December, 2021
Zake2021 - PBPK model of metformin in mice and humans
Model(s) associated with this Model of the Month: BIOMD0000001027 BIOMD0000001039 BIOMD0000001029 BIOMD0000001028
Last updated by: Krishna Kumar Tiwari
BioModels is a repository of mathematical models of biological and biomedical systems. It hosts a vast selection of existing literature-based physiologically and pharmaceutically relevant mechanistic models in standard formats. Our mission is to provide the systems modelling community with reproducible, high-quality, freely-accessible models published in the scientific literature. More information about using BioModels such as model submission, update, publication can be found in the FAQ.
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1,045 models
1,339 models
833 models
1,132 classes
540,905 records
Recently published
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Payne2021 - Pseudomonas aeruginosa UCBPP-PA14 metabolic model
Submitter: Mohammad Mazharul Islam | Published date: 2022-05-09Publication: An updated genome-scale metabolic network reconstruction of Pseudomonas aeruginosa PA14 to characterize mucin-driven shifts in bacterial metabolism., NPJ systems biology and applications (2021) -
Cunha2022 - Leaf GSM model of Quercus suber
Submitter: Emanuel Cunha | Published date: 2022-05-06Publication: The first multi-tissue diel genome-scale metabolic model of a woody plant highlights suberin biosynthesis pathways in Quercus suber, BioRxiv, pre-print (2021) -
Blasche2021 - Metabolic cooperation and spatiotemporal niche partitioning in a kefir microbial community
Submitter: Tung Nguyen | Published date: 2022-05-09Publication: Metabolic cooperation and spatiotemporal niche partitioning in a kefir microbial community., Nature microbiology (2021) -
Kareva2010 - Myeloid cells in tumour-immune interactions.
Submitter: Mohammad Umer Sharif Shohan | Published date: 2022-05-10Publication: Myeloid cells in tumour-immune interactions., Journal of biological dynamics (2010) -
Cunha2022 - Inner Bark Model for Quercus suber
Submitter: Emanuel Cunha | Published date: 2022-05-06Publication: The first multi-tissue diel genome-scale metabolic model of a woody plant highlights suberin biosynthesis pathways in Quercus suber, BioRxiv, pre-print (2021) -
Blasche2021 - Kefir interactions, Rothia kefirresidentii KRP
Submitter: Francisco Zorrilla | Published date: 2022-05-09Publication: Metabolic cooperation and spatiotemporal niche partitioning in a kefir microbial community., Nature microbiology (2021) -
Grigolon2018 - Responses to auxin signals
Submitter: Tung Nguyen | Published date: 2022-05-10Publication: Responses to auxin signals: an operating principle for dynamical sensitivity yet high resilience., Royal Society open science (2018)
Recently accessed
- Novak1997 - Cell Cycle
- Talemi2014 - Arsenic toxicity and detoxification mechanisms in yeast
- Brännmark2013 - Insulin signalling in human adipocytes (normal condition)
- Haffez2017 - RAR interaction with synthetic analogues
- Stortelder1997 - Thrombin Generation Amidolytic Activity
- Hettling2011_CreatineKinase
- Bungay2003_Thrombin_Generation
News
- 10/03/2022: Freely create a reviewer account for your models New
- 27/02/2021: Reproducibility in Systems Biology Modelling manuscript published
- 23/07/2020: Retirement party for the classic BioModels website
- 19/06/2020: New updates for Release 5.1.9
- 10/06/2020: New updates for Release 5.1.8
- 05/06/2020: BioModels Parameters Manuscript accepted
- 17/01/2020: Planned maintenance
- 12/06/2018: Planned upgrades to BioModels
- 21/08/2017: Patient-derived genome-scale metabolic models
- 26/06/2017: 31st release of BioModels
How to cite BioModels
- Rahuman S Malik-Sheriff, Mihai Glont, Tung V N Nguyen, Krishna Tiwari, Matthew G Roberts, Ashley Xavier, Manh T Vu, Jinghao Men, Matthieu Maire, Sarubini Kananathan, Emma L Fairbanks, Johannes P Meyer, Chinmay Arankalle, Thawfeek M Varusai, Vincent Knight-Schrijver, Lu Li, Corina Dueñas-Roca, Gaurhari Dass, Sarah M Keating, Young M Park, Nicola Buso, Nicolas Rodriguez, Michael Hucka, and Henning Hermjakob
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Nucl. Acids Res. 2020
- Mihai Glont, Tung V N Nguyen, Martin Graesslin, Robert Hälke, Raza Ali, Jochen Schramm, Sarala M Wimalaratne, Varun B Kothamachu, Nicolas Rodriguez, Maciej J Swat, Jurgen Eils, Roland Eils, Camille Laibe, Rahuman S Malik-Sheriff, Vijayalakshmi Chelliah, Nicolas Le Novère, and Henning Hermjakob
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Nucl. Acids Res. 2018
Documentation
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BioModels provides online courses, please consult more information.
Acknowledgements
- BioModels is supported by the European Molecular Biology Laboratory, the Biotechnology and Biological Sciences Research Council (Multimod, BB/N019482/1) and the Innovative Medicines Initiative (TransQST, 116030).
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