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POLC

Filter By

Current Database

  • EMDB [7]

Current status

  • REL [7]

Sample type

  • Complex [7]
  • DNA [7]
  • Ligand [7]
  • Protein [7]

Organism

  • Enterococcus faecium [3]
  • Pyrococcus abyssi [3]
  • Escherichia coli [3]
  • Pyrococcus abyssi [1]

EM Method

  • Single-particle [7]

Resolution

  • ≥ 2Å and < 3Å [2]
  • ≥ 3Å and < 4Å [4]
  • ≥ 6Å and < 8Å [1]

Model molecular weight

  • 100-250 kDa [4]
  • 250-500 kDa [3]

Release Date

  • 2025 [3]
  • 2023 [3]
  • 2019 [1]

Author by name

  • Delarue M [4]
  • Sauguet L [4]
  • Betancurt-anzola L [3]
  • Gardner AF [3]
  • Lamers MH [3]
  • Martinez-carranza M [3]
  • Smits WK [3]
  • Urem M [3]
  • Zatopek KM [3]
  • Beguin P [1]
  • Brule S [1]
  • Carroni M [1]
  • Henneke G [1]
  • Henry E [1]
  • Lindahl E [1]
  • Pehau-arnaudet G [1]
  • Raia P [1]

Author by ORCID

  • Sauguet L [4]
  • Zatopek KM [3]
  • Lamers MH [3]
  • Smits WK [3]
  • Urem M [3]
  • Delarue M [3]
  • Pehau-arnaudet G [1]
  • Henry E [1]
  • Henneke G [1]
  • Carroni M [1]
  • Brule S [1]
  • Raia P [1]

Journal

  • NAT COMMUN [3]
  • TO BE PUBLISHED [3]
  • PLOS BIOL [1]

Software

  • CRYOSPARC [1]

Microscope

  • TFS KRIOS [6]
  • FEI TITAN KRIOS [1]

Electron Source

  • FIELD EMISSION GUN [7]

Film or detector model

  • GATAN K3 BIOQUANTUM 6K X 4K [6]
  • GATAN K2 QUANTUM 4K X 4K [1]

External links

  • ChEBI [7]
  • ChEMBL [7]
  • DrugBank [7]
  • PDB [7]
  • UniProt [7]
  • AlphaFold DB [4]
  • Gene Ontology [4]
  • InterPro [4]
  • PDBe-Kb [4]
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Showing 1 - 7 of 7. Page 1 of 1
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EMD-53270
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DNA polymerase with inhibitor
Release date: Sept. 24, 2025
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 9qpc
Q-score: 0.551

Lamers MH, Urem M, Smits WK

To Be Published

EMD-53319
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DNA polymerase with inhibitor 2
Release date: Sept. 24, 2025
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 9qrl
Q-score: 0.492

Lamers MH, Urem M, Smits WK

To Be Published

EMD-53320
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DNA polymerase without DNA or inhibitor
Release date: Sept. 24, 2025
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 9qrn
Q-score: 0.499

Lamers MH, Urem M, Smits WK

To Be Published

EMD-17815
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Pyrococcus abyssi DNA polymerase D PolD in its editing mode bound to a primer/template substrate containing a mismatch
Release date: Dec. 20, 2023
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 8ppt
Q-score: 0.55

Betancurt-Anzola L, Martinez-Carranza M, Delarue M, Zatopek KM, Gardner AF, Sauguet L

Nat Commun (2023) 14 pp. 8306-8306 [ Pubmed: 38097591 DOI: doi:10.1038/s41467-023-44125-x ]

EMD-17816
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Pyrococcus abyssi DNA polymerase D PolD in its editing mode bound to a primer/template substrate containing three consecutive mismatches
Release date: Dec. 20, 2023
Resolution: 3.02 Å
EM Method: Single-particle
Fitted PDBs: 8ppu
Q-score: 0.532

Betancurt-Anzola L, Martinez-Carranza M, Delarue M, Zatopek KM, Gardner AF, Sauguet L

