parvate AD, Bohutskyi P, Kim DN, Feng S, Johnson Z, Sadler N, Garcia M, Li X, Trejo J, Wu R, Sineath W, Anderson LN, Evans JE, Mehta AP, Qian WJ, Luthey-Schulten Z, Cheung MS
Biophys J (2026) [ Pubmed: 42655912 DOI: doi:10.1016/j.bpj.2026.08.020 ]
Similar entry percentile: 84%
Malik R, Johnson RE, Prakash L, Prakash S, Aggarwal AK
Nat Commun (2026) [ DOI: doi:10.1038/s41467-026-78032-8 ]
Similar entry percentile: 7%
Jiang X, Danev R, Luan Y, Nakakido M, Tsumoto K, Kikkawa M
Nucleic Acids Res (2026) [ ]
Filter By
Current Database
- EMDB [10597]
- EMPIAR [580]
Current status
- REL [11177]
Sample type
- Protein [9932]
- Complex [9609]
- Ligand [7077]
- RNA [1764]
- DNA [891]
- Cellular component [475]
- Virus [296]
- Sample [257]
- Cell [137]
- Tissue [29]
- Other [11]
Organism
- Homo sapiens [6198]
- Mus musculus [882]
- Synthetic construct [838]
- Saccharomyces cerevisiae [655]
- Rattus norvegicus [411]
- Bos taurus [392]
- Saccharomyces cerevisiae [337]
- Escherichia coli [319]
- Sus scrofa [288]
- Oryctolagus cuniculus [224]
- Escherichia coli [195]
- Severe acute respiratory syndrome coronavirus [157]
- Lama glama [147]
- Arabidopsis thaliana [132]
- Saccharomyces cerevisiae [113]
- Drosophila melanogaster [98]
- Xenopus laevis [95]
- Chaetomium thermophilum [81]
- Bacillus subtilis [61]
- Chlamydomonas reinhardtii [49]
- Gallus gallus [40]
- Schizosaccharomyces pombe [37]
- Cricetulus griseus [35]
- (no species) [35]
- Human immunodeficiency virus 1 [35]
- Mycolicibacterium smegmatis [34]
- Escherichia coli [33]
- Caenorhabditis elegans [33]
- Bacillus subtilis [32]
- Vicugna pacos [32]
- Chaetomium thermophilum [30]
- Influenza a virus [29]
- Thermococcus profundus [29]
- Aquifex aeolicus [28]
- Geobacillus stearothermophilus [26]
- Mycobacterium tuberculosis [26]
- Komagataella phaffii [26]
- Mycobacterium tuberculosis [26]
- Monkeypox virus [25]
- Plasmodium falciparum [24]
- Schizosaccharomyces pombe [22]
- Trypanosoma brucei [22]
- Trichoplusia ni [22]
- Unidentified adenovirus [21]
- Canis lupus [21]
- Escherichia virus t7 [20]
- Komagataella phaffii [20]
- Yarrowia lipolytica [20]
- Pseudomonas aeruginosa [19]
- Kluyveromyces lactis [18]
- Legionella pneumophila [18]
- Sus scrofa [18]
- Mesocricetus auratus [16]
- Human herpesvirus 1 [16]
- Staphylococcus aureus [16]
- Thermoanaerobaculum aquaticum [16]
- Meiothermus taiwanensis [16]
- Salmonella phage p22 [16]
- Pseudomonas aeruginosa [15]
