Happy Holidays and New year from the EMDB! Please be advised that the EMDB team will be operating at reduced capacity between December 15th - January 12th. With this in mind we would ask that you be prepared for longer reply times through both our helpdesk system and the OneDep deposition system. well done on a productive 2025, wishing you all the best and we will see you in 2026!
Filter By
Current Database
- EMDB [1777]
Current status
- REL [1777]
Sample type
- Protein [871]
- Complex [776]
- Sample [717]
- Virus [302]
- Ligand [273]
- Cellular component [269]
- Cell [148]
- RNA [122]
- DNA [31]
- Other [4]
- Tissue [4]
- Em label [1]
Organism
- Homo sapiens [371]
- Escherichia coli [187]
- Mus musculus [114]
- Saccharomyces cerevisiae [110]
- Bos taurus [106]
- Mycoplasma pneumoniae [63]
- Human immunodeficiency virus 1 [57]
- Oryctolagus cuniculus [56]
- Torpedo marmorata [47]
- Synthetic construct [42]
- Sus scrofa [36]
- Chlamydomonas reinhardtii [26]
- Lama glama [26]
- Rattus norvegicus [24]
- Enterobacteria phage t4 [19]
- Gallus gallus [19]
- Borrelia burgdorferi [18]
- Methanospirillum hungatei [17]
- Drosophila melanogaster [17]
- Carboxydothermus hydrogenoformans [16]
- Human herpesvirus 8 [15]
- Saccharomyces cerevisiae [14]
- Escherichia coli [14]
- Hepatitis b virus [12]
- Adeno-associated dependoparvovirus a [11]
- Escherichia phage ms2 [11]
- Azotobacter vinelandii [10]
- Neurospora crassa [10]
- Simian immunodeficiency virus [9]
- Streptomyces griseus [8]
- Xenopus laevis [8]
- Sus scrofa [8]
- Camelus dromedarius [8]
- Salmonella phage p22 [7]
- Bacillus phage phi29 [7]
- Carnivore protoparvovirus 1 [7]
- Synechococcus elongatus [7]
- Plasmodium falciparum [7]
- Strongylocentrotus purpuratus [7]
- Equus caballus [7]
- Rotavirus a [6]
- Human immunodeficiency virus 1 [6]
- Tobacco mosaic virus [6]
- Agricanvirus ray [6]
- Plasmodium falciparum [6]
- Tetrahymena thermophila [6]
- Dengue virus [5]
- Enterovirus c [5]
- Dengue virus [5]
- Acanthamoeba polyphaga mimivirus [5]
- Pseudomonas phage 201phi2-1 [5]
- Human mastadenovirus c [5]
- Teranympha mirabilis [5]
- Thermus thermophilus [5]
- Haloarcula hispanica virus sh1 [5]
- Dictyostelium discoideum [5]
- Trichonympha agilis [5]
- (no species) [4]
- Pseudomonas virus prd1 [4]
- Pseudoalteromonas phage pm2 [4]
- Escherichia virus t7 [4]
- Mouse mammary tumor virus [4]
- Barley stripe mosaic virus [4]
- Phage gifsy-2 [4]
- Gemmatimonas phototrophica [4]
- Pseudomonas phage phikz [4]
- Thermoplasma acidophilum [4]
- Thermus thermophilus [4]
- Escherichia phage ms2 [4]
- Human herpesvirus 6b [4]
- Trichonympha sp. [4]
- Adeno-associated dependoparvovirus a [4]
- Human herpesvirus 8 [4]
- Human herpesvirus 1 [3]
- Epstein-barr virus (strain gd1) [3]
- Shigella phage sf6 [3]
- Primate erythroparvovirus 1 [3]
- Avian coronavirus [3]
- Human respiratory syncytial virus [3]
- Rift valley fever phlebovirus [3]
- Parechovirus a [3]
- Enterovirus b [3]
- Enterovirus b [3]
- Enterovirus c [3]
- Red clover necrotic mosaic virus [3]
- Zaire ebolavirus [3]
- Streptococcus pneumoniae [3]
- Leptospira interrogans [3]
- Bacterium [3]
- Lethocerus indicus [3]
- Borrelia burgdorferi [3]
- Pyrococcus furiosus [3]
- Pseudomonas virus el [3]
- Ephydatia fluviatilis [3]
- Varicellovirus suidalpha1 [3]
- Spinacia oleracea [3]
- Arabidopsis thaliana [3]
- Enterovirus a [3]
- Grammostola rosea [3]
- Escherichia coli [3]
EM Method
- Single-particle [1103]
- Subtomogram averaging [393]
- Helical reconstruction [153]
- Tomography [119]
