Filter By
Current Database
- EMDB [9757]
- EMPIAR [557]
Current status
- REL [10314]
Sample type
- Protein [9136]
- Complex [8823]
- Ligand [6397]
- RNA [1464]
- DNA [828]
- Cellular component [460]
- Virus [289]
- Sample [257]
- Cell [111]
- Tissue [23]
- Other [11]
Organism
- Homo sapiens [5714]
- Mus musculus [791]
- Synthetic construct [771]
- Saccharomyces cerevisiae [603]
- Rattus norvegicus [399]
- Bos taurus [362]
- Saccharomyces cerevisiae [308]
- Escherichia coli [290]
- Oryctolagus cuniculus [185]
- Escherichia coli [178]
- Sus scrofa [173]
- Severe acute respiratory syndrome coronavirus [142]
- Lama glama [136]
- Arabidopsis thaliana [126]
- Saccharomyces cerevisiae [112]
- Drosophila melanogaster [83]
- Chaetomium thermophilum [81]
- Xenopus laevis [75]
- Bacillus subtilis [62]
- Chlamydomonas reinhardtii [49]
- Gallus gallus [37]
- Schizosaccharomyces pombe [36]
- Cricetulus griseus [35]
- (no species) [35]
- Human immunodeficiency virus 1 [34]
- Mycolicibacterium smegmatis [34]
- Caenorhabditis elegans [33]
- Bacillus subtilis [32]
- Escherichia coli [30]
- Thermococcus profundus [29]
- Influenza a virus [28]
- Aquifex aeolicus [28]
- Vicugna pacos [28]
- Mycobacterium tuberculosis [27]
- Mycobacterium tuberculosis [26]
- Geobacillus stearothermophilus [24]
- Komagataella phaffii [24]
- Plasmodium falciparum [23]
- Monkeypox virus [22]
- Chaetomium thermophilum [21]
- Pseudomonas aeruginosa [21]
- Komagataella phaffii [21]
- Trypanosoma brucei [21]
- Escherichia virus t7 [20]
- Yarrowia lipolytica [20]
- Trichoplusia ni [19]
- Unidentified adenovirus [18]
- Kluyveromyces lactis [18]
- Legionella pneumophila [18]
- Sus scrofa [18]
- Staphylococcus aureus [17]
- Mesocricetus auratus [16]
- Human herpesvirus 1 [16]
- Thermoanaerobaculum aquaticum [16]
- Meiothermus taiwanensis [16]
- Salmonella phage p22 [16]
- Pseudomonas aeruginosa [15]
- Thermoplasma acidophilum [15]
- Cricetus cricetus [14]
- Hathewaya histolytica [14]
- Kluyveromyces lactis [14]
- Saccharomyces cerevisiae [14]
- Tetrahymena thermophila [14]
- Amanita phalloides [14]
- Escherichia phage lambda [13]
- Pseudomonas phage phi6 [13]
- Hepacivirus c [13]
- Taura syndrome virus [13]
- Escherichia virus su10 [13]
- Candida albicans [13]
- Dna molecule [13]
- Schizosaccharomyces pombe [13]
- Trypanosoma brucei [13]
- Spodoptera frugiperda [13]
- Cricket paralysis virus [12]
- Deltainfluenzavirus influenzae [12]
- Canis lupus [12]
- Human cytomegalovirus [11]
- Salmonella phage p22 [11]
- Borrelia burgdorferi [11]
- Thermotoga maritima [11]
- Oplophorus gracilirostris [11]
- Human herpesvirus 1 [10]
- Enterobacteria phage t4 [10]
- Photorhabdus thracensis [10]
- Methylorubrum extorquens [10]
- Komagataella pastoris [10]
- Candida albicans [10]
- Clostridioides difficile [10]
- Acetivibrio thermocellus [9]
- Emericella variicolor [9]
- Cyanobium sp. pcc 7001 [9]
- Deformed wing virus [9]
- Saccharomyces cerevisiae [9]
- Rauchvirus bpp1 [9]
- Alphapapillomavirus 9 [9]
- Leishmania major [9]
- Spinacia oleracea [9]
- Gluconobacter japonicus [9]
- Aquifex aeolicus [9]
EM Method
- Single-particle [9161]
- Helical reconstruction [382]
- Subtomogram averaging [148]
- Tomography [48]
- Electron Crystallography [18]
Resolution
- < 2Å [72]
- ≥ 2Å and < 3Å [2670]
- ≥ 3Å and < 4Å [5056]
- ≥ 4Å and < 5Å [988]
- ≥ 5Å and < 6Å [177]
- ≥ 6Å and < 8Å [306]
- ≥ 8Å and < 12Å [179]
- ≥ 12Å and < 16Å [52]
- ≥ 16Å and < 20Å [61]
- ≥ 20Å and < 30Å [91]
- ≥ 30Å [46]
Model molecular weight
- 0-50 kDa [93]
- 50-100 kDa [604]
- 100-250 kDa [3155]
- 250-500 kDa [1856]
- 500-1000 kDa [1383]
- 1-2 MDa [927]
- 2-5 MDa [766]
- 5-10 MDa [68]
- > 10 MDa [105]
Release Date
- 2026 [947]
- 2025 [2263]
- 2024 [1871]
- 2023 [1489]
- 2022 [1142]
- 2021 [865]
- 2020 [579]
- 2019 [356]
- 2018 [260]
