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LEICA KF80

Filter By

Current Database

  • EMDB [41]

Current status

  • REL [41]

Sample type

  • Sample [34]
  • Protein [23]
  • Virus [11]
  • Cellular component [7]
  • Complex [6]
  • Ligand [4]

Organism

  • Homo sapiens [7]
  • Sus scrofa [7]
  • Chlamydomonas reinhardtii [5]
  • Rattus norvegicus [4]
  • Rous sarcoma virus [3]
  • Euglena gracilis [2]
  • Myxococcus xanthus [2]
  • Mus musculus [1]
  • Human herpesvirus 1 [1]
  • Human herpesvirus 1 [1]
  • Avian leukosis virus [1]
  • Caldalkalibacillus thermarum [1]
  • Pseudomonas sp. [1]
  • Alphapapillomavirus 9 [1]
  • Senecavirus a [1]

EM Method

  • Single-particle [29]
  • Electron Crystallography [11]
  • Helical reconstruction [1]

Resolution

  • ≥ 2Å and < 3Å [1]
  • ≥ 3Å and < 4Å [3]
  • ≥ 4Å and < 5Å [2]
  • ≥ 5Å and < 6Å [1]
  • ≥ 6Å and < 8Å [4]
  • ≥ 8Å and < 12Å [11]
  • ≥ 16Å and < 20Å [5]
  • ≥ 20Å and < 30Å [7]
  • ≥ 30Å [7]

Model molecular weight

  • 100-250 kDa [9]
  • 250-500 kDa [4]
  • 500-1000 kDa [1]
  • 5-10 MDa [1]
  • > 10 MDa [1]

Release Date

  • 2024 [1]
  • 2022 [4]
  • 2018 [1]
  • 2017 [2]
  • 2015 [3]
  • 2014 [6]
  • 2013 [11]
  • 2012 [6]
  • 2011 [3]
  • 2008 [1]
  • 2006 [3]

Author by name

  • Fujiyoshi Y [16]
  • Tani K [15]
  • Cheng N [14]
  • Steven AC [14]
  • Heymann JB [11]
  • Abe K [7]
  • Nemecek D [6]
  • Oshima A [6]
  • Kikkawa M [5]
  • Oda T [5]
  • Yagi T [5]
  • Yanagisawa HA [5]
  • Craven RC [4]
  • Hayashida K [4]
  • Hirano H [4]
  • Hiroaki Y [4]
  • Kobayashi K [4]
  • Kuzuya M [4]
  • Mahmood MI [4]
  • Mindich L [4]
  • Qiao J [4]
  • Suzuki H [4]
  • Tama F [4]
  • Terada T [4]
  • Watanabe M [4]
  • Beuron F [3]
  • Cardone G [3]
  • England M [3]
  • Fontana J [3]
  • Freed EO [3]
  • Freemont PS [3]
  • Huang R [3]
  • Huang RK [3]
  • Keller PW [3]
  • Kondo H [3]
  • Waki K [3]
  • Wall JS [3]
  • Winkler DC [3]
  • Zhang X [3]
  • Aksyuk AA [2]
  • Briggs LC [2]
  • Cliff MJ [2]
  • Cone A [2]
  • Dreveny I [2]
  • Friedrich T [2]
  • Hirokawa N [2]
  • Hoiczyk E [2]
  • Inukai S [2]
  • Isaacson RL [2]
  • Ito Y [2]
  • Kamegawa A [2]
  • Kaneko Y [2]
  • Ladbury JE [2]
  • Lam AS [2]
  • Matthews SJ [2]
  • Mchugh CA [2]
  • Mckeown C [2]
  • Mineta K [2]
  • Newcomb WW [2]
  • Nicholson BJ [2]
  • Nitta R [2]
  • Ogura T [2]
  • Pye VE [2]
  • Sato C [2]
  • Smock A [2]
  • Sosinsky GE [2]
  • Toloue MM [2]
  • Trus BL [2]
  • Tsukita S [2]
  • Uji M [2]
  • Wallis R [2]
  • Yajima H [2]
  • Yamazaki Y [2]
  • Yuan X [2]
  • Asano Y [1]
  • Bostina M [1]
  • Brown JC [1]
  • Buck CB [1]
  • Burga L [1]
  • Cook GM [1]
  • Dearborn AD [1]
  • Dvoretzky I [1]
  • Flynn TC [1]
  • Gardner EE [1]
  • Homa FL [1]
  • Inoue S [1]
  • Irie K [1]
  • Kajava AV [1]
  • Langen R [1]
  • Li X-D [1]
  • Li XD [1]
  • Lowy DR [1]
  • Ma J [1]
  • Marekov L [1]
  • Mcmillan DG [1]
  • Miles LA [1]
  • Miyano H [1]
  • Mizukoshi T [1]
  • Morikawa M [1]
  • Moyer AL [1]

