BioModels

•   iAR22_SARS-CoV-2_Calu3 - A collection of cell-type specific constraint-based metabolic models of human Calu-3 cells infected with SARS-CoV-2
  
  Submitter: Andreas Dräger | Published date: 2025-04-14
  Publication: Metabolic Modeling Elucidates Phenformin and Atpenin A5 as Broad-Spectrum Antiviral Drugs: Influenza-Infection Model, Preprints (2022)
•   Merkt2024 - SEIR based model of SARS-CoV-2 variant spread and cross-immunity in Ethiopia
  
  Submitter: Simon Merkt | Published date: 2025-04-12
  Publication: Long-term monitoring of SARS-CoV-2 seroprevalence and variants in Ethiopia provides prediction for immunity and cross-immunity., Nature communications (2024)
•   Immanuel2024 - Bacillus subtilis Levan Biosynthesis
  
  Submitter: Ragothaman Yennamalli | Published date: 2025-04-11
  Publication: Targeting the Bottlenecks in Levan Biosynthesis Pathway in Bacillus subtilis and Strain Optimization by Computational Modeling and Omics Integration, OMICS: A Journal of Integrative Biology (2024)
•   Sherekar2023 - Modeling heterogeneity in TNFR1 signaling model
  
  Submitter: Shubhank Sherekar | Published date: 2025-04-22
  Publication: Modulating the dynamics of NFκB and PI3K enhances the ensemble-level TNFR1 signaling mediated apoptotic response., NPJ systems biology and applications (2023)
•   Gall2023 - Agent-based model of the intestinal epithelium
  
  Submitter: Louis Gall | Published date: 2025-05-12
  Publication: Homeostasis, injury and recovery dynamics at multiple scales in a self-organizing mouse intestinal crypt, eLife (2024)
•   Abbiati2021_Avadomide-induced neutropenia model
  
  Submitter: Abbiati Roberto Andrea | Published date: 2025-04-07
  Publication: Quantitative Systems Pharmacology Modeling of Avadomide-Induced Neutropenia Enables Virtual Clinical Dose and Schedule Finding Studies., The AAPS journal (2021)
•   Carpenter 2024 - Mechanical control of growing and homeostatic epithelia
  
  Submitter: Logan Carpenter | Published date: 2025-04-22
  Publication: Mechanical control of cell proliferation patterns in growing epithelial monolayers., Biophysical journal (2024)

•   Novak1997 - Cell Cycle
•   Talemi2014 - Arsenic toxicity and detoxification mechanisms in yeast
•   Brännmark2013 - Insulin signalling in human adipocytes (normal condition)
•   Haffez2017 - RAR interaction with synthetic analogues
•   Stortelder1997 - Thrombin Generation Amidolytic Activity
•   Hettling2011_CreatineKinase
•   Bungay2003_Thrombin_Generation

Rahuman S Malik-Sheriff, Mihai Glont, Tung V N Nguyen, Krishna Tiwari, Matthew G Roberts, Ashley Xavier, Manh T Vu, Jinghao Men, Matthieu Maire, Sarubini Kananathan, Emma L Fairbanks, Johannes P Meyer, Chinmay Arankalle, Thawfeek M Varusai, Vincent Knight-Schrijver, Lu Li, Corina Dueñas-Roca, Gaurhari Dass, Sarah M Keating, Young M Park, Nicola Buso, Nicolas Rodriguez, Michael Hucka, and Henning Hermjakob

BioModels — 15 years of sharing computational models in life science.

Nucl. Acids Res. 2020

Mihai Glont, Tung V N Nguyen, Martin Graesslin, Robert Hälke, Raza Ali, Jochen Schramm, Sarala M Wimalaratne, Varun B Kothamachu, Nicolas Rodriguez, Maciej J Swat, Jurgen Eils, Roland Eils, Camille Laibe, Rahuman S Malik-Sheriff, Vijayalakshmi Chelliah, Nicolas Le Novère, and Henning Hermjakob

BioModels: expanding horizons to include more modelling approaches and formats.

Nucl. Acids Res. 2018

BioModels is supported by the European Molecular Biology Laboratory, the Biotechnology and Biological Sciences Research Council (Multimod, BB/N019482/1) and the Innovative Medicines Initiative (TransQST, 116030).

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