- 2017 [191]
- 2016 [131]
- 2015 [31]
- 2014 [42]
- 2013 [50]
- 2012 [33]
- 2011 [10]
- 2010 [16]
- 2009 [27]
- 2007 [8]
- 2006 [1]
- 2004 [2]
Author by name
- Zhang Y [406]
- Li Y [337]
- Wang Y [303]
- Zhang Z [270]
- Wang X [264]
- Beckmann R [240]
- Li X [229]
- Cheng J [224]
- Wang J [220]
- Li J [214]
- Xu Y [208]
- Zhang X [200]
- Liu Y [195]
- Berninghausen O [193]
- Chen X [187]
- Chen J [179]
- Klinge S [179]
- Li S [179]
- Li H [177]
- Wang Q [173]
- Shi Y [169]
- Zhang H [164]
- Xu HE [163]
- Wang L [152]
- Wang H [151]
- Chen Y [150]
- Liu Z [149]
- Zhang S [146]
- Xu C [140]
- Li D [137]
- Wang M [132]
- Liu C [131]
- Jiang Y [126]
- Li Z [126]
- Liu S [126]
- Zhang K [125]
- Zhao Y [125]
- Zhou Q [125]
- Zhu Y [124]
- Buzovetsky O [122]
- Liu J [121]
- Hurt E [119]
- Liu X [117]
- Lu Y [114]
- Zhang C [111]
- Li W [110]
- Liu L [109]
- Chen L [107]
- Gao Y [107]
- Lau B [107]
- Zhu X [107]
- Wu Z [106]
- Cheng Y [105]
- Liu H [105]
- Thoms M [105]
- Wang Z [103]
- Yu Z [103]
- Yu X [100]
- Zhang L [100]
- Wang W [99]
- Denk T [97]
- Yang X [97]
- Nureki O [96]
- Xu J [96]
- Zhang J [95]
- Chen S [94]
- Wang S [94]
- Wu C [94]
- Wu J [93]
- Liu W [92]
- Zhao J [92]
- Yang D [91]
- Wang MW [89]
- Du Y [88]
- Yan C [87]
- Yuan Q [86]
- Urlaub H [83]
- Zhang W [82]
- Subramaniam S [81]
- Mao Y [80]
- Chiu W [79]
- Sun J [79]
- Xu Z [79]
- Yan R [79]
- Kollman JM [78]
- Li F [77]
- Rubinstein JL [77]
- Sun Y [77]
- Zhang P [77]
- Lei J [76]
- Zhao Q [76]
- Cramer P [75]
- Chen H [74]
- Fischer P [74]
- Dong Y [73]
- Zhou Y [73]
- Zhou ZH [73]
- Kellner N [72]
- Shen Y [72]
- Gao N [71]
Author by ORCID
- Klinge S [169]
- Beckmann R [157]
- Cheng J [120]
- Xu HE [102]
- Lau B [89]
- Denk T [86]
- Hurt E [86]
- Kellner N [72]
- Flemming D [65]
- Cheng Y [64]
- Nureki O [63]
- Yang D [60]
- Fromm L [58]
- Thoms M [57]
- Marmorstein R [57]
- Li H [56]
- Falquet L [56]
- Mao Y [56]
- Kollman JM [56]
- Xu Y [56]
- Rubinstein JL [55]
- Zhang Y [55]
- Chiu W [51]
- Gao N [51]
- Ando N [50]
- Berninghausen O [49]
- Vanden Broeck A [49]
- Wang MW [48]
- Borgnia MJ [48]
- Pestova TV [48]
- He X [47]
- Thomas WC [46]
- Xu D [46]
- Burnim AA [46]
- Frank J [44]
- Chen L [44]
- Plevka P [44]
- Yan C [43]
- Stahlberg H [43]
- Locher KP [43]
- Zou S [42]
- Mao C [42]
- Kurumizaka H [42]
- Wu Z [42]
- Zhang S [42]
- Hummer G [41]
- Dong Y [41]
- Yang W [41]
- Zhou ZH [41]
- Lima CD [41]
- Roth BL [40]
- Yamashita K [40]
- Zhu X [39]
- Lander GC [39]
- Fuzik T [38]
- Hellen CUT [38]
- Sharma V [38]
- Brunger AT [37]
- Hirst J [37]
- Bai XC [37]
- Amunts A [37]
- Brown ZP [37]
- Liu L [36]
- Hardwick SW [36]
- Zdorevskyi O [36]
- Zhuang Y [36]
- Latorre-muro P [36]
- Ehara H [36]
- Shi Y [36]
- Sekine SI [35]
- Singh K [35]
- Zhang P [35]
- Subramaniam S [35]
- Itoh Y [34]
- Prochazkova M [34]
- Chaker-margot M [34]
- Cramer P [33]
- Singh S [33]
- Zhao Q [33]
- Miller L [33]
- Shao Z [33]
- Yan R [33]
- Melcher K [33]
- Nishizawa T [32]
- Jiang Y [32]
- Chen X [32]
- Li Y [32]
- Chirgadze DY [31]
- Shirouzu M [31]
- Zhang Z [31]
- Lee CH [31]
- Li H [31]
- Sun JP [31]
- Wootten D [31]
- Carter AP [30]
- Belousoff MJ [30]
- Kochanczyk T [30]
- Ban N [30]
- Chen J [30]
- Kujirai T [29]
Journal
- NAT COMMUN [1966]
- NATURE [928]
- TO BE PUBLISHED [810]
- NAT STRUCT MOL BIOL [700]
- PNAS [616]
- SCIENCE [599]
- BIORXIV [551]
- MOL CELL [468]
- ELIFE [377]
- SCI ADV [355]
- CELL [314]
- STRUCTURE [242]
- NUCLEIC ACIDS RES [234]
- CELL RES [191]
- EMBO J [173]
- CELL REP [167]
- NAT CHEM BIOL [123]
- CELL DISCOV [119]
- COMMUN BIOL [112]
- ACTA CRYSTALLOGR D STRUCT BIOL [108]
- J BIOL CHEM [107]
- J MOL BIOL [85]
- EMBO REP [83]
- J STRUCT BIOL [59]
- PLOS BIOL [55]
- J VIROL [44]
- SCI REP [43]
- IUCRJ [35]
- J AM CHEM SOC [35]
- J MED CHEM [35]