- Thermoplasma acidophilum [15]
- Cricetus cricetus [14]
- Human cytomegalovirus [14]
- Cricket paralysis virus [14]
- Hathewaya histolytica [14]
- Kluyveromyces lactis [14]
- Oryza sativa [14]
- Saccharomyces cerevisiae [14]
- Tetrahymena thermophila [14]
- Amanita phalloides [14]
- Spodoptera frugiperda [14]
- Escherichia phage lambda [13]
- Pseudomonas phage phi6 [13]
- Hepacivirus c [13]
- Taura syndrome virus [13]
- Escherichia virus su10 [13]
- Candida albicans [13]
- Dna molecule [13]
- Trypanosoma brucei [13]
- Deltainfluenzavirus influenzae [12]
- Saccharolobus solfataricus [12]
- Spinacia oleracea [12]
- Oplophorus gracilirostris [12]
- Salmonella phage p22 [11]
- Borrelia burgdorferi [11]
- Thermotoga maritima [11]
- Human herpesvirus 1 [10]
- Enterobacteria phage t4 [10]
- Synechocystis sp. pcc 6803 [10]
- Mycolicibacterium smegmatis [10]
- Photorhabdus thracensis [10]
- Methylorubrum extorquens [10]
- Komagataella pastoris [10]
- Candida albicans [10]
- Clostridioides difficile [10]
- Bombyx mori [10]
- (no species) [10]
- Rattus rattus [9]
- Acetivibrio thermocellus [9]
- Emericella variicolor [9]
- Cyanobium sp. pcc 7001 [9]
EM Method
- Single-particle [9913]
- Helical reconstruction [441]
- Subtomogram averaging [175]
- Tomography [50]
- Electron Crystallography [18]
Resolution
- < 2Å [79]
- ≥ 2Å and < 3Å [2984]
- ≥ 3Å and < 4Å [5464]
- ≥ 4Å and < 5Å [1040]
- ≥ 5Å and < 6Å [190]
- ≥ 6Å and < 8Å [330]
- ≥ 8Å and < 12Å [195]
- ≥ 12Å and < 16Å [54]
- ≥ 16Å and < 20Å [61]
- ≥ 20Å and < 30Å [93]
- ≥ 30Å [46]
Model molecular weight
- 0-50 kDa [95]
- 50-100 kDa [637]
- 100-250 kDa [3416]
- 250-500 kDa [1956]
- 500-1000 kDa [1521]
- 1-2 MDa [995]
- 2-5 MDa [984]
- 5-10 MDa [74]
- > 10 MDa [112]
Release Date
- 2026 [1491]
- 2025 [2385]
- 2024 [1916]
- 2023 [1546]
- 2022 [1165]
- 2021 [885]
- 2020 [595]
- 2019 [365]
- 2018 [277]
- 2017 [195]
- 2016 [137]
- 2015 [31]
- 2014 [42]
- 2013 [50]
- 2012 [33]
- 2011 [10]
- 2010 [16]
- 2009 [27]
- 2007 [8]
- 2006 [1]
- 2004 [2]
Author by name
- Zhang Y [447]
- Li Y [359]
- Wang Y [325]
- Wang J [306]
- Wang X [276]
- Zhang Z [276]
- Beckmann R [255]
- Li X [255]
- Cheng J [237]
- Li J [231]
- Zhang X [228]
- Xu Y [222]
- Li S [217]
- Liu Y [213]
- Chen X [206]
- Berninghausen O [197]
- Klinge S [195]
- Chen J [189]
- Li H [184]
- Xu HE [183]
- Zhang H [183]
- Wang Q [181]
- Zhang S [169]
- Shi Y [168]
- Wang H [167]
- Chen Y [166]
- Wang L [164]
- Zhang K [162]
- Liu J [160]