- Electron Crystallography [9]
Resolution
- < 2Å [11]
- ≥ 2Å and < 3Å [140]
- ≥ 3Å and < 4Å [293]
- ≥ 4Å and < 5Å [123]
- ≥ 5Å and < 6Å [48]
- ≥ 6Å and < 8Å [128]
- ≥ 8Å and < 12Å [270]
- ≥ 12Å and < 16Å [141]
- ≥ 16Å and < 20Å [84]
- ≥ 20Å and < 30Å [177]
- ≥ 30Å [223]
Model molecular weight
- 0-50 kDa [19]
- 50-100 kDa [35]
- 100-250 kDa [130]
- 250-500 kDa [135]
- 500-1000 kDa [72]
- 1-2 MDa [50]
- 2-5 MDa [87]
- 5-10 MDa [30]
- > 10 MDa [35]
Release Date
- 2025 [163]
- 2024 [201]
- 2023 [105]
- 2022 [97]
- 2021 [166]
- 2020 [99]
- 2019 [79]
- 2018 [59]
- 2017 [63]
- 2016 [74]
- 2015 [99]
- 2014 [39]
- 2013 [83]
- 2012 [67]
- 2011 [62]
- 2010 [68]
- 2009 [79]
- 2008 [27]
- 2007 [41]
- 2006 [30]
- 2005 [20]
- 2004 [19]
- 2003 [30]
- 2002 [7]
Author by name
- Lyumkis D [113]
- Lander GC [99]
- Zeev-ben-mordehai T [77]
- Leung MR [73]
- Mahamid J [63]
- Xue L [63]
- Brown A [62]
- Huang W [62]
- Zeng J [62]
- Zhang R [62]
- Liu J [61]
- Rossmann MG [55]
- Butcher SJ [54]
- Rappsilber J [53]
- Cramer P [49]
- Lenz S [49]
- Tegunov D [49]
- Roelofs MC [48]
- Unwin N [47]
- Zhou ZH [45]
- Villa E [44]
- Bork P [43]
- Heck AJR [43]
- Hevler JF [42]
- Rabuck-gibbons JN [42]
- Williamson JR [42]
- Zenezini Chiozzi R [42]
- Dutcher SK [41]
- Fischer N [41]
- Rodnina MV [41]
- Aricescu AR [40]
- Malinauskas T [40]
- Medalia O [40]
- Mihaylov DB [40]
- Nicastro D [39]
- Wang X [39]
- Forster F [38]
- Zimmermann-kogadeeva M [38]
- Saibil HR [37]
- Li Z [36]
- Passos DO [35]
- Chipman PR [34]
- Grunewald K [34]
- Tan YZ [34]
- Shan Z [33]
- Taylor KA [33]
- Ward AB [33]
- Aiyer S [32]
- Faller WJ [31]
- Fedry J [31]
- Fronik S [31]
- Mechulam Y [31]
- Schmitt E [31]
- Silva J [31]
- Vanevic M [31]
- Des Georges A [31]
- Baumeister W [30]
- Chan KH [30]
- Grotjahn DA [30]
- Chen W [29]
- Clare DK [29]
- Herzik Jr Ma [29]
- Suslov S [28]
- Agbandje-mckenna M [27]
- Alkuraya AF [27]
- Benowitz AB [27]
- Choudhry AE [27]
- Chung CW [27]
- Curnutt NM [27]
- Dai H [27]
- Dippon VN [27]
- Jurewicz AJ [27]
- Kabir F [27]
- Mckenna R [27]
- Musetti C [27]
- Queisser MA [27]
- Rizvi Z [27]
- Schneck JL [27]
- Tao XB [27]
- Wendler P [27]
- Woo CM [27]
- Wu M [27]
- Xu W [27]
- Baker TS [26]
- Chowdhury S [26]
- Shi Y [26]
- Sindelar CV [25]
- Anderson JR [24]
- Bowman VD [24]
- Hu B [24]
- Hull JA [24]
- Mietzsch M [24]
- Niu Q [24]
- Noteborn WEM [24]
- Sali A [24]
- Sun C [24]
- Zhang Z [24]
- Baldwin PR [23]
- Barad BA [23]
- Benner SA [23]
Author by ORCID
- Lyumkis D [85]
- Leung MR [72]
- Mahamid J [63]
- Xue L [63]
- Lander GC [62]
- Brown A [61]
- Zeng J [61]
- Rappsilber J [53]
- Butcher SJ [52]
- Cramer P [49]
- Lenz S [49]
- Roelofs MC [48]
- Bork P [43]
- Rabuck-gibbons JN [42]
- Heck AJR [42]
- Williamson JR [42]
- Zenezini Chiozzi R [42]
- Fischer N [41]
- Mihaylov DB [40]
- Malinauskas T [39]
- Aricescu AR [39]
- Zimmermann-kogadeeva M [38]
- Forster F [37]
- Tan YZ [34]
- Zeev-ben-mordehai T [34]
- Rodnina MV [34]
- Chipman PR [33]
- Grunewald K [32]
- Faller WJ [31]
- Des Georges A [31]
- Mechulam Y [31]
- Fronik S [31]
- Aiyer S [30]
- Shan Z [30]
- Clare DK [29]
- Medalia O [29]
- Passos DO [28]
- Wendler P [27]
- Baker TS [26]
- Herzik Jr Ma [26]
- Grotjahn DA [23]
- Sun C [23]
- Chowdhury S [23]
- Hoshika S [23]
- Petrychenko V [23]
- Noel JAP [23]
- Mckenna R [23]
- Wang D [23]
- Oh J [23]
- Niu Q [23]
- Noteborn WEM [23]
- Huang W [23]
- Zhang R [23]
- Nicastro D [22]
- Guo Q [22]
- Echeverria I [22]
- Kollman JM [21]
- Bottcher B [21]
- Grigorieff N [20]
- Orlova EV [20]
- Hagen WJH [19]