- NAT MICROBIOL [35]
- PLOS PATHOG [35]
- NAT METHODS [33]
- PROTEIN CELL [32]
- IMMUNITY [30]
- NAT PLANTS [24]
- LIFE SCI ALLIANCE [22]
- PLOS ONE [22]
- J.MOL.CELL.CARDIOL. [21]
- NEURON [20]
- PROTEIN SCI [20]
- ADV SCI [18]
- ISCIENCE [18]
- J CELL BIOL [15]
- MBIO [15]
- VIRUSES [14]
- COMMUN CHEM [13]
- FEBS OPEN BIO [13]
- FUNDAM RES [13]
- J STRUCT BIOL X [13]
- BIOCHEMISTRY [12]
- RNA [12]
- FEBS J [11]
- NAT CELL BIOL [11]
- PLANT CELL [11]
- ACS CATAL [10]
- ACTA PHARMACOL.SIN. [10]
- CURR BIOL [10]
- PNAS NEXUS [10]
- SCI BULL (BEIJING) [10]
- ACS CHEM BIOL [9]
- ACS NANO [9]
- GENET MED [9]
- INT J MOL SCI [9]
- MOL.CELL PROTEOMICS [9]
- NAT CHEM [9]
- PLANT COMMUN. [9]
- SCI SIGNAL [9]
- SIGNAL TRANSDUCT TARGET THER [9]
- BLOOD [8]
- INT J BIOL MACROMOL [8]
- MOL PLANT [8]
- VIROLOGY [8]
- ACTA PHARM SIN B [7]
- BIOCHEM J [7]
- CELL HOST MICROBE [7]
- DEV CELL [7]
- J CELL SCI [7]
- PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES USA [7]
- ACTA NEUROPATHOL [6]
- ADV MATER [6]
- ANTIOXID REDOX SIGNAL [6]
- BIOCHEM BIOPHYS RES COMMUN [6]
- CELL BIOSCI [6]
- CURR RES STRUCT BIOL [6]
- FEBS LETT [6]
- MOL PHARMACOL [6]
- RES [6]
- STRUCTURE (LONDON, ENGLAND : 1993) [6]
- ACS CENT SCI [5]
- ACTA CRYSTALLOGR F STRUCT BIOL COMMUN [5]
- ANGEW CHEM INT ED ENGL [5]
- CANCER DISCOV [5]
- MEDICINE PLUS [5]
- NAT CARDIOVASC RES [5]
- NAT METAB [5]
- NPJ VACCINES [5]
- RES SQ [5]
- SCI TRANSL MED [5]
- BIOPHYS J [4]
Software
- CRYOSPARC [2514]
- RELION [2468]
- CTFFIND [289]
- GCTF [166]
- CISTEM [72]
- PHENIX [68]
- COOT [58]
- SPIDER [57]
- WARP [54]
- FREALIGN [51]
- CHIMERA [43]
- IMOD [38]
- EMAN [28]
- UCSF CHIMERAX [28]
- XMIPP [21]
- EMAN2 [19]
- MDFF [14]
- BSOFT [13]
- ISOLDE [12]
- PEET [12]
- CRYOLO [11]
- DYNAMO [11]
- SIMPLE [11]
- PYTOM [10]
- TOM TOOLBOX [10]
- UCSF CHIMERA [10]
- PROTOMO [9]
- IMAGIC [8]
- JSPR, EMAN2, EMAN [8]
- AV3 [7]
- AUTO3DEM [6]
- CHIMERA, ROSETTA, PHENIX, COOT [6]
- CTFFIND3, EMAN2, RELION [6]
- EMAN, EMAN2, XMIPP [6]
- EMCLARITY [6]
- I3, PROTOMO [6]
- IMOD AND IN-HOUSE PROCEDURES [6]
- TOPAZ [6]
- AIMLESS [5]
- AMIRA [5]
- CTFFIND3 [5]
- MPSA [5]
- MPSA, EMAN, EMAN2 [5]
- SITUS [5]
- SPARX [5]
- SPHIRE [5]
- BSOFT, PFT3DR [4]
- EMAN, IMAGIC, SPIDER [4]
- IMIRS [4]
- JSPR, EMAN, EMAN2 [4]
- MOTIONCORR2 [4]
- CHIMERA, ROSETTA [3]
- CTFFIND3, RELION [3]
- DIREX [3]
- EMAN2/SPARX, MULTI-MODEL [3]
- ETOMO, FROM, IMOD, SOFTWARE [3]
- ETOMO, IMOD [3]
- MATLAB [3]
- MOLREP [3]
- MULTI-PATH SIMULATED ANNEALING OPTIMIZATION ALGORITHM [3]
- PFT - EM3DR [3]
- PROTOMO, IMOD [3]
- AUTO3DEM, EMAN2 [2]
- CTFFIND4 [2]
- EMAN AND FREALIGN [2]
- EMAN,AUTO3DEM [2]
- ETHAN, CTFFIND3, EMAN1, EMAN2, AUTO3DEM, RELION, RESMAP [2]
- FLEX-EM [2]
- JSPR [2]
- MRC [2]
- MRC IMAGE PROCESSING PACKAGE [2]
- NAMD [2]
- POINTLESS [2]
- REFMAC [2]
- SPIDER, EMAN [2]
- SUBTOM [2]
- URO [2]
- VEDA [2]
- 2DX, BHP [1]
- BOXER, CTFFIND3, CTFMIX, AUTO3DEM [1]
- BSOFT, EMAN2, SPRING [1]
- CHIMERA AND COOT [1]
- CHIMERA, IMODFIT [1]
- CHIMERA, MDFF, COOT [1]
- CHIMERA, REFMAC [1]
- CRYODRGN [1]
- CTFFIND3, EMAN, BOXER, IMAGIC, FPM, RELION [1]
- CTFFIND3, EMAN, BOXER, IMAGIC, FPM, SPIDER [1]
- CTFFIND3, EMAN2, AND, AUTO3DEM [1]
- CTFFIND3, RELION, IMAGIC [1]
- DEEPEMHANCER [1]
- EMAN, BSOFT [1]
- EMAN, EMAN2, AUTO3DEM, CHIMERA [1]
- EMAN, SPIDER [1]
- EMAN, XMIPP, SPIDER, BSOFT [1]
- EMAN1 [1]
- EMAN1, EMAN2, XMIPP-2.4 [1]
- EMAN2, RELION [1]
- EMAN2, RELION-1.1, XMIPP-2.4 [1]
- EMAN2/SPARX [1]
Microscope
- FEI TITAN KRIOS [5667]
- TFS KRIOS [2529]
- FEI TALOS ARCTICA [462]
- TFS GLACIOS [265]
- FEI POLARA 300 [153]
- JEOL CRYO ARM 300 [124]
- FEI TECNAI F30 [101]
- FEI TECNAI F20 [82]
- FEI TECNAI ARCTICA [66]
- FEI TITAN [56]
- TFS TALOS [31]
- FEI/PHILIPS CM300FEG/T [29]
- FEI/PHILIPS CM200FEG [27]
- FEI TECNAI 12 [22]