Author by ORCID

  • Tani K [15]
  • Fujiyoshi Y [11]
  • Heymann JB [11]
  • Oshima A [6]
  • Abe K [6]
  • Kikkawa M [5]
  • Oda T [5]
  • Yagi T [5]
  • Yanagisawa HA [5]
  • Kuzuya M [4]
  • Watanabe M [4]
  • Mahmood MI [4]
  • Terada T [4]
  • Tama F [4]
  • Suzuki H [3]
  • Zhang X [3]
  • Freemont PS [3]
  • Fontana J [3]
  • Winkler DC [3]
  • Cardone G [3]
  • Sato C [2]
  • Ogura T [2]
  • Pye VE [2]
  • Aksyuk AA [2]
  • Mineta K [2]
  • Ladbury JE [2]
  • Nitta R [2]
  • Cliff MJ [2]
  • Wallis R [2]
  • Isaacson RL [2]
  • Matthews SJ [2]
  • Dreveny I [2]
  • Rudin CM [1]
  • Numoto N [1]
  • Mcmillan DG [1]
  • Purdy JG [1]
  • Tsai CJ [1]
  • Cook GM [1]
  • Li XD [1]
  • Poirier JT [1]
  • Kajava AV [1]
  • Shimokawa J [1]
  • Schertler GF [1]
  • Irie K [1]
  • Dearborn AD [1]
  • Yamaguchi H [1]
  • Okada Y [1]
  • Buck CB [1]
  • Takahashi K [1]
  • Miles LA [1]
  • Bostina M [1]

Journal

  • J MOL BIOL [8]
  • CURR BIOL [5]
  • EMBO J [5]
  • SCI SIGNAL [4]
  • J BIOL CHEM [3]
  • J VIROL [3]
  • MBIO [2]
  • NAT COMMUN [2]
  • PNAS [2]
  • J CELL BIOL [1]
  • J CLIN INV [1]
  • J.BIOCHEM. [1]
  • MICROSCOPY [1]
  • MOL CELL [1]
  • NATURE [1]
  • SCI REP [1]

Software

  • MRC [11]
  • BSOFT [10]
  • RELION [6]
  • FREALIGN [5]
  • IMAGIC [3]
  • SITUS [3]
  • CHIMERA [2]
  • AUTO3DEM [1]
  • CHIMERA, MODELLER [1]
  • CHIMERA, PYMOL, VMD, NAMD, MDFF, BSOFT [1]
  • CNS [1]
  • CTFFIND [1]
  • EMAN, BSOFT, PFT2, EM3DR2 [1]
  • MATLAB, IMAGEV [1]
  • MATLAB, IMAGICV [1]
  • PFT2, EM3DR2 [1]

Microscope

  • FEI/PHILIPS CM200FEG [15]
  • JEOL KYOTO-3000SFF [11]
  • JEOL 2010F [7]
  • JEOL CRYO ARM 300 [4]
  • FEI POLARA 300 [1]
  • FEI/PHILIPS CM200FEG/ST [1]
  • JEOL 2200FS [1]
  • JEOL 3000SFF [1]

Electron Source

  • FIELD EMISSION GUN [41]

Film or detector model

  • KODAK SO-163 FILM [32]
  • GATAN K3 6K X 4K [3]
  • GATAN K2 SUMMIT 4K X 4K [2]
  • GATAN ULTRASCAN 1000 2K X 2K [1]
  • TVIPS TEMCAM-F416 4K X 4K [1]

External links

  • AlphaFold DB [16]
  • PDB [16]
  • UniProt [16]
  • PDBe-Kb [14]
  • Gene Ontology [11]
  • InterPro [10]
  • Pfam [5]
  • ChEBI [4]
  • EMPIAR [4]
  • ChEMBL [1]
  • Complex Portal [1]
  • DrugBank [1]
Sort by: Download
Showing 1 - 10 of 41. Page 1 of 5
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EMD-36635
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3D View
Structure of arginine oxidase from Pseudomonas sp. TRU 7192
Release date: June 26, 2024
Resolution: 2.34 Å
EM Method: Single-particle
Fitted PDBs: 8jt7
Q-score: 0.689

Yamaguchi H, Takahashi K, Numoto N, Suzuki H, Tatsumi M, Kamegawa A, Nishikawa K, Asano Y, Mizukoshi T, Miyano H, Fujiyoshi Y, Sugiki M