- Guichard P [19]
- Ranson NA [18]
- Dai X [18]
- Boehringer D [18]
- Murphy BJ [17]
- Laurinmaki P [17]
- Pfeil-gardiner O [17]
- Hoenger A [17]
- Wu M [17]
- Griffin PR [17]
- Watanabe T [17]
- Forli S [17]
- Gonczy P [17]
- Gouaux E [17]
- Shima S [17]
- Battisti AJ [17]
- Prazak V [16]
- Ruickoldt J [16]
- Kreibich J [16]
- Duffus BR [16]
- Huiskonen JT [16]
- Le Guennec M [16]
- Dobbek H [16]
- Jeoung JH [16]
- Leimkuhler S [16]
- Briggs JA [16]
- Ge J [15]
- Stockley PG [15]
- Goehring A [15]
- Dodonova SO [15]
- Fu G [15]
- Elferich J [15]
- Lucic V [15]
- Matsui A [15]
- Bezler A [14]
- Gilbert RJ [14]
- Carragher B [14]
- Spahn CMT [14]
- Nazarov S [14]
Journal
- NATURE [180]
- PNAS [160]
- NAT STRUCT MOL BIOL [139]
- STRUCTURE [137]
- NAT COMMUN [131]
- BIORXIV [105]
- CELL [104]
- SCIENCE [93]
- J VIROL [90]
- TO BE PUBLISHED [87]
- ELIFE [78]
- J MOL BIOL [71]
- MOL CELL [71]
- EMBO J [63]
- J STRUCT BIOL [40]
- SCI ADV [30]
- J CELL BIOL [26]
- ACTA CRYSTALLOGR D STRUCT BIOL [17]
- MOL BIOL CELL [17]
- PLOS PATHOG [17]
- NAT CATAL [16]
- VIROLOGY [16]
- CELL REP [15]
- J BIOL CHEM [14]
- EMBO REP [13]
- PLOS ONE [12]
- NAT MICROBIOL [11]
- NAT CELL BIOL [10]
- FEBS LETT [9]
- MICROLIFE [9]
- NAT METHODS [8]
- DEV CELL [7]
- PLOS BIOL [7]
- INT J BIOL MACROMOL [6]
- J BACTERIOL [6]
- SCI REP [6]
- LIFE SCI ALLIANCE [5]
- BIOCHEM J [4]
- BLOOD [4]
- CELL CYCLE [4]
- IUCRJ [4]
- J CELL SCI [4]
- NUCLEIC ACIDS RES [4]
- PROTEIN SCI [4]
- BIOCHEMISTRY [3]
- COMMUN BIOL [3]
- CURR BIOL [3]
- FASEB J [3]
- FRONT MOL BIOSCI [3]
- MBIO [3]
- PHYS BIOL [3]
- PLOS GENET [3]
- J STRUCT BIOL X [2]
- METHODS [2]
- MOL MICROBIOL [2]
- TRAFFIC [2]
- ANGEW CHEM INT ED ENGL [1]
- BIOCHEM BIOPHYS RES COMMUN [1]
- BIOPHYS J [1]
- CELL HOST MICROBE [1]
- COMPUT CRYST NEWSL [1]
- CYTOSKELETON [1]
- FRONT CELL DEV BIOL [1]
- ISCIENCE [1]
- J GEN VIROL [1]
- J PHYS CHEM B [1]
- MICROSCOPY [1]
- NAT CHEM [1]
- VIRUS RES [1]
- VIRUSES [1]
Software
- RELION [527]
- CRYOSPARC [253]
- IMOD [147]
- CTFFIND [127]
- SPIDER [89]
- FREALIGN [81]
- CHIMERA [80]
- WARP [71]
- PEET [52]
- EMAN [32]
- GCTF [32]
- PYTOM [29]
- AUTO3DEM [28]
- PROTOMO [27]
- MATLAB [26]
- MRC [22]
- IMAGIC [21]
- PHENIX [20]
- DYNAMO [19]
- EMFIT [18]
- ETOMO [16]
- IMAGIC, CUSTOM, SPIDER [16]
- TOMOALIGN [15]
- CTFFIND3 [11]
- EMAN2 [11]
- GAP [11]
- IMOD, PROTOMO [11]
- IMOD, RAPTOR, PROTOMO [11]
- O [11]
- TOM [11]
- TOM TOOLBOX [11]
- UCSF CHIMERA [11]
- URO [11]
- CISTEM [10]
- IMAGIC-5, SPIDER [10]
- PHOELIX, SUPRIM [10]
- SITUS [10]
- XMIPP [9]
- EMPFT EM3DR [8]
- FREALIX [8]
- IMIRS [8]
- CTFPHASEFLIP [7]
- IMAGIC, SPIDER [7]
- IMOD, PROTOMO, I3, EMAN [7]
- IMOD, TOM, AV3 [7]
- PFT2, EM3DR2, POR, P3DR [7]
- PHOELIX [7]
- SPIDER, IHRSR [7]
- SPIDER, TOM_TOOLBOX [7]
- CRYOLO [6]
- I3, PROTOMO [6]
- IMAGIC-5 [6]
- IMOD, PRIISM/IVE [6]
- XMIPP, ML, TOMO [6]
- AMIRA [5]
- AV3 [5]
- BSOFT [5]
- BSOFT, EMAN2, RELION, SPIDER, IHRSR [5]
- COOT, SPDBV, REFMAC5 [5]
- EMPFT, POR, P3DR [5]
- IMAGIC, EMAN, FREALIGN, SPIDER, GAP [5]
- SPIDER, IMAGIC, GAP, CNS, XPLOR [5]
- SPIDER, WELLMAP [5]
- TOM, AV3 [5]
- CHIMERA, FLEX-EM [4]
- EM [4]
- EMAN, EMAN2 [4]
- EMAN, IMAGIC, SPIDER [4]
- EMBL, P3DR [4]
- EMBL-ICOS, MRC [4]
- ETOMO, IMOD [4]
- FLEX-EM [4]
- IHRSR [4]
- IMAGIC SPIDER MRC [4]
- IMOD, ETOMO, , PEET , SPIDER [4]
- IMOD, PEET [4]
- IMOD, PEET, BSOFT [4]
- PFT [4]
- PFT - EM3DR [4]
- PFT2, EM3DR2 [4]
- PROJALIGN [4]
- RELION, CTFFIND3 [4]
- SPIDER, EMAN2 [4]
- SPIDER,FREALIGN [4]
- SPIDER/WEB [4]
- SPRING [4]
- XMIPP, FREALIGN [4]