- JEOL 3200FSC [21]
- FEI TECNAI 20 [19]
- JEOL 2010F [14]
- JEOL CRYO ARM 200 [13]
- JEOL 2200FS [10]
- FEI TECNAI SPIRIT [9]
- FEI MORGAGNI [8]
- JEOL 1230 [8]
- TFS TITAN THEMIS [8]
- JEOL 2100F [7]
- JEOL 4000EX [7]
- JEOL 1400/HR YPS FEG [5]
- JEOL 2100 [5]
- FEI/PHILIPS CM200T [3]
- JEOL 3000SFF [3]
- JEOL 3100FFC [3]
- JEOL 3200FS [2]
- JEOL KYOTO-3000SFF [2]
- FEI TECNAI 10 [1]
- FEI/PHILIPS CM300FEG/HE [1]
- FEI/PHILIPS EM420 [1]
- JEOL 2010 [1]
- SHUIMU TOTEM 300S [1]
- TFS TALOS F200C [1]
Electron Source
- FIELD EMISSION GUN [9570]
- OTHER [103]
- LAB6 [71]
- TUNGSTEN HAIRPIN [13]
Film or detector model
- GATAN K3 6K X 4K [3045]
- GATAN K3 BIOQUANTUM 6K X 4K [2275]
- GATAN K2 SUMMIT 4K X 4K [1844]
- FEI FALCON IV 4K X 4K [997]
- FEI FALCON III 4K X 4K [468]
- GATAN K2 QUANTUM 4K X 4K [276]
- FEI FALCON II 4K X 4K [207]
- TFS FALCON 4I 4K X 4K [184]
- GATAN K3 BIOCONTINUUM 6K X 4K [133]
- KODAK SO-163 FILM [93]
- GATAN ULTRASCAN 4000 4K X 4K [45]
- FEI EAGLE 4K X 4K [28]
- GATAN K2 BASE 4K X 4K [27]
- DIRECT ELECTRON DE-20 5K X 3K [18]
- FEI FALCON I 4K X 4K [14]
- OTHER [13]
- TVIPS TEMCAM-F416 4K X 4K [13]
- TVIPS TEMCAM-F415 4K X 4K [12]
- GENERIC CCD [9]
- GENERIC GATAN 4K X 4K [8]
- GATAN K2 4K X 4K [6]
- GENERIC CCD 2K X 2K [6]
- TVIPS TEMCAM-F224 2K X 2K [6]
- DECTRIS SINGLA 1K X 1K [5]
- GATAN K2 IS 4K X 4K [5]
- DIRECT ELECTRON DE-64 8K X 8K [4]
- GATAN ULTRASCAN 1000 2K X 2K [4]
- GENERIC TVIPS 4K X 4K [4]
- TVIPS TEMCAM-F816 8K X 8K [4]
- DIRECT ELECTRON APOLLO 4K X 4K [3]
- FEI CETA 4K X 4K [3]
- GATAN ULTRASCAN 10000 10K X 10K [3]
- GENERIC GATAN 2K X 2K [3]
- GENERIC TVIPS [2]
- AGFA SCIENTA FILM [1]
- DIRECT ELECTRON DE-10 5K X 4K [1]
- DIRECT ELECTRON DE-12 4K X 3K [1]
- DIRECT ELECTRON DE-16 4K X 4K [1]
- FEI EAGLE 2K X 2K [1]
- GATAN ORIUS SC1000 4K X 2.7K [1]
EMPIAR Experiment type
- EMDB [509]
- FIB-SEM [19]
- CLXM [8]
- CLEM [6]
- SBF-SEM [5]
- EXCEPTION [4]
- SSET [3]
- MICROED [2]
- SXT [1]
EMPIAR Image category
- MICROGRAPHS - MULTIFRAME [379]
- PICKED PARTICLES - SINGLE FRAME - PROCESSED [147]
- MICROGRAPHS - SINGLE FRAME [134]
- PICKED PARTICLES - MULTIFRAME - PROCESSED [83]
- TILT SERIES [43]
- RECONSTRUCTED VOLUMES [20]
- PICKED PARTICLES - SINGLE FRAME - UNPROCESSED [14]
- PICKED PARTICLES - MULTIFRAME - UNPROCESSED [4]
- DIFFRACTION IMAGES [2]
- SUBTOMOGRAMS [2]
- ALIGNED MOVIE FRAMES (.MRCS EXTENSION), ALIGNED-AVERAGED MICROGRAPHS (.MRC EXTENSION) AND PARTICLE COORDINATES (.BOX EXTENSION) [1]
- CLASS AVERAGES [1]
- MICROGRAPHS - FOCAL PAIRS - CONTRAST INVERTED [1]
- MICROGRAPHS - FOCAL PAIRS - UNPROCESSED [1]
- SOFT X-RAY TOMOGRAMS [1]
- STITCHED MAPS [1]
External links
- PDB [9702]
- UniProt [8986]
- PDBe-Kb [8860]
- Gene Ontology [8785]
- AlphaFold DB [8685]
- InterPro [8507]
- Pfam [8315]
- ChEBI [5879]
- ChEMBL [5524]
- DrugBank [5392]
- Complex Portal [3367]
- EMPIAR [989]
- EMDB [510]
- SCOP2 [204]
- CATH [129]
- BioImage Archive [14]
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 30wc
Q-score: 0.43
Weckener M, Le Bas A, Ward PN, Harrison PJ, Naismith JH
To Be Published
Resolution: 3.86 Å
EM Method: Single-particle
Vogt A, Kaminski AM, Pedersen LC, Naila T, Tomkinson AE, Lees-Miller SP, Kunkel TA, He Y
To Be Published
Resolution: 4.58 Å
EM Method: Single-particle
Vogt A, Kaminski AM, Pedersen LC, Naila T, Tomkinson AE, Lees-Miller SP, Kunkel TA, He Y
To Be Published
Resolution: 7.23 Å
EM Method: Single-particle
Vogt A, Kaminski AM, Pedersen LC, Naila T, Tomkinson AE, Lees-Miller SP, Kunkel TA, He Y
To Be Published
Resolution: 4.43 Å
EM Method: Single-particle
Vogt A, Kaminski AM, Pedersen LC, Naila T, Tomkinson AE, Lees-Miller SP, Kunkel TA, He Y
To Be Published
Resolution: 7.23 Å
EM Method: Single-particle
Fitted PDBs: 9ox8
Q-score: 0.194
Vogt A, Kaminski AM, Pedersen LC, Naila T, Tomkinson AE, Lees-Miller SP, Kunkel TA, He Y