- Xu C [155]
- Liu Z [153]
- Li D [147]
- Jiang Y [145]
- Liu C [141]
- Li Z [137]
- Liu S [137]
- Wang M [134]
- Zhu Y [133]
- Zhang L [131]
- Zhao Y [130]
- Hurt E [128]
- Wang S [128]
- Zhou Q [125]
- Liu X [124]
- Buzovetsky O [122]
- Chen L [122]
- Wang Z [120]
- Lu Y [119]
- Zhang C [118]
- Liu L [117]
- Zhang J [117]
- Lau B [116]
- Li W [114]
- Xu J [111]
- Wu Z [110]
- Gao Y [109]
- Liu H [109]
- Yu Z [109]
- Zhu X [108]
- Thoms M [107]
- Cheng Y [106]
- Yu X [104]
- Zhang P [104]
- Wang W [103]
- Wu C [103]
- Yang X [102]
- Zhao J [102]
- Denk T [99]
- Yuan Q [97]
- Nureki O [96]
- Chen S [95]
- Liu W [94]
- Zhang W [94]
- Wu J [93]
- Yang Y [93]
- Wang MW [92]
- Yang D [91]
- Du Y [90]
- Yan C [86]
- Yang F [85]
- Urlaub H [84]
- Zheng W [84]
- Chen H [83]
- Fischer P [83]
- Mao Y [83]
- Li F [82]
- Sun J [82]
- Zhao Q [82]
- Chai P [81]
- Subramaniam S [81]
- Xu Z [81]
- Chiu W [80]
- Zhou J [80]
- Wang D [79]
- Wu M [79]
- Yan R [79]
- Zhou Y [79]
- Inoue A [78]
- Kollman JM [78]
- Cramer P [77]
Author by ORCID
- Klinge S [151]
- Beckmann R [145]
- Cheng J [113]
- Denk T [85]
- Hurt E [79]
- Xu HE [73]
- Flemming D [63]
- Thoms M [57]
- Falquet L [56]
- Xu Y [56]
- Fromm L [56]
- Zhang P [52]
- Inoue A [51]
- Yang D [51]
- Nureki O [48]
- Zhang Y [46]
- Pestova TV [46]
- Frank J [45]
- Marmorstein R [45]
- Hellen CUT [44]
- Wang MW [43]
- Berninghausen O [43]
- Yamashita K [42]
- Li H [40]
- Brown ZP [38]
- Zhang K [37]
- Rubinstein JL [37]
- Lander GC [37]
- Xu Y [35]
- Cheng Y [35]
- Ban N [35]
- Chen L [34]
- Plevka P [34]
- Kobilka BK [32]
- Xiong Y [32]
- Chai P [32]
- Wang S [32]
- Chen X [32]
- Brunger AT [31]
- Mao Y [31]
- Kollman JM [31]
- Zhang Y [31]
- Amunts A [31]
- Ehara H [31]
- Zhou ZH [31]
- Zhou Q [30]
- Sekine SI [30]
- Fuzik T [30]
- Zou S [29]
- Kurumizaka H [29]
- Wu Z [29]
- Dong Y [29]
- Chen E [29]
- Kawakami K [29]
- Kobayashi K [29]
- Wang W [29]
- Zhang S [29]
- Khan YA [29]
- Hou Y [29]
- Mao C [28]
- Roth BL [28]
- Shi Y [28]
- Narehood SM [27]
- Li F [27]
- White KI [27]
- Wang Y [27]
- Cook BD [27]
- Yan R [27]
- Vanden Broeck A [27]
- Li H [27]
- Li Y [27]
- Guo W [26]
- Lin J [26]
- Bailey EJ [26]
- Lomakin IB [26]
- He X [26]
- Du Y [26]
- Hardwick SW [26]
- Liu Z [26]
- Bai XC [26]
- Wang J [26]
- Chen J [26]
- Liu J [26]
- Sun JP [26]
- Sumikama T [26]
- Kujirai T [25]
- Liu L [25]
- Carter AP [25]
- Wang HW [25]
- Balaji A [25]
- Kato HE [25]
- Mitsutake A [25]