Nat Commun (2023) 14 pp. 8306-8306 [ Pubmed: 38097591 DOI: doi:10.1038/s41467-023-44125-x ]

EMD-17817
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3D View
Intermediate conformer of Pyrococcus abyssi DNA polymerase D PolD bound to a primer/template substrate containing three consecutive mismatches
Release date: Dec. 20, 2023
Resolution: 3.02 Å
EM Method: Single-particle
Fitted PDBs: 8ppv
Q-score: 0.547

Betancurt-Anzola L, Martinez-Carranza M, Delarue M, Zatopek KM, Gardner AF, Sauguet L

Nat Commun (2023) 14 pp. 8306-8306 [ Pubmed: 38097591 DOI: doi:10.1038/s41467-023-44125-x ]

EMD-0244
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3D View
Cryo-EM map of DNA polymerase D from Pyrococcus abyssi in complex with DNA
Release date: Jan. 30, 2019
Resolution: 7.1 Å
EM Method: Single-particle
Fitted PDBs: 6hms
Q-score: 0.146

Raia P, Carroni M, Henry E, Pehau-Arnaudet G, Brule S, Beguin P, Henneke G, Lindahl E, Delarue M, Sauguet L

PLoS Biol (2019) 17 pp. e3000122-e3000122 [ Pubmed: 30657780 DOI: doi:10.1371/journal.pbio.3000122 ]

Sort by: Download
Showing 1 - 7 of 7. Page 1 of 1
Display:
Statistics
×

Download










































Preview first 10
Download

Filter By

Current Database

  • EMDB [7]

Current status

  • REL [7]

Sample type

  • Complex [7]
  • DNA [7]
  • Ligand [7]
  • Protein [7]

Organism

  • Enterococcus faecium [3]
  • Pyrococcus abyssi [3]
  • Escherichia coli [3]
  • Pyrococcus abyssi [1]

EM Method

  • Single-particle [7]

Resolution

  • ≥ 2Å and < 3Å [2]
  • ≥ 3Å and < 4Å [4]
  • ≥ 6Å and < 8Å [1]

Model molecular weight

  • 100-250 kDa [4]
  • 250-500 kDa [3]

Release Date

  • 2025 [3]
  • 2023 [3]
  • 2019 [1]

Author by name

  • Delarue M [4]
  • Sauguet L [4]
  • Betancurt-anzola L [3]
  • Gardner AF [3]
  • Lamers MH [3]
  • Martinez-carranza M [3]
  • Smits WK [3]
  • Urem M [3]
  • Zatopek KM [3]
  • Beguin P [1]
  • Brule S [1]
  • Carroni M [1]
  • Henneke G [1]
  • Henry E [1]
  • Lindahl E [1]
  • Pehau-arnaudet G [1]
  • Raia P [1]

Author by ORCID

  • Sauguet L [4]
  • Zatopek KM [3]
  • Lamers MH [3]
  • Smits WK [3]
  • Urem M [3]
  • Delarue M [3]
  • Pehau-arnaudet G [1]
  • Henry E [1]
  • Henneke G [1]
  • Carroni M [1]
  • Brule S [1]
  • Raia P [1]

Journal

  • NAT COMMUN [3]
  • TO BE PUBLISHED [3]
  • PLOS BIOL [1]

Software

  • CRYOSPARC [1]

Microscope

  • TFS KRIOS [6]
  • FEI TITAN KRIOS [1]

Electron Source

  • FIELD EMISSION GUN [7]

Film or detector model

  • GATAN K3 BIOQUANTUM 6K X 4K [6]
  • GATAN K2 QUANTUM 4K X 4K [1]

External links

  • ChEBI [7]
  • ChEMBL [7]
  • DrugBank [7]
  • PDB [7]
  • UniProt [7]
  • AlphaFold DB [4]
  • Gene Ontology [4]
  • InterPro [4]
  • PDBe-Kb [4]