BioModels

•   Scaramellini1997 - Two-receptor:One-transducer (2R1T) model for analysis of interactions between agonists
  
  Submitter: Kausthubh Ramachandran | Published date: 2021-06-08
  Publication: Analysis of agonist-agonist interactions: the crucial influence of curve shape., Journal of pharmacological and toxicological methods (1997)
•   Payne2021 - genome-scale metabolic model (iPau21) of Pseudomonas aeruginosa UCBPP-PA14
  
  Submitter: Andreas Dräger | Published date: 2021-06-16
  Publication: An updated genome-scale metabolic network reconstruction of Pseudomonas aeruginosa PA14 to characterize mucin-driven shifts in bacterial metabolism, bioRxiv (2021)
•   Zhang2007 - Mechanism of DNA damage response (Model1)
  
  Submitter: Krishna Kumar Tiwari | Published date: 2021-05-26
  Publication: Exploring mechanisms of the DNA-damage response: p53 pulses and their possible relevance to apoptosis., Cell cycle (Georgetown, Tex.) (2007)
•   Bannerman2020 - Generated from the BioCyc Pathway/Genome Database Homo sapiens
  
  Submitter: Krishna Kumar Tiwari | Published date: 2021-06-17
  Publication: Structural and dynamical analysis of integrated human/SARS-CoV-2 metabolic models present novel treatment strategies against Covid-19, Nature Preprint (2020)
•   DalviGarcia2021 - Dopaminergic and Serotonergic-Kynurenine model
  
  Submitter: Krishna Kumar Tiwari | Published date: 2021-05-11
  Publication: A model of dopamine and serotonin-kynurenine metabolism in cortisolemia: Implications for depression, PLOS Computational Biology (2021)
•   Mani-Tlusty2021 - generative development model
  
  Submitter: Krishna Kumar Tiwari | Published date: 2021-05-24
  Publication: A comprehensive survey of developmental programs reveals a dearth of tree-like lineage graphs and ubiquitous regeneration, BMC Biology (2021)
•   Corbat2021 - Apoptotic Reaction Model.models
  
  Submitter: Agustin | Published date: 2021-05-26
  Publication: An Integrative Apoptotic Reaction Model for extrinsic and intrinsic stimuli, biorXiv (2021)

•   Izhikevich2004_SpikingNeurons_Class2Excitable
•   Haffez2017 - RAR interaction with synthetic analogues
•   Hettling2011_CreatineKinase
•   Haberichter2007_cellcycle
•   Novak1997 - Cell Cycle
•   Talemi2014 - Arsenic toxicity and detoxification mechanisms in yeast
•   Brännmark2013 - Insulin signalling in human adipocytes (normal condition)
•   Stortelder1997 - Thrombin Generation Amidolytic Activity
•   Legewie2006_apoptosis_WT
•   Bungay2003_Thrombin_Generation

Rahuman S Malik-Sheriff, Mihai Glont, Tung V N Nguyen, Krishna Tiwari, Matthew G Roberts, Ashley Xavier, Manh T Vu, Jinghao Men, Matthieu Maire, Sarubini Kananathan, Emma L Fairbanks, Johannes P Meyer, Chinmay Arankalle, Thawfeek M Varusai, Vincent Knight-Schrijver, Lu Li, Corina Dueñas-Roca, Gaurhari Dass, Sarah M Keating, Young M Park, Nicola Buso, Nicolas Rodriguez, Michael Hucka, and Henning Hermjakob

BioModels — 15 years of sharing computational models in life science.

Nucl. Acids Res. 2020

Mihai Glont, Tung V N Nguyen, Martin Graesslin, Robert Hälke, Raza Ali, Jochen Schramm, Sarala M Wimalaratne, Varun B Kothamachu, Nicolas Rodriguez, Maciej J Swat, Jurgen Eils, Roland Eils, Camille Laibe, Rahuman S Malik-Sheriff, Vijayalakshmi Chelliah, Nicolas Le Novère, and Henning Hermjakob

BioModels: expanding horizons to include more modelling approaches and formats.

Nucl. Acids Res. 2018

BioModels is supported by the European Molecular Biology Laboratory, the Biotechnology and Biological Sciences Research Council (Multimod, BB/N019482/1) and the Innovative Medicines Initiative (TransQST, 116030).

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