To Be Published
Dataset size: 4.7 TB
Experiment type: EMDB
Kutchuashvili A, Scheleen E, Guynes G, Wu J, Chan CK, Dedon P, Iwata-Reuyl D, Swairjo MA
Nucleic Acids Res (2026) 54 [ DOI: 10.1093/nar/gkag599 Pubmed: 42312490 ]
- Final particle set
- Raw images
Dataset size: 512.1 GB
Experiment type: EMDB
Brilot AF, Korostelev AA, Ermolenko DN, Grigorieff N
Proc Natl Acad Sci USA (2013) 110 pp. 20994-20999 [ Pubmed: 24324137 DOI: 10.1073/pnas.1311423110 ]
- Single-particle images of EF-G bound 70S ribosomes
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 9row
Q-score: 0.547
Zlatohurska M, Prochazkova M, Cienikova Z, Fuzik T, Bardy P, Plevka P
To Be Published
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 9rox
Q-score: 0.519
Zlatohurska M, Prochazkova M, Cienikova Z, Fuzik T, Bardy P, Pantucek R, Plevka P
To Be Published
Filter By
Current Database
- EMDB [9757]
- EMPIAR [557]
Current status
- REL [10314]
Sample type
- Protein [9136]
- Complex [8823]
- Ligand [6397]
- RNA [1464]
- DNA [828]
- Cellular component [460]
- Virus [289]
- Sample [257]
- Cell [111]
- Tissue [23]
- Other [11]
Organism
- Homo sapiens [5714]
- Mus musculus [791]
- Synthetic construct [771]
- Saccharomyces cerevisiae [603]
- Rattus norvegicus [399]
- Bos taurus [362]
- Saccharomyces cerevisiae [308]
- Escherichia coli [290]
- Oryctolagus cuniculus [185]
- Escherichia coli [178]
- Sus scrofa [173]
- Severe acute respiratory syndrome coronavirus [142]
- Lama glama [136]
- Arabidopsis thaliana [126]
- Saccharomyces cerevisiae [112]
- Drosophila melanogaster [83]
- Chaetomium thermophilum [81]
- Xenopus laevis [75]
- Bacillus subtilis [62]
- Chlamydomonas reinhardtii [49]
- Gallus gallus [37]
- Schizosaccharomyces pombe [36]
- Cricetulus griseus [35]
- (no species) [35]
- Human immunodeficiency virus 1 [34]
- Mycolicibacterium smegmatis [34]
- Caenorhabditis elegans [33]
- Bacillus subtilis [32]
- Escherichia coli [30]
- Thermococcus profundus [29]
- Influenza a virus [28]
- Aquifex aeolicus [28]
- Vicugna pacos [28]
- Mycobacterium tuberculosis [27]
- Mycobacterium tuberculosis [26]
- Geobacillus stearothermophilus [24]
- Komagataella phaffii [24]
- Plasmodium falciparum [23]
- Monkeypox virus [22]
- Chaetomium thermophilum [21]
- Pseudomonas aeruginosa [21]
- Komagataella phaffii [21]
- Trypanosoma brucei [21]
- Escherichia virus t7 [20]
- Yarrowia lipolytica [20]
- Trichoplusia ni [19]
- Unidentified adenovirus [18]
- Kluyveromyces lactis [18]
- Legionella pneumophila [18]
- Sus scrofa [18]
- Staphylococcus aureus [17]
- Mesocricetus auratus [16]
- Human herpesvirus 1 [16]
- Thermoanaerobaculum aquaticum [16]
- Meiothermus taiwanensis [16]
- Salmonella phage p22 [16]
- Pseudomonas aeruginosa [15]
- Thermoplasma acidophilum [15]
- Cricetus cricetus [14]
- Hathewaya histolytica [14]
- Kluyveromyces lactis [14]
- Saccharomyces cerevisiae [14]
- Tetrahymena thermophila [14]
- Amanita phalloides [14]
- Escherichia phage lambda [13]
- Pseudomonas phage phi6 [13]
- Hepacivirus c [13]
- Taura syndrome virus [13]
- Escherichia virus su10 [13]
- Candida albicans [13]
- Dna molecule [13]
- Schizosaccharomyces pombe [13]
- Trypanosoma brucei [13]
- Spodoptera frugiperda [13]
- Cricket paralysis virus [12]
- Deltainfluenzavirus influenzae [12]
- Canis lupus [12]
- Human cytomegalovirus [11]
- Salmonella phage p22 [11]
- Borrelia burgdorferi [11]
- Thermotoga maritima [11]
- Oplophorus gracilirostris [11]
- Human herpesvirus 1 [10]
- Enterobacteria phage t4 [10]
- Photorhabdus thracensis [10]
- Methylorubrum extorquens [10]
- Komagataella pastoris [10]
- Candida albicans [10]
- Clostridioides difficile [10]
- Acetivibrio thermocellus [9]
- Emericella variicolor [9]
- Cyanobium sp. pcc 7001 [9]
- Deformed wing virus [9]