J.Biochem. (2025) 177 pp. 27-36 [ Pubmed: 39420599 DOI: doi:10.1093/jb/mvae070 ]

EMD-32768
Download Map
3D View
Raw data
EMPIAR-10760
Cryo-EM structure of the N-terminal deletion mutant of human pannexin-1 in a nanodisc
Release date: Feb. 16, 2022
Resolution: 4.5 Å
EM Method: Single-particle
Fitted PDBs: 7wsv
Q-score: 0.325

Kuzuya M, Hirano H, Hayashida K, Watanabe M, Kobayashi K, Terada T, Mahmood MI, Tama F, Tani K, Fujiyoshi Y, Oshima A

Sci Signal (2022) 15 pp. eabg6941-eabg6941 [ Pubmed: 35133866 DOI: doi:10.1126/scisignal.abg6941 ]

EMD-31489
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3D View
Raw data
EMPIAR-10757
Cryo-EM structure of human pannexin-1 in a nanodisc
Release date: Jan. 26, 2022
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 7f8j
Q-score: 0.48

Kuzuya M, Hirano H, Hayashida K, Watanabe M, Kobayashi K, Terada T, Mahmood MI, Tama F, Tani K, Fujiyoshi Y, Oshima A

Sci Signal (2022) 15 pp. eabg6941-eabg6941 [ Pubmed: 35133866 DOI: doi:10.1126/scisignal.abg6941 ]

EMD-31490
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3D View
Raw data
EMPIAR-10758
Human pannexin-1 showing a conformational change in the N-terminal domain and blocked pore
Release date: Jan. 26, 2022
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 7f8n
Q-score: 0.488

Kuzuya M, Hirano H, Hayashida K, Watanabe M, Kobayashi K, Terada T, Mahmood MI, Tama F, Tani K, Fujiyoshi Y, Oshima A

Sci Signal (2022) 15 pp. eabg6941-eabg6941 [ Pubmed: 35133866 DOI: doi:10.1126/scisignal.abg6941 ]

EMD-31491
Download Map
3D View
Raw data
EMPIAR-10759
Cryo-EM structure of the C-terminal deletion mutant of human PANX1 in a nanodisc
Release date: Jan. 26, 2022
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 7f8o
Q-score: 0.444

Kuzuya M, Hirano H, Hayashida K, Watanabe M, Kobayashi K, Terada T, Mahmood MI, Tama F, Tani K, Fujiyoshi Y, Oshima A

Sci Signal (2022) 15 pp. eabg6941-eabg6941 [ Pubmed: 35133866 DOI: doi:10.1126/scisignal.abg6941 ]

EMD-8607
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3D View
Herpes Simplex Virion Primary Enveloped Virion
Release date: Jan. 24, 2018
Resolution: 35.0 Å
EM Method: Single-particle

Newcomb WW, Fontana J, Winkler DC, Cheng N, Heymann JB, Steven AC

mBio (2017) 8 [ Pubmed: 28611252 DOI: doi:10.1128/mBio.00825-17 ]

EMD-3303
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Cryo-EM reconstruction of Seneca VAlley Virus - receptor complex
Release date: Oct. 11, 2017
Resolution: 18.0 Å
EM Method: Single-particle

Miles LA, Burga L, Gardner EE, Bostina M, Poirier JT, Rudin CM

J Clin Inv (2017) 8 pp. 2957-2967 [ DOI: doi:10.1172/JCI93472 Pubmed: 28650343 ]

EMD-6799
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PIG GASTRIC H /K - ATPASE IN COMPLEX WITH BYK99
Release date: Aug. 9, 2017
Resolution: 6.5 Å
EM Method: Electron Crystallography
Fitted PDBs: 5y0b
Q-score: 0.115

Abe K, Shimokawa J, Naito M, Munson K, Vagin O, Sachs G, Suzuki H, Tani K, Fujiyoshi Y

Sci Rep (2017) 7 pp. 6632-6632 [ DOI: doi:10.1038/s41598-017-06698-8 Pubmed: 28747707 ]

EMD-3214
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crystal structure of AQP4 bound to AZA
Release date: Dec. 30, 2015
Resolution: 5.0 Å
EM Method: Electron Crystallography

Kamegawa A, Hiroaki Y, Tani K, Fujiyoshi Y

Microscopy (2016) 65 pp. 177-184 [ DOI: doi:10.1093/jmicro/dfv368 Pubmed: 26908838 ]

