BioModels

•   Suyama2022 - Bordetella pertussis iMAT models
  
  Submitter: Ruiting Lan | Published date: 2025-10-24
  Publication: Integrating proteomic data with metabolic modeling provides insight into key pathways of Bordetella pertussis biofilms., Frontiers in microbiology (2023)
•   Gaspari2019 - iEG158_mpn genome-scale metabolic model of Mycoplasma pneumoniae strain M129
  
  Submitter: Erika Gaspari | Published date: 2025-10-24
  Publication: Model-driven design allows growth of Mycoplasma pneumoniae on serum-free media, NPJ systems biology and applications (2020)
•   Zerrouk2024 - Rheumatoid arthritis multi-cellular model
  
  Submitter: naouel zerrouk | Published date: 2025-10-25
  Publication: Building a modular and multi-cellular virtual twin of the synovial joint in Rheumatoid Arthritis., NPJ digital medicine (2024)
•   Elias2025 - Physiologically based pharmacokinetics (PBPK) model glimepiride
  
  Submitter: Matthias König | Published date: 2025-10-15
  Publication: A Digital Twin of Glimepiride for Personalized and Stratified Diabetes Treatment., Front. Pharmacol. (2025)
•   SheikIsmail_Amino Acid Insertions in the Hinge Region of HIV Protease Affect Enzyme Kinetics, Conformational Stability and Dynamics
  
  Submitter: Zaahida Sheik Ismail | Published date: 2025-10-24
  Publication: HIV Protease Hinge Region Insertions at Codon 38 Affect Enzyme Kinetics, Conformational Stability and Dynamics., The protein journal (2023)
•   Lopes2025 - NFkB model in Breast Cancer
  
  Submitter: FRANCISCO JP LOPES | Published date: 2025-10-25
  Publication: NF-κB Epigenetic Attractor Landscape Drives Breast Cancer Heterogeneity, bioRxiv preprint server (Unpublished)
•   Strain engineering and metabolic flux analysis of a probiotic yeast Saccharomyces cerevisiae for metabolizing L-fucose, a mammalian mucin component
  
  Submitter: Jungyeon Kim | Published date: 2025-10-24
  Publication: Strain engineering and metabolic flux analysis of a probiotic yeast Saccharomyces boulardii for metabolizing L-fucose, a mammalian mucin component., Microbial cell factories (2022)

•   Novak1997 - Cell Cycle
•   Talemi2014 - Arsenic toxicity and detoxification mechanisms in yeast
•   Brännmark2013 - Insulin signalling in human adipocytes (normal condition)
•   Haffez2017 - RAR interaction with synthetic analogues
•   Stortelder1997 - Thrombin Generation Amidolytic Activity
•   Hettling2011_CreatineKinase
•   Bungay2003_Thrombin_Generation

Rahuman S Malik-Sheriff, Mihai Glont, Tung V N Nguyen, Krishna Tiwari, Matthew G Roberts, Ashley Xavier, Manh T Vu, Jinghao Men, Matthieu Maire, Sarubini Kananathan, Emma L Fairbanks, Johannes P Meyer, Chinmay Arankalle, Thawfeek M Varusai, Vincent Knight-Schrijver, Lu Li, Corina Dueñas-Roca, Gaurhari Dass, Sarah M Keating, Young M Park, Nicola Buso, Nicolas Rodriguez, Michael Hucka, and Henning Hermjakob

BioModels — 15 years of sharing computational models in life science.

Nucl. Acids Res. 2020

Mihai Glont, Tung V N Nguyen, Martin Graesslin, Robert Hälke, Raza Ali, Jochen Schramm, Sarala M Wimalaratne, Varun B Kothamachu, Nicolas Rodriguez, Maciej J Swat, Jurgen Eils, Roland Eils, Camille Laibe, Rahuman S Malik-Sheriff, Vijayalakshmi Chelliah, Nicolas Le Novère, and Henning Hermjakob

BioModels: expanding horizons to include more modelling approaches and formats.

Nucl. Acids Res. 2018

BioModels is supported by the European Molecular Biology Laboratory, the Biotechnology and Biological Sciences Research Council (Multimod, BB/N019482/1) and the Innovative Medicines Initiative (TransQST, 116030).

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