March, 2021
Ito2019 - Gefitinib resistance of lung adenocarcinoma caused by MET amplification
Model(s) associated with this Model of the Month: BIOMD0000000827
Last updated by: Krishna Kumar Tiwari
BioModels is a repository of mathematical models of biological and biomedical systems. It hosts a vast selection of existing literature-based physiologically and pharmaceutically relevant mechanistic models in standard formats. Our mission is to provide the systems modelling community with reproducible, high-quality, freely-accessible models published in the scientific literature. More information about using BioModels such as model submission, update, publication can be found in the FAQ.
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1,002 models
1,265 models
833 models
1,132 classes
228,842 records
Recently published
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Dudziuk2019 - Biologically sound formal model of Hsp70 heat induction
Submitter: Krishna Kumar Tiwari | Published date: 2021-04-22Publication: Biologically sound formal model of Hsp70 heat induction., Journal of theoretical biology (2019) -
Renz2020 - GEM of Human alveolar macrophage with SARS-CoV-2
Submitter: Rahuman Sheriff | Published date: 2021-04-30Publication: FBA reveals guanylate kinase as a potential target for antiviral therapies against SARS-CoV-2, Bioinformatics (2020) -
Ciliberto2005 - Steady states and oscillations in the p53/Mdm2 network
Submitter: Krishna Kumar Tiwari | Published date: 2021-04-14Publication: Steady states and oscillations in the p53/Mdm2 network., Cell cycle (Georgetown, Tex.) (2005) -
Renz2021 - Collection of 33 SBML L3V1 (FBC Version 2) models of Staphylococcus aureus by the Path2Models project 2013
Submitter: Kausthubh Ramachandran | Published date: 2021-04-13Publication: Curating and Comparing 114 Strain-Specific Genome-Scale Metabolic Models of Staphylococcus aureus, Preprints (2021) -
Renz2021 - Collection of 13 SBML L3V1 constraint-based models (FBC Version 2) of Staphylococcus aureus
Submitter: Kausthubh Ramachandran | Published date: 2021-04-13Publication: Curating and Comparing 114 Strain-Specific Genome-Scale Metabolic Models of Staphylococcus aureus, Preprints (2021) -
DalviGarcia2021 - Dopaminergic and Serotonergic-Kynurenine model
Submitter: Krishna Kumar Tiwari | Published date: 2021-05-11Publication: A model of dopamine and serotonin-kynurenine metabolism in cortisolemia: Implications for depression, PLOS Computational Biology (2021) -
Renz2021 - genome-scale metabolic model (iDPM21RW) of Dolosigranulum pigrum 83VPs KB5
Submitter: Kausthubh Ramachandran | Published date: 2021-04-13Publication: First Genome-Scale Metabolic Model of Dolosigranulum pigrum Confirms Multiple Auxotrophies, Metabolites (2021)
Recently accessed
- Izhikevich2004_SpikingNeurons_Class2Excitable
- Haffez2017 - RAR interaction with synthetic analogues
- Hettling2011_CreatineKinase
- Haberichter2007_cellcycle
- Novak1997 - Cell Cycle
- Talemi2014 - Arsenic toxicity and detoxification mechanisms in yeast
- Brännmark2013 - Insulin signalling in human adipocytes (normal condition)
- Stortelder1997 - Thrombin Generation Amidolytic Activity
- Legewie2006_apoptosis_WT
- Bungay2003_Thrombin_Generation
News
- 27/02/2021: Reproducibility in Systems Biology Modelling manuscript published
- 23/07/2020: Retirement party for the classic BioModels website
- 19/06/2020: New updates for Release 5.1.9
- 10/06/2020: New updates for Release 5.1.8
- 05/06/2020: BioModels Parameters Manuscript accepted
- 17/01/2020: Planned maintenance
- 12/06/2018: Planned upgrades to BioModels
- 21/08/2017: Patient-derived genome-scale metabolic models
- 26/06/2017: 31st release of BioModels
- 16/01/2017: Metabolic networks and logical models have been published
How to cite BioModels
- Rahuman S Malik-Sheriff, Mihai Glont, Tung V N Nguyen, Krishna Tiwari, Matthew G Roberts, Ashley Xavier, Manh T Vu, Jinghao Men, Matthieu Maire, Sarubini Kananathan, Emma L Fairbanks, Johannes P Meyer, Chinmay Arankalle, Thawfeek M Varusai, Vincent Knight-Schrijver, Lu Li, Corina Dueñas-Roca, Gaurhari Dass, Sarah M Keating, Young M Park, Nicola Buso, Nicolas Rodriguez, Michael Hucka, and Henning Hermjakob
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Nucl. Acids Res. 2020
- Mihai Glont, Tung V N Nguyen, Martin Graesslin, Robert Hälke, Raza Ali, Jochen Schramm, Sarala M Wimalaratne, Varun B Kothamachu, Nicolas Rodriguez, Maciej J Swat, Jurgen Eils, Roland Eils, Camille Laibe, Rahuman S Malik-Sheriff, Vijayalakshmi Chelliah, Nicolas Le Novère, and Henning Hermjakob
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Nucl. Acids Res. 2018
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BioModels provides online courses, please consult more information.
Acknowledgements
- BioModels is supported by the European Molecular Biology Laboratory, the Biotechnology and Biological Sciences Research Council (Multimod, BB/N019482/1) and the Innovative Medicines Initiative (TransQST, 116030).
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