EMD-6482
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Cryo-electron microscopy of alpha Synuclein amyloid fibrils
Release date: Dec. 16, 2015
Resolution: 40.0 Å
EM Method: Helical reconstruction

Dearborn AD, Wall JS, Cheng N, Heymann JB, Kajava AV, Varkey J, Langen R, Steven AC

J Biol Chem (2016) 291 pp. 2310-2318 [ DOI: doi:10.1074/jbc.M115.698787 Pubmed: 26644467 ]

Sort by: Download
Showing 1 - 10 of 41. Page 1 of 5
Display:
Statistics
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Preview first 10
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Filter By

Current Database

  • EMDB [41]

Current status

  • REL [41]

Sample type

  • Sample [34]
  • Protein [23]
  • Virus [11]
  • Cellular component [7]
  • Complex [6]
  • Ligand [4]

Organism

  • Homo sapiens [7]
  • Sus scrofa [7]
  • Chlamydomonas reinhardtii [5]
  • Rattus norvegicus [4]
  • Rous sarcoma virus [3]
  • Euglena gracilis [2]
  • Myxococcus xanthus [2]
  • Mus musculus [1]
  • Human herpesvirus 1 [1]
  • Human herpesvirus 1 [1]
  • Avian leukosis virus [1]
  • Caldalkalibacillus thermarum [1]
  • Pseudomonas sp. [1]
  • Alphapapillomavirus 9 [1]
  • Senecavirus a [1]

EM Method

  • Single-particle [29]
  • Electron Crystallography [11]
  • Helical reconstruction [1]

Resolution

  • ≥ 2Å and < 3Å [1]
  • ≥ 3Å and < 4Å [3]
  • ≥ 4Å and < 5Å [2]
  • ≥ 5Å and < 6Å [1]
  • ≥ 6Å and < 8Å [4]
  • ≥ 8Å and < 12Å [11]
  • ≥ 16Å and < 20Å [5]
  • ≥ 20Å and < 30Å [7]
  • ≥ 30Å [7]

Model molecular weight

  • 100-250 kDa [9]
  • 250-500 kDa [4]
  • 500-1000 kDa [1]
  • 5-10 MDa [1]
  • > 10 MDa [1]

Release Date

  • 2024 [1]
  • 2022 [4]
  • 2018 [1]
  • 2017 [2]
  • 2015 [3]
  • 2014 [6]
  • 2013 [11]
  • 2012 [6]
  • 2011 [3]
  • 2008 [1]
  • 2006 [3]

Author by name

  • Fujiyoshi Y [16]
  • Tani K [15]
  • Cheng N [14]
  • Steven AC [14]
  • Heymann JB [11]
  • Abe K [7]
  • Nemecek D [6]
  • Oshima A [6]
  • Kikkawa M [5]
  • Oda T [5]
  • Yagi T [5]
  • Yanagisawa HA [5]
  • Craven RC [4]
  • Hayashida K [4]
  • Hirano H [4]
  • Hiroaki Y [4]
  • Kobayashi K [4]
  • Kuzuya M [4]
  • Mahmood MI [4]
  • Mindich L [4]
  • Qiao J [4]
  • Suzuki H [4]
  • Tama F [4]
  • Terada T [4]
  • Watanabe M [4]
  • Beuron F [3]
  • Cardone G [3]
  • England M [3]
  • Fontana J [3]
  • Freed EO [3]
  • Freemont PS [3]
  • Huang R [3]
  • Huang RK [3]
  • Keller PW [3]
  • Kondo H [3]
  • Waki K [3]
  • Wall JS [3]
  • Winkler DC [3]
  • Zhang X [3]
  • Aksyuk AA [2]
  • Briggs LC [2]
  • Cliff MJ [2]
  • Cone A [2]
  • Dreveny I [2]
  • Friedrich T [2]
  • Hirokawa N [2]
  • Hoiczyk E [2]
  • Inukai S [2]
  • Isaacson RL [2]
  • Ito Y [2]
  • Kamegawa A [2]
  • Kaneko Y [2]
  • Ladbury JE [2]
  • Lam AS [2]
  • Matthews SJ [2]
  • Mchugh CA [2]
  • Mckeown C [2]
  • Mineta K [2]
  • Newcomb WW [2]
  • Nicholson BJ [2]
  • Nitta R [2]
  • Ogura T [2]
  • Pye VE [2]
  • Sato C [2]
  • Smock A [2]
  • Sosinsky GE [2]
  • Toloue MM [2]
  • Trus BL [2]
  • Tsukita S [2]
  • Uji M [2]
  • Wallis R [2]
  • Yajima H [2]
  • Yamazaki Y [2]
  • Yuan X [2]
  • Asano Y [1]
  • Bostina M [1]
  • Brown JC [1]
  • Buck CB [1]
  • Burga L [1]
  • Cook GM [1]
  • Dearborn AD [1]
  • Dvoretzky I [1]
  • Flynn TC [1]
  • Gardner EE [1]
  • Homa FL [1]
  • Inoue S [1]
  • Irie K [1]
  • Kajava AV [1]
  • Langen R [1]
  • Li X-D [1]
  • Li XD [1]
  • Lowy DR [1]
  • Ma J [1]
  • Marekov L [1]
  • Mcmillan DG [1]
  • Miles LA [1]
  • Miyano H [1]
  • Mizukoshi T [1]
  • Morikawa M [1]
  • Moyer AL [1]