- Saccharomyces cerevisiae [9]
- Rauchvirus bpp1 [9]
- Alphapapillomavirus 9 [9]
- Leishmania major [9]
- Spinacia oleracea [9]
- Gluconobacter japonicus [9]
- Aquifex aeolicus [9]
EM Method
- Single-particle [9161]
- Helical reconstruction [382]
- Subtomogram averaging [148]
- Tomography [48]
- Electron Crystallography [18]
Resolution
- < 2Å [72]
- ≥ 2Å and < 3Å [2670]
- ≥ 3Å and < 4Å [5056]
- ≥ 4Å and < 5Å [988]
- ≥ 5Å and < 6Å [177]
- ≥ 6Å and < 8Å [306]
- ≥ 8Å and < 12Å [179]
- ≥ 12Å and < 16Å [52]
- ≥ 16Å and < 20Å [61]
- ≥ 20Å and < 30Å [91]
- ≥ 30Å [46]
Model molecular weight
- 0-50 kDa [93]
- 50-100 kDa [604]
- 100-250 kDa [3155]
- 250-500 kDa [1856]
- 500-1000 kDa [1383]
- 1-2 MDa [927]
- 2-5 MDa [766]
- 5-10 MDa [68]
- > 10 MDa [105]
Release Date
- 2026 [947]
- 2025 [2263]
- 2024 [1871]
- 2023 [1489]
- 2022 [1142]
- 2021 [865]
- 2020 [579]
- 2019 [356]
- 2018 [260]
- 2017 [191]
- 2016 [131]
- 2015 [31]
- 2014 [42]
- 2013 [50]
- 2012 [33]
- 2011 [10]
- 2010 [16]
- 2009 [27]
- 2007 [8]
- 2006 [1]
- 2004 [2]
Author by name
- Zhang Y [406]
- Li Y [337]
- Wang Y [303]
- Zhang Z [270]
- Wang X [264]
- Beckmann R [240]
- Li X [229]
- Cheng J [224]
- Wang J [220]
- Li J [214]
- Xu Y [208]
- Zhang X [200]
- Liu Y [195]
- Berninghausen O [193]
- Chen X [187]
- Chen J [179]
- Klinge S [179]
- Li S [179]
- Li H [177]
- Wang Q [173]
- Shi Y [169]
- Zhang H [164]
- Xu HE [163]
- Wang L [152]
- Wang H [151]
- Chen Y [150]
- Liu Z [149]
- Zhang S [146]
- Xu C [140]
- Li D [137]
- Wang M [132]
- Liu C [131]
- Jiang Y [126]
- Li Z [126]
- Liu S [126]
- Zhang K [125]
- Zhao Y [125]
- Zhou Q [125]
- Zhu Y [124]
- Buzovetsky O [122]
- Liu J [121]
- Hurt E [119]
- Liu X [117]
- Lu Y [114]
- Zhang C [111]
- Li W [110]
- Liu L [109]
- Chen L [107]
- Gao Y [107]
- Lau B [107]
- Zhu X [107]
- Wu Z [106]
- Cheng Y [105]
- Liu H [105]
- Thoms M [105]
- Wang Z [103]
- Yu Z [103]
- Yu X [100]
- Zhang L [100]
- Wang W [99]
- Denk T [97]
- Yang X [97]
- Nureki O [96]
- Xu J [96]
- Zhang J [95]
- Chen S [94]
- Wang S [94]
- Wu C [94]
- Wu J [93]
- Liu W [92]
- Zhao J [92]
- Yang D [91]
- Wang MW [89]
- Du Y [88]
- Yan C [87]
- Yuan Q [86]
- Urlaub H [83]
- Zhang W [82]
- Subramaniam S [81]
- Mao Y [80]
- Chiu W [79]
- Sun J [79]
- Xu Z [79]
- Yan R [79]
- Kollman JM [78]
- Li F [77]
- Rubinstein JL [77]
- Sun Y [77]
- Zhang P [77]
- Lei J [76]
- Zhao Q [76]
- Cramer P [75]
- Chen H [74]
- Fischer P [74]
- Dong Y [73]
- Zhou Y [73]
- Zhou ZH [73]
- Kellner N [72]
- Shen Y [72]
- Gao N [71]
Author by ORCID
- Klinge S [169]
- Beckmann R [157]
- Cheng J [120]
- Xu HE [102]
- Lau B [89]
- Denk T [86]
- Hurt E [86]
- Kellner N [72]
- Flemming D [65]
- Cheng Y [64]
- Nureki O [63]
- Yang D [60]
- Fromm L [58]
- Thoms M [57]
- Marmorstein R [57]
- Li H [56]
- Falquet L [56]
- Mao Y [56]
- Kollman JM [56]
- Xu Y [56]
- Rubinstein JL [55]
- Zhang Y [55]
- Chiu W [51]
- Gao N [51]
- Ando N [50]
- Berninghausen O [49]
- Vanden Broeck A [49]
- Wang MW [48]
- Borgnia MJ [48]
- Pestova TV [48]
- He X [47]
- Thomas WC [46]
- Xu D [46]
- Burnim AA [46]
- Frank J [44]
- Chen L [44]
- Plevka P [44]
- Yan C [43]
- Stahlberg H [43]
- Locher KP [43]
- Zou S [42]
- Mao C [42]
- Kurumizaka H [42]
- Wu Z [42]
- Zhang S [42]
- Hummer G [41]
- Dong Y [41]
- Yang W [41]
- Zhou ZH [41]
- Lima CD [41]
- Roth BL [40]
- Yamashita K [40]
- Zhu X [39]
- Lander GC [39]
- Fuzik T [38]
- Hellen CUT [38]
- Sharma V [38]
- Brunger AT [37]
- Hirst J [37]
- Bai XC [37]
- Amunts A [37]
- Brown ZP [37]
- Liu L [36]
- Hardwick SW [36]
- Zdorevskyi O [36]
- Zhuang Y [36]
- Latorre-muro P [36]
- Ehara H [36]
- Shi Y [36]
- Sekine SI [35]
- Singh K [35]
- Zhang P [35]
- Subramaniam S [35]
- Itoh Y [34]
- Prochazkova M [34]
- Chaker-margot M [34]
- Cramer P [33]
- Singh S [33]
- Zhao Q [33]
- Miller L [33]
- Shao Z [33]