- Couoh-cardel S [25]
- Zhou Q [25]
- Fukuda M [25]
- Roh SH [25]
- Diao J [25]
- Yan C [24]
- Zhou CZ [24]
- Chen Y [24]
Journal
- NAT COMMUN [2159]
- NATURE [1012]
- TO BE PUBLISHED [850]
- NAT STRUCT MOL BIOL [767]
- PNAS [669]
- SCIENCE [644]
- BIORXIV [608]
- MOL CELL [517]
- SCI ADV [390]
- ELIFE [384]
- CELL [334]
- STRUCTURE [258]
- NUCLEIC ACIDS RES [245]
- CELL RES [193]
- CELL REP [178]
- EMBO J [172]
- NAT CHEM BIOL [153]
- CELL DISCOV [143]
- COMMUN BIOL [121]
- J BIOL CHEM [120]
- ACTA CRYSTALLOGR D STRUCT BIOL [108]
- J MOL BIOL [91]
- EMBO REP [83]
- J STRUCT BIOL [61]
- PLOS BIOL [61]
- SCI REP [52]
- J VIROL [44]
- PROTEIN SCI [42]
- IUCRJ [41]
- J MED CHEM [40]
- PROTEIN CELL [39]
- NAT MICROBIOL [38]
- J AM CHEM SOC [37]
- PLOS PATHOG [35]
- NAT METHODS [34]
- IMMUNITY [32]
- NAT PLANTS [25]
- ADV SCI [23]
- LIFE SCI ALLIANCE [22]
- PLOS ONE [22]
- J.MOL.CELL.CARDIOL. [21]
- J CELL BIOL [20]
- NEURON [20]
- ISCIENCE [19]
- COMMUN CHEM [17]
- MBIO [15]
- CURR BIOL [14]
- VIRUSES [14]
- FEBS OPEN BIO [13]
- FUNDAM RES [13]
- J STRUCT BIOL X [13]
- NAT CELL BIOL [13]
- BIOCHEMISTRY [12]
- RNA [12]
- FEBS J [11]
- INT J BIOL MACROMOL [11]
- INT J MOL SCI [11]
- PLANT CELL [11]
- PLANT COMMUN. [11]
- ACS CATAL [10]
- ACTA PHARMACOL.SIN. [10]
- BIOCHEM J [10]
- PNAS NEXUS [10]
- SCI BULL (BEIJING) [10]
- SIGNAL TRANSDUCT TARGET THER [10]
- ACS CHEM BIOL [9]
- ACS NANO [9]
- BIOCHEM BIOPHYS RES COMMUN [9]
- DEV CELL [9]
- GENET MED [9]
- MOL.CELL PROTEOMICS [9]
- NAT CHEM [9]
- SCI SIGNAL [9]
- ACTA PHARM SIN B [8]
- BLOOD [8]
- J CELL SCI [8]
- VIROLOGY [8]
- ANGEW CHEM INT ED ENGL [7]
- CANCER DISCOV [7]
- CELL DEATH DIFFER. [7]
- CELL HOST MICROBE [7]
- MOL PLANT [7]
- RES [7]
- ACTA NEUROPATHOL [6]
- ADV MATER [6]
- ANTIOXID REDOX SIGNAL [6]
- CELL BIOSCI [6]
- CURR RES STRUCT BIOL [6]
- FEBS LETT [6]
- HEMASPHERE [6]
- J ENZYME INHIB MED CHEM [6]
- MOL PHARMACOL [6]
- PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES USA [6]
- STRUCTURE (LONDON, ENGLAND : 1993) [6]
- VITA [6]
- ACS CENT SCI [5]
- ACTA CRYSTALLOGR F STRUCT BIOL COMMUN [5]
- BIOPHYS J [5]
- MEDICINE PLUS [5]
- NAT CARDIOVASC RES [5]
Software
- CRYOSPARC [2940]
- RELION [2680]
- CTFFIND [393]
- GCTF [276]
- PHENIX [100]
- WARP [93]
- CISTEM [86]
- FREALIGN [77]
- COOT [66]
- SPIDER [60]
- UCSF CHIMERAX [60]
- CHIMERA [43]
- UCSF CHIMERA [40]
- IMOD [39]
- EMAN [33]
- XMIPP [21]
- EMAN2 [20]
- MDFF [14]
- BSOFT [13]
- DYNAMO [13]