- 3DMOD [3]
- CNS [3]
- CTFFIND3, LABEL AND SPIDER [3]
- CTFFIND3, RELION1.3 [3]
- DIREX [3]
- EMAN, EMAN2, RELION [3]
- ETOMO, FROM, IMOD, SOFTWARE [3]
- FOLDHUNTER [3]
- FREALIGN, IMAGIC [3]
- IMAGIC, RELION [3]
- IMIRS, EMAN1 [3]
- MANUAL [3]
- MDFF [3]
Microscope
- FEI TITAN KRIOS [699]
- FEI TECNAI F20 [186]
- FEI TALOS ARCTICA [185]
- FEI POLARA 300 [143]
- TFS KRIOS [142]
- FEI TECNAI F30 [75]
- FEI/PHILIPS CM200FEG [70]
- FEI/PHILIPS CM300FEG/T [70]
- FEI TECNAI 20 [42]
- FEI/PHILIPS CM120T [23]
- FEI/PHILIPS CM200FEG/ST [17]
- JEOL 4000EX [17]
- TFS GLACIOS [17]
- JEOL 2200FS [13]
- JEOL 2010F [8]
- JEOL 3200FSC [8]
- FEI/PHILIPS CM200T [7]
- FEI/PHILIPS CM300FEG/ST [6]
- JEOL 2100F [6]
- JEOL 3000SFF [5]
- FEI TECNAI 12 [4]
- FEI/PHILIPS CM12 [4]
- FEI/PHILIPS EM420 [4]
- FEI TECNAI ARCTICA [3]
- FEI/PHILIPS CM200FEG/UT [3]
- JEOL CRYO ARM 300 [3]
- JEOL 1200EX [2]
- JEOL 2010UHR [2]
- JEOL 3200FS [2]
- TFS TALOS F200C [2]
- FEI TITAN [1]
- FEI/PHILIPS CM10 [1]
- FEI/PHILIPS EM400 [1]
- JEOL 1400 [1]
- JEOL 2010 [1]
- JEOL 2010HT [1]
- JEOL 2011 [1]
- JEOL 2100 [1]
- JEOL 4000 [1]
- JEOL KYOTO-3000SFF [1]
Electron Source
- FIELD EMISSION GUN [1680]
- LAB6 [79]
- TUNGSTEN HAIRPIN [18]
Film or detector model
- GATAN K2 SUMMIT 4K X 4K [529]
- KODAK SO-163 FILM [365]
- GATAN K3 BIOQUANTUM 6K X 4K [153]
- FEI FALCON III 4K X 4K [103]
- GATAN ULTRASCAN 4000 4K X 4K [92]
- TFS FALCON 4I 4K X 4K [72]
- FEI FALCON IV 4K X 4K [57]
- GATAN K3 6K X 4K [54]
- GATAN K2 4K X 4K [39]
- FEI FALCON II 4K X 4K [38]
- TVIPS TEMCAM-F415 4K X 4K [33]
- GATAN K2 QUANTUM 4K X 4K [31]
- GENERIC TVIPS 4K X 4K [26]
- GATAN MULTISCAN [25]
- GATAN ULTRASCAN 1000 2K X 2K [24]
- TVIPS TEMCAM-F224 2K X 2K [19]
- GENERIC CCD [13]
- GATAN K3 BIOCONTINUUM 6K X 4K [10]
- FEI EAGLE 4K X 4K [9]
- GENERIC GATAN 4K X 4K [8]
- TVIPS TEMCAM-F416 4K X 4K [8]
- GENERIC CCD 2K X 2K [7]
- GENERIC TVIPS [6]
- AGFA SCIENTA FILM [5]
- DIRECT ELECTRON DE-20 5K X 3K [4]
- FEI FALCON I 4K X 4K [3]
- GENERIC GATAN [3]
- GENERIC GATAN 2K X 2K [3]
- OTHER [3]
- DIRECT ELECTRON DE-12 4K X 3K [2]
- FEI EAGLE 2K X 2K [2]
- TVIPS TEMCAM-F816 8K X 8K [2]
- GATAN K2 BASE 4K X 4K [1]
External links
- PDB [597]
- UniProt [581]
- PDBe-Kb [564]
- AlphaFold DB [503]
- Gene Ontology [350]
- InterPro [350]
- Pfam [343]
- ChEBI [250]
- ChEMBL [230]
- DrugBank [224]
- EMPIAR [190]
- Complex Portal [138]
- SCOP2 [29]
- CATH [12]
Resolution: 31.2 Å
EM Method: Subtomogram averaging
Lucic V, Oroczo D
To Be Published
Resolution: 35.1 Å
EM Method: Subtomogram averaging
Lucic V, Oroczo-Borunda DH
To Be Published
Resolution: 2.69 Å
EM Method: Single-particle
Fitted PDBs: 9ouk
Q-score: 0.545
Rizvi Z, Dippon VN, Choudhry AE, Chung CW, Alkuraya AF, Xu W, Tao XB, Jurewicz AJ, Schneck JL, Chen W, Curnutt NM, Kabir F, Chan KH, Queisser MA, Musetti C, Dai H, Benowitz AB, Woo CM, Lander GC
Nature (2025) [ DOI: doi:10.1038/s41586-025-09994-w ]
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 9me5
Q-score: 0.553
Hvorecny KL, Interlandi G, Veth TS, Aprikian P, Manchenko A, Tchesnokova VL, Dickinson MS, Quispe JD, Riley NM, Klevit RE, Magala P, Sokurenko EV, Kollman JM
Nat Commun (2025) 16 pp. 10590-10590 [ Pubmed: 41298446 DOI: doi:10.1038/s41467-025-65666-3 ]
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 9ptm
Q-score: 0.496
Hvorecny KL, Interlandi G, Veth TS, Aprikian P, Manchenko A, Tchesnokova VL, Dickinson MS, Quispe JD, Riley NM, Klevit RE, Magala P, Sokurenko EV, Kollman JM
Nat Commun (2025) 16 pp. 10590-10590 [ Pubmed: 41298446 DOI: doi:10.1038/s41467-025-65666-3 ]
