August, 2021
Creemers2021 - Tumor-immune dynamics and implications on immunotherapy responses
Model(s) associated with this Model of the Month: BIOMD0000001022
Last updated by: Emilia Chen
BioModels is a repository of mathematical models of biological and biomedical systems. It hosts a vast selection of existing literature-based physiologically and pharmaceutically relevant mechanistic models in standard formats. Our mission is to provide the systems modelling community with reproducible, high-quality, freely-accessible models published in the scientific literature. More information about using BioModels such as model submission, update, publication can be found in the FAQ.
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1,039 models
1,282 models
833 models
1,132 classes
228,842 records
Recently published
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Lim2014 - HTLV-I infection A dynamic struggle between viral persistence and host immunity
Submitter: Rahuman Sheriff | Published date: 2021-10-08Publication: HTLV-I infection: a dynamic struggle between viral persistence and host immunity., Journal of theoretical biology (2014) -
Mulberry2020 - Two-layered, self-organizing multicellular structure where all cells are of the same genotype
Submitter: Nicola Mulberry | Published date: 2021-10-14Publication: Self-organized multicellular structures from simple cell signaling: a computational model, Physical Biology (2020) -
Mulberry2020 - Three-layered, self-organizing multicellular structure where all cells randomly belong to one of the two genotypes
Submitter: Nicola Mulberry | Published date: 2021-10-14Publication: Self-organized multicellular structures from simple cell signaling: a computational model, Physical Biology (2020) -
Mulberry2020 - Two-layered, self-organizing multicellular structure where all cells are one of the two genotypes
Submitter: Nicola Mulberry | Published date: 2021-10-14Publication: Self-organized multicellular structures from simple cell signaling: a computational model, Physical Biology (2020) -
Khodaee2020 - Reconstruction of Mouse Genome-Scale Metabolic Model iMM1865
Submitter: Krishna Kumar Tiwari | Published date: 2021-10-06Publication: iMM1865: A New Reconstruction of Mouse Genome-Scale Metabolic Model., Scientific reports (2020) -
Rodrigues2019 - A mathematical model for chemoimmunotherapy of chronic lymphocytic leukemia
Submitter: Rahuman Sheriff | Published date: 2021-10-08Publication: A mathematical model for chemoimmunotherapy of chronic lymphocytic leukemia, Applied Mathematics and Computation (2019) -
GonzalezMiranda2013 - The effect of circadian oscillations on biochemical cell signaling by NF-κB
Submitter: Rahuman Sheriff | Published date: 2021-10-08Publication: On the effect of circadian oscillations on biochemical cell signaling by NF-κB., Journal of theoretical biology (2013)
Recently accessed
- Novak1997 - Cell Cycle
- Talemi2014 - Arsenic toxicity and detoxification mechanisms in yeast
- Brännmark2013 - Insulin signalling in human adipocytes (normal condition)
- Haffez2017 - RAR interaction with synthetic analogues
- Stortelder1997 - Thrombin Generation Amidolytic Activity
- Hettling2011_CreatineKinase
- Bungay2003_Thrombin_Generation
News
- 27/02/2021: Reproducibility in Systems Biology Modelling manuscript published
- 23/07/2020: Retirement party for the classic BioModels website
- 19/06/2020: New updates for Release 5.1.9
- 10/06/2020: New updates for Release 5.1.8
- 05/06/2020: BioModels Parameters Manuscript accepted
- 17/01/2020: Planned maintenance
- 12/06/2018: Planned upgrades to BioModels
- 21/08/2017: Patient-derived genome-scale metabolic models
- 26/06/2017: 31st release of BioModels
- 16/01/2017: Metabolic networks and logical models have been published
How to cite BioModels
- Rahuman S Malik-Sheriff, Mihai Glont, Tung V N Nguyen, Krishna Tiwari, Matthew G Roberts, Ashley Xavier, Manh T Vu, Jinghao Men, Matthieu Maire, Sarubini Kananathan, Emma L Fairbanks, Johannes P Meyer, Chinmay Arankalle, Thawfeek M Varusai, Vincent Knight-Schrijver, Lu Li, Corina Dueñas-Roca, Gaurhari Dass, Sarah M Keating, Young M Park, Nicola Buso, Nicolas Rodriguez, Michael Hucka, and Henning Hermjakob
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Nucl. Acids Res. 2020
- Mihai Glont, Tung V N Nguyen, Martin Graesslin, Robert Hälke, Raza Ali, Jochen Schramm, Sarala M Wimalaratne, Varun B Kothamachu, Nicolas Rodriguez, Maciej J Swat, Jurgen Eils, Roland Eils, Camille Laibe, Rahuman S Malik-Sheriff, Vijayalakshmi Chelliah, Nicolas Le Novère, and Henning Hermjakob
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Nucl. Acids Res. 2018
Documentation
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BioModels provides online courses, please consult more information.
Acknowledgements
- BioModels is supported by the European Molecular Biology Laboratory, the Biotechnology and Biological Sciences Research Council (Multimod, BB/N019482/1) and the Innovative Medicines Initiative (TransQST, 116030).
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