- Yan R [33]
- Melcher K [33]
- Nishizawa T [32]
- Jiang Y [32]
- Chen X [32]
- Li Y [32]
- Chirgadze DY [31]
- Shirouzu M [31]
- Zhang Z [31]
- Lee CH [31]
- Li H [31]
- Sun JP [31]
- Wootten D [31]
- Carter AP [30]
- Belousoff MJ [30]
- Kochanczyk T [30]
- Ban N [30]
- Chen J [30]
- Kujirai T [29]
Journal
- NAT COMMUN [1966]
- NATURE [928]
- TO BE PUBLISHED [810]
- NAT STRUCT MOL BIOL [700]
- PNAS [616]
- SCIENCE [599]
- BIORXIV [551]
- MOL CELL [468]
- ELIFE [377]
- SCI ADV [355]
- CELL [314]
- STRUCTURE [242]
- NUCLEIC ACIDS RES [234]
- CELL RES [191]
- EMBO J [173]
- CELL REP [167]
- NAT CHEM BIOL [123]
- CELL DISCOV [119]
- COMMUN BIOL [112]
- ACTA CRYSTALLOGR D STRUCT BIOL [108]
- J BIOL CHEM [107]
- J MOL BIOL [85]
- EMBO REP [83]
- J STRUCT BIOL [59]
- PLOS BIOL [55]
- J VIROL [44]
- SCI REP [43]
- IUCRJ [35]
- J AM CHEM SOC [35]
- J MED CHEM [35]
- NAT MICROBIOL [35]
- PLOS PATHOG [35]
- NAT METHODS [33]
- PROTEIN CELL [32]
- IMMUNITY [30]
- NAT PLANTS [24]
- LIFE SCI ALLIANCE [22]
- PLOS ONE [22]
- J.MOL.CELL.CARDIOL. [21]
- NEURON [20]
- PROTEIN SCI [20]
- ADV SCI [18]
- ISCIENCE [18]
- J CELL BIOL [15]
- MBIO [15]
- VIRUSES [14]
- COMMUN CHEM [13]
- FEBS OPEN BIO [13]
- FUNDAM RES [13]
- J STRUCT BIOL X [13]
- BIOCHEMISTRY [12]
- RNA [12]
- FEBS J [11]
- NAT CELL BIOL [11]
- PLANT CELL [11]
- ACS CATAL [10]
- ACTA PHARMACOL.SIN. [10]
- CURR BIOL [10]
- PNAS NEXUS [10]
- SCI BULL (BEIJING) [10]
- ACS CHEM BIOL [9]
- ACS NANO [9]
- GENET MED [9]
- INT J MOL SCI [9]
- MOL.CELL PROTEOMICS [9]
- NAT CHEM [9]
- PLANT COMMUN. [9]
- SCI SIGNAL [9]
- SIGNAL TRANSDUCT TARGET THER [9]
- BLOOD [8]
- INT J BIOL MACROMOL [8]
- MOL PLANT [8]
- VIROLOGY [8]
- ACTA PHARM SIN B [7]
- BIOCHEM J [7]
- CELL HOST MICROBE [7]
- DEV CELL [7]
- J CELL SCI [7]
- PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES USA [7]
- ACTA NEUROPATHOL [6]
- ADV MATER [6]
- ANTIOXID REDOX SIGNAL [6]
- BIOCHEM BIOPHYS RES COMMUN [6]
- CELL BIOSCI [6]
- CURR RES STRUCT BIOL [6]
- FEBS LETT [6]
- MOL PHARMACOL [6]
- RES [6]
- STRUCTURE (LONDON, ENGLAND : 1993) [6]
- ACS CENT SCI [5]
- ACTA CRYSTALLOGR F STRUCT BIOL COMMUN [5]
- ANGEW CHEM INT ED ENGL [5]
- CANCER DISCOV [5]
- MEDICINE PLUS [5]
- NAT CARDIOVASC RES [5]
- NAT METAB [5]
- NPJ VACCINES [5]
- RES SQ [5]
- SCI TRANSL MED [5]
- BIOPHYS J [4]
Software
- CRYOSPARC [2514]
- RELION [2468]
- CTFFIND [289]
- GCTF [166]
- CISTEM [72]
- PHENIX [68]
- COOT [58]
- SPIDER [57]
- WARP [54]
- FREALIGN [51]
- CHIMERA [43]
- IMOD [38]
- EMAN [28]
- UCSF CHIMERAX [28]
- XMIPP [21]
- EMAN2 [19]
- MDFF [14]
- BSOFT [13]
- ISOLDE [12]
- PEET [12]
- CRYOLO [11]
- DYNAMO [11]
- SIMPLE [11]
- PYTOM [10]
- TOM TOOLBOX [10]
- UCSF CHIMERA [10]
- PROTOMO [9]
- IMAGIC [8]
- JSPR, EMAN2, EMAN [8]
- AV3 [7]
- AUTO3DEM [6]
- CHIMERA, ROSETTA, PHENIX, COOT [6]
- CTFFIND3, EMAN2, RELION [6]
- EMAN, EMAN2, XMIPP [6]
- EMCLARITY [6]
- I3, PROTOMO [6]
- IMOD AND IN-HOUSE PROCEDURES [6]
- TOPAZ [6]
- AIMLESS [5]
- AMIRA [5]
- CTFFIND3 [5]
- MPSA [5]
- MPSA, EMAN, EMAN2 [5]
- SITUS [5]
- SPARX [5]
- SPHIRE [5]
- BSOFT, PFT3DR [4]
- EMAN, IMAGIC, SPIDER [4]
- IMIRS [4]
- JSPR, EMAN, EMAN2 [4]
- MOTIONCORR2 [4]
- CHIMERA, ROSETTA [3]
- CTFFIND3, RELION [3]
- DIREX [3]
- EMAN2/SPARX, MULTI-MODEL [3]
- ETOMO, FROM, IMOD, SOFTWARE [3]
- ETOMO, IMOD [3]
- MATLAB [3]
- MOLREP [3]
- MULTI-PATH SIMULATED ANNEALING OPTIMIZATION ALGORITHM [3]
- PFT - EM3DR [3]
- PROTOMO, IMOD [3]
- AUTO3DEM, EMAN2 [2]
- CTFFIND4 [2]
- EMAN AND FREALIGN [2]
- EMAN,AUTO3DEM [2]
- ETHAN, CTFFIND3, EMAN1, EMAN2, AUTO3DEM, RELION, RESMAP [2]
- FLEX-EM [2]
- JSPR [2]
- MRC [2]
- MRC IMAGE PROCESSING PACKAGE [2]
- NAMD [2]
- POINTLESS [2]
- REFMAC [2]
- SPIDER, EMAN [2]
- SUBTOM [2]
- URO [2]
- VEDA [2]
- 2DX, BHP [1]
- BOXER, CTFFIND3, CTFMIX, AUTO3DEM [1]