Resolution: 2.52 Å
EM Method: Single-particle
Rizvi Z, Dippon VN, Choudhry AE, Chung CW, Alkuraya AF, Xu W, Tao XB, Jurewicz AJ, Schneck JL, Chen W, Curnutt NM, Kabir F, Chan KH, Queisser MA, Musetti C, Dai H, Benowitz AB, Woo CM, Lander GC
Nature (2025) [ DOI: doi:10.1038/s41586-025-09994-w ]
Resolution: 2.4 Å
EM Method: Single-particle
Rizvi Z, Dippon VN, Choudhry AE, Chung CW, Alkuraya AF, Xu W, Tao XB, Jurewicz AJ, Schneck JL, Chen W, Curnutt NM, Kabir F, Chan KH, Queisser MA, Musetti C, Dai H, Benowitz AB, Woo CM, Lander GC
Nature (2025) [ DOI: doi:10.1038/s41586-025-09994-w ]
Resolution: 2.52 Å
EM Method: Single-particle
Rizvi Z, Dippon VN, Choudhry AE, Chung CW, Alkuraya AF, Xu W, Tao XB, Jurewicz AJ, Schneck JL, Chen W, Curnutt NM, Kabir F, Chan KH, Queisser MA, Musetti C, Dai H, Benowitz AB, Woo CM, Lander GC
Nature (2025) [ DOI: doi:10.1038/s41586-025-09994-w ]
Resolution: 2.71 Å
EM Method: Single-particle
Rizvi Z, Dippon VN, Choudhry AE, Chung CW, Alkuraya AF, Xu W, Tao XB, Jurewicz AJ, Schneck JL, Chen W, Curnutt NM, Kabir F, Chan KH, Queisser MA, Musetti C, Dai H, Benowitz AB, Woo CM, Lander GC
Nature (2025) [ DOI: doi:10.1038/s41586-025-09994-w ]
Resolution: 2.59 Å
EM Method: Single-particle
Rizvi Z, Dippon VN, Choudhry AE, Chung CW, Alkuraya AF, Xu W, Tao XB, Jurewicz AJ, Schneck JL, Chen W, Curnutt NM, Kabir F, Chan KH, Queisser MA, Musetti C, Dai H, Benowitz AB, Woo CM, Lander GC
Nature (2025) [ DOI: doi:10.1038/s41586-025-09994-w ]
Filter By
Current Database
- EMDB [1777]
Current status
- REL [1777]
Sample type
- Protein [871]
- Complex [776]
- Sample [717]
- Virus [302]
- Ligand [273]
- Cellular component [269]
- Cell [148]
- RNA [122]
- DNA [31]
- Other [4]
- Tissue [4]
- Em label [1]
Organism
- Homo sapiens [371]
- Escherichia coli [187]
- Mus musculus [114]
- Saccharomyces cerevisiae [110]
- Bos taurus [106]
- Mycoplasma pneumoniae [63]
- Human immunodeficiency virus 1 [57]
- Oryctolagus cuniculus [56]
- Torpedo marmorata [47]
- Synthetic construct [42]
- Sus scrofa [36]
- Chlamydomonas reinhardtii [26]
- Lama glama [26]
- Rattus norvegicus [24]
- Enterobacteria phage t4 [19]
- Gallus gallus [19]
- Borrelia burgdorferi [18]
- Methanospirillum hungatei [17]
- Drosophila melanogaster [17]
- Carboxydothermus hydrogenoformans [16]
- Human herpesvirus 8 [15]
- Saccharomyces cerevisiae [14]
- Escherichia coli [14]
- Hepatitis b virus [12]
- Adeno-associated dependoparvovirus a [11]
- Escherichia phage ms2 [11]
- Azotobacter vinelandii [10]
- Neurospora crassa [10]
- Simian immunodeficiency virus [9]
- Streptomyces griseus [8]
- Xenopus laevis [8]
- Sus scrofa [8]
- Camelus dromedarius [8]
- Salmonella phage p22 [7]
- Bacillus phage phi29 [7]
- Carnivore protoparvovirus 1 [7]
- Synechococcus elongatus [7]
- Plasmodium falciparum [7]
- Strongylocentrotus purpuratus [7]
- Equus caballus [7]
- Rotavirus a [6]
- Human immunodeficiency virus 1 [6]
- Tobacco mosaic virus [6]
- Agricanvirus ray [6]
- Plasmodium falciparum [6]
- Tetrahymena thermophila [6]
- Dengue virus [5]
- Enterovirus c [5]
- Dengue virus [5]
- Acanthamoeba polyphaga mimivirus [5]
- Pseudomonas phage 201phi2-1 [5]
- Human mastadenovirus c [5]
- Teranympha mirabilis [5]
- Thermus thermophilus [5]
- Haloarcula hispanica virus sh1 [5]
- Dictyostelium discoideum [5]
- Trichonympha agilis [5]
- (no species) [4]
- Pseudomonas virus prd1 [4]
- Pseudoalteromonas phage pm2 [4]
- Escherichia virus t7 [4]
- Mouse mammary tumor virus [4]
- Barley stripe mosaic virus [4]