Author by ORCID

  • Tani K [15]
  • Fujiyoshi Y [11]
  • Heymann JB [11]
  • Oshima A [6]
  • Abe K [6]
  • Kikkawa M [5]
  • Oda T [5]
  • Yagi T [5]
  • Yanagisawa HA [5]
  • Kuzuya M [4]
  • Watanabe M [4]
  • Mahmood MI [4]
  • Terada T [4]
  • Tama F [4]
  • Suzuki H [3]
  • Zhang X [3]
  • Freemont PS [3]
  • Fontana J [3]
  • Winkler DC [3]
  • Cardone G [3]
  • Sato C [2]
  • Ogura T [2]
  • Pye VE [2]
  • Aksyuk AA [2]
  • Mineta K [2]
  • Ladbury JE [2]
  • Nitta R [2]
  • Cliff MJ [2]
  • Wallis R [2]
  • Isaacson RL [2]
  • Matthews SJ [2]
  • Dreveny I [2]
  • Rudin CM [1]
  • Numoto N [1]
  • Mcmillan DG [1]
  • Purdy JG [1]
  • Tsai CJ [1]
  • Cook GM [1]
  • Li XD [1]
  • Poirier JT [1]
  • Kajava AV [1]
  • Shimokawa J [1]
  • Schertler GF [1]
  • Irie K [1]
  • Dearborn AD [1]
  • Yamaguchi H [1]
  • Okada Y [1]
  • Buck CB [1]
  • Takahashi K [1]
  • Miles LA [1]
  • Bostina M [1]

Journal

  • J MOL BIOL [8]
  • CURR BIOL [5]
  • EMBO J [5]
  • SCI SIGNAL [4]
  • J BIOL CHEM [3]
  • J VIROL [3]
  • MBIO [2]
  • NAT COMMUN [2]
  • PNAS [2]
  • J CELL BIOL [1]
  • J CLIN INV [1]
  • J.BIOCHEM. [1]
  • MICROSCOPY [1]
  • MOL CELL [1]
  • NATURE [1]
  • SCI REP [1]

Software

  • MRC [11]
  • BSOFT [10]
  • RELION [6]
  • FREALIGN [5]
  • IMAGIC [3]
  • SITUS [3]
  • CHIMERA [2]
  • AUTO3DEM [1]
  • CHIMERA, MODELLER [1]
  • CHIMERA, PYMOL, VMD, NAMD, MDFF, BSOFT [1]
  • CNS [1]
  • CTFFIND [1]
  • EMAN, BSOFT, PFT2, EM3DR2 [1]
  • MATLAB, IMAGEV [1]
  • MATLAB, IMAGICV [1]
  • PFT2, EM3DR2 [1]

Microscope

  • FEI/PHILIPS CM200FEG [15]
  • JEOL KYOTO-3000SFF [11]
  • JEOL 2010F [7]
  • JEOL CRYO ARM 300 [4]
  • FEI POLARA 300 [1]
  • FEI/PHILIPS CM200FEG/ST [1]
  • JEOL 2200FS [1]
  • JEOL 3000SFF [1]

Electron Source

  • FIELD EMISSION GUN [41]

Film or detector model

  • KODAK SO-163 FILM [32]
  • GATAN K3 6K X 4K [3]
  • GATAN K2 SUMMIT 4K X 4K [2]
  • GATAN ULTRASCAN 1000 2K X 2K [1]
  • TVIPS TEMCAM-F416 4K X 4K [1]

External links

  • AlphaFold DB [16]
  • PDB [16]
  • UniProt [16]
  • PDBe-Kb [14]
  • Gene Ontology [11]
  • InterPro [10]
  • Pfam [5]
  • ChEBI [4]
  • EMPIAR [4]
  • ChEMBL [1]
  • Complex Portal [1]
  • DrugBank [1]