- BSOFT, EMAN2, SPRING [1]
- CHIMERA AND COOT [1]
- CHIMERA, IMODFIT [1]
- CHIMERA, MDFF, COOT [1]
- CHIMERA, REFMAC [1]
- CRYODRGN [1]
- CTFFIND3, EMAN, BOXER, IMAGIC, FPM, RELION [1]
- CTFFIND3, EMAN, BOXER, IMAGIC, FPM, SPIDER [1]
- CTFFIND3, EMAN2, AND, AUTO3DEM [1]
- CTFFIND3, RELION, IMAGIC [1]
- DEEPEMHANCER [1]
- EMAN, BSOFT [1]
- EMAN, EMAN2, AUTO3DEM, CHIMERA [1]
- EMAN, SPIDER [1]
- EMAN, XMIPP, SPIDER, BSOFT [1]
- EMAN1 [1]
- EMAN1, EMAN2, XMIPP-2.4 [1]
- EMAN2, RELION [1]
- EMAN2, RELION-1.1, XMIPP-2.4 [1]
- EMAN2/SPARX [1]
Microscope
- FEI TITAN KRIOS [5667]
- TFS KRIOS [2529]
- FEI TALOS ARCTICA [462]
- TFS GLACIOS [265]
- FEI POLARA 300 [153]
- JEOL CRYO ARM 300 [124]
- FEI TECNAI F30 [101]
- FEI TECNAI F20 [82]
- FEI TECNAI ARCTICA [66]
- FEI TITAN [56]
- TFS TALOS [31]
- FEI/PHILIPS CM300FEG/T [29]
- FEI/PHILIPS CM200FEG [27]
- FEI TECNAI 12 [22]
- JEOL 3200FSC [21]
- FEI TECNAI 20 [19]
- JEOL 2010F [14]
- JEOL CRYO ARM 200 [13]
- JEOL 2200FS [10]
- FEI TECNAI SPIRIT [9]
- FEI MORGAGNI [8]
- JEOL 1230 [8]
- TFS TITAN THEMIS [8]
- JEOL 2100F [7]
- JEOL 4000EX [7]
- JEOL 1400/HR YPS FEG [5]
- JEOL 2100 [5]
- FEI/PHILIPS CM200T [3]
- JEOL 3000SFF [3]
- JEOL 3100FFC [3]
- JEOL 3200FS [2]
- JEOL KYOTO-3000SFF [2]
- FEI TECNAI 10 [1]
- FEI/PHILIPS CM300FEG/HE [1]
- FEI/PHILIPS EM420 [1]
- JEOL 2010 [1]
- SHUIMU TOTEM 300S [1]
- TFS TALOS F200C [1]
Electron Source
- FIELD EMISSION GUN [9570]
- OTHER [103]
- LAB6 [71]
- TUNGSTEN HAIRPIN [13]
Film or detector model
- GATAN K3 6K X 4K [3045]
- GATAN K3 BIOQUANTUM 6K X 4K [2275]
- GATAN K2 SUMMIT 4K X 4K [1844]
- FEI FALCON IV 4K X 4K [997]
- FEI FALCON III 4K X 4K [468]
- GATAN K2 QUANTUM 4K X 4K [276]
- FEI FALCON II 4K X 4K [207]
- TFS FALCON 4I 4K X 4K [184]
- GATAN K3 BIOCONTINUUM 6K X 4K [133]
- KODAK SO-163 FILM [93]
- GATAN ULTRASCAN 4000 4K X 4K [45]
- FEI EAGLE 4K X 4K [28]
- GATAN K2 BASE 4K X 4K [27]
- DIRECT ELECTRON DE-20 5K X 3K [18]
- FEI FALCON I 4K X 4K [14]
- OTHER [13]
- TVIPS TEMCAM-F416 4K X 4K [13]
- TVIPS TEMCAM-F415 4K X 4K [12]
- GENERIC CCD [9]
- GENERIC GATAN 4K X 4K [8]
- GATAN K2 4K X 4K [6]
- GENERIC CCD 2K X 2K [6]
- TVIPS TEMCAM-F224 2K X 2K [6]
- DECTRIS SINGLA 1K X 1K [5]
- GATAN K2 IS 4K X 4K [5]
- DIRECT ELECTRON DE-64 8K X 8K [4]
- GATAN ULTRASCAN 1000 2K X 2K [4]
- GENERIC TVIPS 4K X 4K [4]
- TVIPS TEMCAM-F816 8K X 8K [4]
- DIRECT ELECTRON APOLLO 4K X 4K [3]
- FEI CETA 4K X 4K [3]
- GATAN ULTRASCAN 10000 10K X 10K [3]
- GENERIC GATAN 2K X 2K [3]
- GENERIC TVIPS [2]
- AGFA SCIENTA FILM [1]
- DIRECT ELECTRON DE-10 5K X 4K [1]
- DIRECT ELECTRON DE-12 4K X 3K [1]
- DIRECT ELECTRON DE-16 4K X 4K [1]
- FEI EAGLE 2K X 2K [1]
- GATAN ORIUS SC1000 4K X 2.7K [1]
EMPIAR Experiment type
- EMDB [509]
- FIB-SEM [19]
- CLXM [8]
- CLEM [6]
- SBF-SEM [5]
- EXCEPTION [4]
- SSET [3]
- MICROED [2]
- SXT [1]
EMPIAR Image category
- MICROGRAPHS - MULTIFRAME [379]
- PICKED PARTICLES - SINGLE FRAME - PROCESSED [147]
- MICROGRAPHS - SINGLE FRAME [134]
- PICKED PARTICLES - MULTIFRAME - PROCESSED [83]
- TILT SERIES [43]
- RECONSTRUCTED VOLUMES [20]
- PICKED PARTICLES - SINGLE FRAME - UNPROCESSED [14]
- PICKED PARTICLES - MULTIFRAME - UNPROCESSED [4]
- DIFFRACTION IMAGES [2]
- SUBTOMOGRAMS [2]
- ALIGNED MOVIE FRAMES (.MRCS EXTENSION), ALIGNED-AVERAGED MICROGRAPHS (.MRC EXTENSION) AND PARTICLE COORDINATES (.BOX EXTENSION) [1]
- CLASS AVERAGES [1]
- MICROGRAPHS - FOCAL PAIRS - CONTRAST INVERTED [1]
- MICROGRAPHS - FOCAL PAIRS - UNPROCESSED [1]
- SOFT X-RAY TOMOGRAMS [1]
- STITCHED MAPS [1]
External links
- PDB [9702]
- UniProt [8986]
- PDBe-Kb [8860]
- Gene Ontology [8785]
- AlphaFold DB [8685]
- InterPro [8507]
- Pfam [8315]
- ChEBI [5879]
- ChEMBL [5524]
- DrugBank [5392]
- Complex Portal [3367]
- EMPIAR [989]
- EMDB [510]
- SCOP2 [204]
- CATH [129]
- BioImage Archive [14]