- ISOLDE [13]
- CRYOLO [12]
- PEET [12]
- SIMPLE [11]
- PYTOM [10]
- TOM TOOLBOX [10]
- PROTOMO [9]
- IMAGIC [8]
- JSPR, EMAN2, EMAN [8]
- APPION [7]
- AV3 [7]
- AUTO3DEM [6]
- CHIMERA, ROSETTA, PHENIX, COOT [6]
- CTFFIND3, EMAN2, RELION [6]
- EMAN, EMAN2, XMIPP [6]
- EMCLARITY [6]
- I3, PROTOMO [6]
- IMOD AND IN-HOUSE PROCEDURES [6]
- TOPAZ [6]
- AIMLESS [5]
- AMIRA [5]
- CTFFIND3 [5]
- MPSA [5]
- MPSA, EMAN, EMAN2 [5]
- SITUS [5]
- SPARX [5]
- SPHIRE [5]
- BSOFT, PFT3DR [4]
- EMAN, IMAGIC, SPIDER [4]
- IMIRS [4]
- JSPR, EMAN, EMAN2 [4]
- MOTIONCORR2 [4]
- CHIMERA, ROSETTA [3]
- CTFFIND3, RELION [3]
- CTFFIND4 [3]
- DEEPEMHANCER [3]
- DIREX [3]
- EMAN2/SPARX, MULTI-MODEL [3]
- ETOMO, FROM, IMOD, SOFTWARE [3]
- ETOMO, IMOD [3]
- FREALIX [3]
- MATLAB [3]
- MOLREP [3]
- MULTI-PATH SIMULATED ANNEALING OPTIMIZATION ALGORITHM [3]
- PFT - EM3DR [3]
- PROTOMO, IMOD [3]
- AUTO3DEM, EMAN2 [2]
- EMAN AND FREALIGN [2]
- EMAN,AUTO3DEM [2]
- ETHAN, CTFFIND3, EMAN1, EMAN2, AUTO3DEM, RELION, RESMAP [2]
- FLEX-EM [2]
- JSPR [2]
- MRC [2]
- MRC IMAGE PROCESSING PACKAGE [2]
- NAMD [2]
- POINTLESS [2]
- REFMAC [2]
- SPIDER, EMAN [2]
- SUBTOM [2]
- URO [2]
- VEDA [2]
- 2DX, BHP [1]
- ARETOMO [1]
- BOXER, CTFFIND3, CTFMIX, AUTO3DEM [1]
- BSOFT, EMAN2, SPRING [1]
- CHIMERA AND COOT [1]
- CHIMERA, IMODFIT [1]
- CHIMERA, MDFF, COOT [1]
- CHIMERA, REFMAC [1]
- CRYODRGN [1]
- CRYOS [1]
- CTFFIND3, EMAN, BOXER, IMAGIC, FPM, RELION [1]
- CTFFIND3, EMAN, BOXER, IMAGIC, FPM, SPIDER [1]
- CTFFIND3, EMAN2, AND, AUTO3DEM [1]
- CTFFIND3, RELION, IMAGIC [1]
- EMAN, BSOFT [1]
- EMAN, EMAN2, AUTO3DEM, CHIMERA [1]
- EMAN, SPIDER [1]
- EMAN, XMIPP, SPIDER, BSOFT [1]
- EMAN1 [1]
Microscope
- FEI TITAN KRIOS [5849]
- TFS KRIOS [3000]
- FEI TALOS ARCTICA [505]
- TFS GLACIOS [299]
- FEI POLARA 300 [188]
- FEI TECNAI F30 [141]
- JEOL CRYO ARM 300 [135]
- FEI TECNAI F20 [82]
- FEI TECNAI ARCTICA [75]
- FEI TITAN [62]
- TFS TALOS [31]
- FEI/PHILIPS CM300FEG/T [29]
- FEI/PHILIPS CM200FEG [27]
- FEI TECNAI 12 [22]
- JEOL 3200FSC [22]
- FEI TECNAI 20 [19]
- JEOL CRYO ARM 200 [17]
- JEOL 2010F [14]
- FEI MORGAGNI [11]
- JEOL 2200FS [10]
- FEI TECNAI SPIRIT [9]
- JEOL 1230 [8]
- TFS TITAN THEMIS [8]
- JEOL 2100F [7]
- JEOL 4000EX [7]
- JEOL 1400/HR YPS FEG [5]
- JEOL 2100 [5]
- FEI TECNAI 10 [3]
- FEI/PHILIPS CM200T [3]
- JEOL 3000SFF [3]
- JEOL 3100FFC [3]
- JEOL 3200FS [2]
- JEOL KYOTO-3000SFF [2]
- FEI/PHILIPS CM300FEG/HE [1]
- FEI/PHILIPS EM420 [1]
