How can I quote BioModels?

Several papers about BioModels and related efforts have been published. Please see below for how to cite: BioModels | Reproducibility | BioModels Parameters | Path2Models | Associated services | Others.

For a more complete list, please refer to our Google Scholar profile.


Rahuman S Malik-Sheriff, Mihai Glont, Tung V N Nguyen, Krishna Tiwari, Matthew G Roberts, Ashley Xavier, Manh T Vu, Jinghao Men, Matthieu Maire, Sarubini Kananathan, Emma L Fairbanks, Johannes P Meyer, Chinmay Arankalle, Thawfeek M Varusai, Vincent Knight-Schrijver, Lu Li, Corina Dueñas-Roca, Gaurhari Dass, Sarah M Keating, Young M Park, Nicola Buso, Nicolas Rodriguez, Michael Hucka, and Henning Hermjakob
BioModels — 15 years of sharing computational models in life science.
Nucl. Acids Res. 2020
[Nucl. Acids Res.] [ + iconBibTeX entry]
Mihai Glont, Tung V N Nguyen, Martin Graesslin, Robert Hälke, Raza Ali, Jochen Schramm, Sarala M Wimalaratne, Varun B Kothamachu, Nicolas Rodriguez, Maciej J Swat, Jurgen Eils, Roland Eils, Camille Laibe, Rahuman S Malik-Sheriff, Vijayalakshmi Chelliah, Nicolas Le Novère, and Henning Hermjakob
BioModels: expanding horizons to include more modelling approaches and formats.
Nucl. Acids Res. 2018
[Nucl. Acids Res.] [ + iconBibTeX entry]


Krishna Tiwari, Sarubini Kananathan, Matthew G Roberts, Johannes P Meyer, Mohammad Umer Sharif Shohan, Ashley Xavier, Matthieu Maire, Ahmad Zyoud, Jinghao Men, Szeyi Ng, Tung V N Nguyen, Mihai Glont, Henning Hermjakob, Rahuman S Malik‐Sheriff
Reproducibility in systems biology modelling
Molecular Systems Biology 2021
[Molecular Systems Biology] [ + iconBibTeX entry]

BioModels Parameters

Mihai Glont, Chinmay Arankalle, Krishna Tiwari, Tung V N Nguyen, Henning Hermjakob, Rahuman S Malik Sheriff
BioModels Parameters: a treasure trove of parameter values from published systems biology models
Bioinformatics 2020
[Bioinformatics] [ + iconBibTeX entry]

Other publications

Vijayalakshmi Chelliah, Nick Juty, Ishan Ajmera, Raza Ali, Marine Dumousseau, Mihai Glont, Michael Hucka, Gaël Jalowicki, Sarah Keating, Vincent Knight-Schrijver, Audald Lloret-Villas, Kedar Nath Natarajan, Jean-Baptiste Pettit, Nicolas Rodriguez, Michael Schubert, Sarala M. Wimalaratne, Yangyang Zhao, Henning Hermjakob, Nicolas Le Novère and Camille Laibe
BioModels: ten-year anniversary.
Nucl. Acids Res. 2015
[Nucl. Acids Res.] [ + iconBibTeX entry]
A Lloret‐Villas, TM Varusai, N Juty, C Laibe, N Le Novère, H Hermjakob and V Chelliah
The Impact of Mathematical Modeling in Understanding the Mechanisms Underlying Neurodegeneration: Evolving Dimensions and Future Directions.
CPT: Pharmacometrics & Systems Pharmacology 2017
[ CPT: Pharmacometrics & Systems Pharmacology] [ + iconBibTeX entry]
Nick Juty, Raza Ali, Mihai Glont, Sarah Keating, Nicolas Rodriguez, Maciej J. Swat, Sarala M. Wimalaratne, Henning Hermjakob, Nicolas Le Novère, Camille Laibe and Vijayalakshmi Chelliah
BioModels: Content, Features, Functionality and Use.
CPT: Pharmacometrics & Systems Pharmacology 2015
[CPT: Pharmacometrics & Systems Pharmacology] [ + iconBibTeX entry]
Nicolas Le Novère, Benjamin Bornstein, Alexander Broicher, Mélanie Courtot, Marco Donizelli, Harish Dharuri, Lu Li, Herbert Sauro, Maria Schilstra, Bruce Shapiro, Jacky L. Snoep and Michael Hucka
BioModels Database: A Free, Centralized Database of Curated, Published, Quantitative Kinetic Models of Biochemical and Cellular Systems.
Nucleic Acids Research 2006, 34(Database issue):D689-91
[Europe PMC] [Nucleic Acids Res] [ + iconBibTeX entry]
Vijayalakshmi Chelliah, Camille Laibe, Nicolas Le Novère
BioModels Database: A Repository of Mathematical Models of Biological Processes.
Methods in Molecular Biology 2013, 1021:189-199
[Europe PMC] [Springer] [ + iconBibTeX entry]
Chen Li, Marco Donizelli, Nicolas Rodriguez, Harish Dharuri, Lukas Endler, Vijayalakshmi Chelliah, Lu Li, Enuo He, Arnaud Henry, Melanie I. Stefan, Jacky L. Snoep, Michael Hucka, Nicolas Le Novère and Camille Laibe
BioModels Database: An enhanced, curated and annotated resource for published quantitative kinetic models.
BMC Systems Biology 2010, 4:92
[Europe PMC] [BMC Sys Bio] [ + iconBibTeX entry]


Finja Büchel, Nicolas Rodriguez, Neil Swainston, Clemens Wrzodek, Tobias Czauderna, Roland Keller, Florian Mittag, Michael Schubert, Mihai Glont, Martin Golebiewski, Martijn van Iersel, Sarah Keating, Matthias Rall, Michael Wybrow, Henning Hermjakob, Michael Hucka, Douglas B Kell, Wolfgang Müller, Pedro Mendes, Andreas Zell, Claudine Chaouiya, Julio Saez-Rodriguez, Falk Schreiber, Laibe, Camille, Andreas Dräger and Nicolas Le Novère
Path2Models: large-scale generation of computational models from biochemical pathway maps.
BMC Systems Biology 2013, 7:116
[Europe PMC] [BMC Sys Bio] [ + iconBibTeX entry]

Associated services

Sarala M Wimalaratne, Pierre Grenon, Henning Hermjakob, Nicolas Le Novère and Camille Laibe
BioModels linked dataset.
BMC Systems Biology 2014, 8(1):91
[Europe PMC] [BMC Sys Bio] [ + iconBibTeX entry]
Chen Li, Mélanie Courtot, Nicolas Le Novère and Camille Laibe Web Services, a free and integrated toolkit for computational modelling software.
Briefings in Bioinformatics 2010, 11:270-277
[Europe PMC] [Brief Bioinform] [ + iconBibTeX entry]