- Phage gifsy-2 [4]
- Gemmatimonas phototrophica [4]
- Pseudomonas phage phikz [4]
- Thermoplasma acidophilum [4]
- Thermus thermophilus [4]
- Escherichia phage ms2 [4]
- Human herpesvirus 6b [4]
- Trichonympha sp. [4]
- Adeno-associated dependoparvovirus a [4]
- Human herpesvirus 8 [4]
- Human herpesvirus 1 [3]
- Epstein-barr virus (strain gd1) [3]
- Shigella phage sf6 [3]
- Primate erythroparvovirus 1 [3]
- Avian coronavirus [3]
- Human respiratory syncytial virus [3]
- Rift valley fever phlebovirus [3]
- Parechovirus a [3]
- Enterovirus b [3]
- Enterovirus b [3]
- Enterovirus c [3]
- Red clover necrotic mosaic virus [3]
- Zaire ebolavirus [3]
- Streptococcus pneumoniae [3]
- Leptospira interrogans [3]
- Bacterium [3]
- Lethocerus indicus [3]
- Borrelia burgdorferi [3]
- Pyrococcus furiosus [3]
- Pseudomonas virus el [3]
- Ephydatia fluviatilis [3]
- Varicellovirus suidalpha1 [3]
- Spinacia oleracea [3]
- Arabidopsis thaliana [3]
- Enterovirus a [3]
- Grammostola rosea [3]
- Escherichia coli [3]
EM Method
- Single-particle [1103]
- Subtomogram averaging [393]
- Helical reconstruction [153]
- Tomography [119]
- Electron Crystallography [9]
Resolution
- < 2Å [11]
- ≥ 2Å and < 3Å [140]
- ≥ 3Å and < 4Å [293]
- ≥ 4Å and < 5Å [123]
- ≥ 5Å and < 6Å [48]
- ≥ 6Å and < 8Å [128]
- ≥ 8Å and < 12Å [270]
- ≥ 12Å and < 16Å [141]
- ≥ 16Å and < 20Å [84]
- ≥ 20Å and < 30Å [177]
- ≥ 30Å [223]
Model molecular weight
- 0-50 kDa [19]
- 50-100 kDa [35]
- 100-250 kDa [130]
- 250-500 kDa [135]
- 500-1000 kDa [72]
- 1-2 MDa [50]
- 2-5 MDa [87]
- 5-10 MDa [30]
- > 10 MDa [35]
Release Date
- 2025 [163]
- 2024 [201]
- 2023 [105]
- 2022 [97]
- 2021 [166]
- 2020 [99]
- 2019 [79]
- 2018 [59]
- 2017 [63]
- 2016 [74]
- 2015 [99]
- 2014 [39]
- 2013 [83]
- 2012 [67]
- 2011 [62]
- 2010 [68]
- 2009 [79]
- 2008 [27]
- 2007 [41]
- 2006 [30]
- 2005 [20]
- 2004 [19]
- 2003 [30]
- 2002 [7]
Author by name
- Lyumkis D [113]
- Lander GC [99]
- Zeev-ben-mordehai T [77]
- Leung MR [73]
- Mahamid J [63]
- Xue L [63]
- Brown A [62]
- Huang W [62]
- Zeng J [62]
- Zhang R [62]
- Liu J [61]
- Rossmann MG [55]
- Butcher SJ [54]
- Rappsilber J [53]
- Cramer P [49]
- Lenz S [49]
- Tegunov D [49]
- Roelofs MC [48]
- Unwin N [47]
- Zhou ZH [45]
- Villa E [44]
- Bork P [43]
- Heck AJR [43]
- Hevler JF [42]
- Rabuck-gibbons JN [42]
- Williamson JR [42]
- Zenezini Chiozzi R [42]
- Dutcher SK [41]
- Fischer N [41]
- Rodnina MV [41]
- Aricescu AR [40]
- Malinauskas T [40]
- Medalia O [40]
- Mihaylov DB [40]
- Nicastro D [39]
- Wang X [39]
- Forster F [38]
- Zimmermann-kogadeeva M [38]
- Saibil HR [37]
- Li Z [36]
- Passos DO [35]
- Chipman PR [34]
- Grunewald K [34]
- Tan YZ [34]
- Shan Z [33]
- Taylor KA [33]
- Ward AB [33]
- Aiyer S [32]
- Faller WJ [31]
- Fedry J [31]
- Fronik S [31]
- Mechulam Y [31]
- Schmitt E [31]
- Silva J [31]
- Vanevic M [31]
- Des Georges A [31]
- Baumeister W [30]
- Chan KH [30]
- Grotjahn DA [30]
- Chen W [29]
- Clare DK [29]
- Herzik Jr Ma [29]
- Suslov S [28]
- Agbandje-mckenna M [27]
- Alkuraya AF [27]
- Benowitz AB [27]
- Choudhry AE [27]
- Chung CW [27]
- Curnutt NM [27]
- Dai H [27]
- Dippon VN [27]
- Jurewicz AJ [27]
- Kabir F [27]
- Mckenna R [27]
- Musetti C [27]
- Queisser MA [27]
- Rizvi Z [27]
- Schneck JL [27]
- Tao XB [27]
- Wendler P [27]
- Woo CM [27]
- Wu M [27]
- Xu W [27]
- Baker TS [26]
- Chowdhury S [26]
- Shi Y [26]
- Sindelar CV [25]
- Anderson JR [24]
- Bowman VD [24]
- Hu B [24]
- Hull JA [24]
- Mietzsch M [24]
- Niu Q [24]
- Noteborn WEM [24]
- Sali A [24]
- Sun C [24]
- Zhang Z [24]
- Baldwin PR [23]