- JEOL 2010 [1]
- SHUIMU TOTEM 300S [1]
- TFS TALOS F200C [1]
Electron Source
- FIELD EMISSION GUN [10402]
- OTHER [108]
- LAB6 [72]
- TUNGSTEN HAIRPIN [15]
Film or detector model
- GATAN K3 6K X 4K [3369]
- GATAN K3 BIOQUANTUM 6K X 4K [2408]
- GATAN K2 SUMMIT 4K X 4K [1953]
- FEI FALCON IV 4K X 4K [1114]
- FEI FALCON III 4K X 4K [517]
- GATAN K2 QUANTUM 4K X 4K [294]
- TFS FALCON 4I 4K X 4K [229]
- FEI FALCON II 4K X 4K [221]
- GATAN K3 BIOCONTINUUM 6K X 4K [156]
- KODAK SO-163 FILM [93]
- GATAN ULTRASCAN 4000 4K X 4K [45]
- GATAN K2 BASE 4K X 4K [32]
- FEI EAGLE 4K X 4K [28]
- DIRECT ELECTRON DE-20 5K X 3K [18]
- FEI FALCON I 4K X 4K [17]
- OTHER [14]
- TVIPS TEMCAM-F416 4K X 4K [13]
- TVIPS TEMCAM-F415 4K X 4K [12]
- GENERIC CCD [9]
- GENERIC GATAN 4K X 4K [8]
- GATAN K2 4K X 4K [6]
- GENERIC CCD 2K X 2K [6]
- TVIPS TEMCAM-F224 2K X 2K [6]
- DECTRIS SINGLA 1K X 1K [5]
- GATAN K2 IS 4K X 4K [5]
- DIRECT ELECTRON DE-64 8K X 8K [4]
- GATAN ULTRASCAN 1000 2K X 2K [4]
- GENERIC TVIPS 4K X 4K [4]
- TVIPS TEMCAM-F816 8K X 8K [4]
- DIRECT ELECTRON APOLLO 4K X 4K [3]
- FEI CETA 4K X 4K [3]
- GATAN ULTRASCAN 10000 10K X 10K [3]
- GENERIC GATAN 2K X 2K [3]
- GENERIC TVIPS [2]
- AGFA SCIENTA FILM [1]
- DIRECT ELECTRON DE-12 4K X 3K [1]
- DIRECT ELECTRON DE-16 4K X 4K [1]
- FEI EAGLE 2K X 2K [1]
- GATAN ORIUS SC1000 4K X 2.7K [1]
EMPIAR Experiment type
- EMDB [532]
- FIB-SEM [19]
- CLXM [8]
- CLEM [6]
- SBF-SEM [5]
- EXCEPTION [4]
- SSET [3]
- MICROED [2]
- SXT [1]
EMPIAR Image category
- MICROGRAPHS - MULTIFRAME [398]
- PICKED PARTICLES - SINGLE FRAME - PROCESSED [153]
- MICROGRAPHS - SINGLE FRAME [143]
- PICKED PARTICLES - MULTIFRAME - PROCESSED [84]
- TILT SERIES [45]
- RECONSTRUCTED VOLUMES [20]
- PICKED PARTICLES - SINGLE FRAME - UNPROCESSED [14]
- PICKED PARTICLES - MULTIFRAME - UNPROCESSED [4]
- DIFFRACTION IMAGES [2]
- MICROGRAPHS - FOCAL PAIRS - UNPROCESSED [2]
- SUBTOMOGRAMS [2]
- ALIGNED MOVIE FRAMES (.MRCS EXTENSION), ALIGNED-AVERAGED MICROGRAPHS (.MRC EXTENSION) AND PARTICLE COORDINATES (.BOX EXTENSION) [1]
- CLASS AVERAGES [1]
- MICROGRAPHS - FOCAL PAIRS - CONTRAST INVERTED [1]
- SOFT X-RAY TOMOGRAMS [1]
- STITCHED MAPS [1]
External links
- UniProt [9802]
- PDB [9790]
- Gene Ontology [9568]
- AlphaFold DB [9483]
- PDBe-Kb [9422]
- Pfam [9141]
- InterPro [8890]
- ChEBI [6556]
- ChEMBL [6207]
- DrugBank [6028]
- Complex Portal [3632]
- EMPIAR [1069]
- EMDB [533]
- SCOP2 [215]
- CATH [141]
- BioImage Archive [14]