- Barad BA [23]
- Benner SA [23]
Author by ORCID
- Lyumkis D [85]
- Leung MR [72]
- Mahamid J [63]
- Xue L [63]
- Lander GC [62]
- Brown A [61]
- Zeng J [61]
- Rappsilber J [53]
- Butcher SJ [52]
- Cramer P [49]
- Lenz S [49]
- Roelofs MC [48]
- Bork P [43]
- Rabuck-gibbons JN [42]
- Heck AJR [42]
- Williamson JR [42]
- Zenezini Chiozzi R [42]
- Fischer N [41]
- Mihaylov DB [40]
- Malinauskas T [39]
- Aricescu AR [39]
- Zimmermann-kogadeeva M [38]
- Forster F [37]
- Tan YZ [34]
- Zeev-ben-mordehai T [34]
- Rodnina MV [34]
- Chipman PR [33]
- Grunewald K [32]
- Faller WJ [31]
- Des Georges A [31]
- Mechulam Y [31]
- Fronik S [31]
- Aiyer S [30]
- Shan Z [30]
- Clare DK [29]
- Medalia O [29]
- Passos DO [28]
- Wendler P [27]
- Baker TS [26]
- Herzik Jr Ma [26]
- Grotjahn DA [23]
- Sun C [23]
- Chowdhury S [23]
- Hoshika S [23]
- Petrychenko V [23]
- Noel JAP [23]
- Mckenna R [23]
- Wang D [23]
- Oh J [23]
- Niu Q [23]
- Noteborn WEM [23]
- Huang W [23]
- Zhang R [23]
- Nicastro D [22]
- Guo Q [22]
- Echeverria I [22]
- Kollman JM [21]
- Bottcher B [21]
- Grigorieff N [20]
- Orlova EV [20]
- Hagen WJH [19]
- Guichard P [19]
- Ranson NA [18]
- Dai X [18]
- Boehringer D [18]
- Murphy BJ [17]
- Laurinmaki P [17]
- Pfeil-gardiner O [17]
- Hoenger A [17]
- Wu M [17]
- Griffin PR [17]
- Watanabe T [17]
- Forli S [17]
- Gonczy P [17]
- Gouaux E [17]
- Shima S [17]
- Battisti AJ [17]
- Prazak V [16]
- Ruickoldt J [16]
- Kreibich J [16]
- Duffus BR [16]
- Huiskonen JT [16]
- Le Guennec M [16]
- Dobbek H [16]
- Jeoung JH [16]
- Leimkuhler S [16]
- Briggs JA [16]
- Ge J [15]
- Stockley PG [15]
- Goehring A [15]
- Dodonova SO [15]
- Fu G [15]
- Elferich J [15]
- Lucic V [15]
- Matsui A [15]
- Bezler A [14]
- Gilbert RJ [14]
- Carragher B [14]
- Spahn CMT [14]
- Nazarov S [14]
Journal
- NATURE [180]
- PNAS [160]
- NAT STRUCT MOL BIOL [139]
- STRUCTURE [137]
- NAT COMMUN [131]
- BIORXIV [105]
- CELL [104]
- SCIENCE [93]
- J VIROL [90]
- TO BE PUBLISHED [87]
- ELIFE [78]
- J MOL BIOL [71]
- MOL CELL [71]
- EMBO J [63]
- J STRUCT BIOL [40]
- SCI ADV [30]
- J CELL BIOL [26]
- ACTA CRYSTALLOGR D STRUCT BIOL [17]
- MOL BIOL CELL [17]
- PLOS PATHOG [17]
- NAT CATAL [16]
- VIROLOGY [16]
- CELL REP [15]
- J BIOL CHEM [14]
- EMBO REP [13]
- PLOS ONE [12]
- NAT MICROBIOL [11]
- NAT CELL BIOL [10]
- FEBS LETT [9]
- MICROLIFE [9]
- NAT METHODS [8]
- DEV CELL [7]
- PLOS BIOL [7]
- INT J BIOL MACROMOL [6]
- J BACTERIOL [6]
- SCI REP [6]
- LIFE SCI ALLIANCE [5]
- BIOCHEM J [4]
- BLOOD [4]
- CELL CYCLE [4]
- IUCRJ [4]
- J CELL SCI [4]
- NUCLEIC ACIDS RES [4]
- PROTEIN SCI [4]
- BIOCHEMISTRY [3]
- COMMUN BIOL [3]
- CURR BIOL [3]
- FASEB J [3]
- FRONT MOL BIOSCI [3]
- MBIO [3]
- PHYS BIOL [3]
- PLOS GENET [3]
- J STRUCT BIOL X [2]
- METHODS [2]
- MOL MICROBIOL [2]
- TRAFFIC [2]
- ANGEW CHEM INT ED ENGL [1]
- BIOCHEM BIOPHYS RES COMMUN [1]
- BIOPHYS J [1]
- CELL HOST MICROBE [1]
- COMPUT CRYST NEWSL [1]
- CYTOSKELETON [1]
- FRONT CELL DEV BIOL [1]
- ISCIENCE [1]
- J GEN VIROL [1]
- J PHYS CHEM B [1]
- MICROSCOPY [1]
- NAT CHEM [1]
- VIRUS RES [1]
- VIRUSES [1]
Software
- RELION [527]
- CRYOSPARC [253]
- IMOD [147]
- CTFFIND [127]
- SPIDER [89]
- FREALIGN [81]
- CHIMERA [80]
- WARP [71]
- PEET [52]
- EMAN [32]
- GCTF [32]
- PYTOM [29]
- AUTO3DEM [28]
- PROTOMO [27]
- MATLAB [26]
- MRC [22]
- IMAGIC [21]
- PHENIX [20]
- DYNAMO [19]
- EMFIT [18]
- ETOMO [16]
- IMAGIC, CUSTOM, SPIDER [16]
- TOMOALIGN [15]
- CTFFIND3 [11]
- EMAN2 [11]
- GAP [11]
- IMOD, PROTOMO [11]
- IMOD, RAPTOR, PROTOMO [11]
- O [11]
- TOM [11]
- TOM TOOLBOX [11]
- UCSF CHIMERA [11]
- URO [11]
- CISTEM [10]
- IMAGIC-5, SPIDER [10]
- PHOELIX, SUPRIM [10]
- SITUS [10]
- XMIPP [9]
- EMPFT EM3DR [8]
- FREALIX [8]
- IMIRS [8]
- CTFPHASEFLIP [7]
- IMAGIC, SPIDER [7]
- IMOD, PROTOMO, I3, EMAN [7]
- IMOD, TOM, AV3 [7]
- PFT2, EM3DR2, POR, P3DR [7]
- PHOELIX [7]
- SPIDER, IHRSR [7]
- SPIDER, TOM_TOOLBOX [7]
- CRYOLO [6]
- I3, PROTOMO [6]
- IMAGIC-5 [6]
- IMOD, PRIISM/IVE [6]
- XMIPP, ML, TOMO [6]
- AMIRA [5]
- AV3 [5]
- BSOFT [5]
- BSOFT, EMAN2, RELION, SPIDER, IHRSR [5]
- COOT, SPDBV, REFMAC5 [5]
- EMPFT, POR, P3DR [5]
- IMAGIC, EMAN, FREALIGN, SPIDER, GAP [5]
- SPIDER, IMAGIC, GAP, CNS, XPLOR [5]
- SPIDER, WELLMAP [5]
- TOM, AV3 [5]
- CHIMERA, FLEX-EM [4]
- EM [4]
- EMAN, EMAN2 [4]
- EMAN, IMAGIC, SPIDER [4]
- EMBL, P3DR [4]
- EMBL-ICOS, MRC [4]
- ETOMO, IMOD [4]
- FLEX-EM [4]
- IHRSR [4]
- IMAGIC SPIDER MRC [4]
- IMOD, ETOMO, , PEET , SPIDER [4]
- IMOD, PEET [4]
- IMOD, PEET, BSOFT [4]
- PFT [4]
- PFT - EM3DR [4]
- PFT2, EM3DR2 [4]
- PROJALIGN [4]
- RELION, CTFFIND3 [4]
- SPIDER, EMAN2 [4]
- SPIDER,FREALIGN [4]
- SPIDER/WEB [4]
- SPRING [4]
- XMIPP, FREALIGN [4]
- 3DMOD [3]
- CNS [3]
- CTFFIND3, LABEL AND SPIDER [3]
- CTFFIND3, RELION1.3 [3]
- DIREX [3]
- EMAN, EMAN2, RELION [3]
- ETOMO, FROM, IMOD, SOFTWARE [3]
- FOLDHUNTER [3]
- FREALIGN, IMAGIC [3]
- IMAGIC, RELION [3]
- IMIRS, EMAN1 [3]
- MANUAL [3]
- MDFF [3]
Microscope
- FEI TITAN KRIOS [699]
- FEI TECNAI F20 [186]
- FEI TALOS ARCTICA [185]
- FEI POLARA 300 [143]
- TFS KRIOS [142]
- FEI TECNAI F30 [75]
- FEI/PHILIPS CM200FEG [70]
- FEI/PHILIPS CM300FEG/T [70]
- FEI TECNAI 20 [42]
- FEI/PHILIPS CM120T [23]
- FEI/PHILIPS CM200FEG/ST [17]
- JEOL 4000EX [17]
- TFS GLACIOS [17]
- JEOL 2200FS [13]
- JEOL 2010F [8]
- JEOL 3200FSC [8]
- FEI/PHILIPS CM200T [7]
- FEI/PHILIPS CM300FEG/ST [6]
- JEOL 2100F [6]
- JEOL 3000SFF [5]
- FEI TECNAI 12 [4]
- FEI/PHILIPS CM12 [4]
- FEI/PHILIPS EM420 [4]
- FEI TECNAI ARCTICA [3]
- FEI/PHILIPS CM200FEG/UT [3]
- JEOL CRYO ARM 300 [3]
- JEOL 1200EX [2]
- JEOL 2010UHR [2]
- JEOL 3200FS [2]
- TFS TALOS F200C [2]
- FEI TITAN [1]
- FEI/PHILIPS CM10 [1]
- FEI/PHILIPS EM400 [1]
- JEOL 1400 [1]
- JEOL 2010 [1]
- JEOL 2010HT [1]
- JEOL 2011 [1]
- JEOL 2100 [1]
- JEOL 4000 [1]
- JEOL KYOTO-3000SFF [1]
Electron Source
- FIELD EMISSION GUN [1680]
- LAB6 [79]
- TUNGSTEN HAIRPIN [18]
Film or detector model
- GATAN K2 SUMMIT 4K X 4K [529]
- KODAK SO-163 FILM [365]
- GATAN K3 BIOQUANTUM 6K X 4K [153]
- FEI FALCON III 4K X 4K [103]
- GATAN ULTRASCAN 4000 4K X 4K [92]
- TFS FALCON 4I 4K X 4K [72]
- FEI FALCON IV 4K X 4K [57]
- GATAN K3 6K X 4K [54]
- GATAN K2 4K X 4K [39]
- FEI FALCON II 4K X 4K [38]
- TVIPS TEMCAM-F415 4K X 4K [33]
- GATAN K2 QUANTUM 4K X 4K [31]
- GENERIC TVIPS 4K X 4K [26]
- GATAN MULTISCAN [25]
- GATAN ULTRASCAN 1000 2K X 2K [24]
- TVIPS TEMCAM-F224 2K X 2K [19]
- GENERIC CCD [13]
- GATAN K3 BIOCONTINUUM 6K X 4K [10]
- FEI EAGLE 4K X 4K [9]
- GENERIC GATAN 4K X 4K [8]
- TVIPS TEMCAM-F416 4K X 4K [8]
- GENERIC CCD 2K X 2K [7]
- GENERIC TVIPS [6]
- AGFA SCIENTA FILM [5]
- DIRECT ELECTRON DE-20 5K X 3K [4]
- FEI FALCON I 4K X 4K [3]
- GENERIC GATAN [3]
- GENERIC GATAN 2K X 2K [3]
- OTHER [3]
- DIRECT ELECTRON DE-12 4K X 3K [2]
- FEI EAGLE 2K X 2K [2]
- TVIPS TEMCAM-F816 8K X 8K [2]
- GATAN K2 BASE 4K X 4K [1]
External links
- PDB [597]
- UniProt [581]
- PDBe-Kb [564]
- AlphaFold DB [503]
- Gene Ontology [350]
- InterPro [350]
- Pfam [343]
- ChEBI [250]
- ChEMBL [230]
- DrugBank [224]
- EMPIAR [190]
- Complex Portal [138]
- SCOP2 [29]
- CATH [12]