BioModels

•   iWS902
  
  Submitter: William Scott | Published date: 2022-08-12
  Publication: Curation and Analysis of a Saccharomyces cerevisiae Genome-Scale Metabolic Model for Predicting Production of Sensory Impact Molecules under Enological Conditions, Processes (2020)
•   Levering2016 - Phaeodactylum tricornutum metabolic model
  
  Submitter: Rodrigo Santibanez | Published date: 2022-08-12
  Publication: Predicting proteome allocation, overflow metabolism, and metal requirements in a model acetogen., PLoS computational biology (2019)
•   Kim2011_VvuMBEL943_2022
  
  Submitter: Mikal Daou | Published date: 2022-08-12
  Publication: Integrative genome-scale metabolic analysis of Vibrio vulnificus for drug targeting and discovery., Molecular Systems Biology (2011)
•   Kim2021 - Development of a Genome-Scale Metabolic Model and Phenome Analysis of the Probiotic Escherichia coli Strain Nissle 1917
  
  Submitter: Mikal Daou | Published date: 2022-08-12
  Publication: Development of a Genome-Scale Metabolic Model and Phenome Analysis of the Probiotic Escherichia coli Strain Nissle 1917., International journal of molecular sciences (2021)
•   Monkeypox Knowledge Graph: A comprehensive representation embedding chemical entities and associated biology of Monkeypox
  
  Submitter: Reagon Karki | Published date: 2022-08-05
  Publication: Monkeypox Knowledge Graph: A comprehensive representation embedding chemical entities and associated biology of Monkeypox, Biorxiv (2022)
•   Lu2019 - Genome scale metabolic model for Saccharomyces cerevisiae - yeastGEM8.5.0
  
  Submitter: Mikal Daou | Published date: 2022-08-12
  Publication: A consensus S. cerevisiae metabolic model Yeast8 and its ecosystem for comprehensively probing cellular metabolism., Nature communications (2019)
•   Canto-Encalada2022-FBA of simultaneous degradation of ammonia and pollutants
  
  Submitter: Mikal Daou | Published date: 2022-08-12
  Publication: Flux balance analysis of the ammonia-oxidizing bacterium Nitrosomonas europaea ATCC19718 unravels specific metabolic activities while degrading toxic compounds., PLoS computational biology (2022)

•   Novak1997 - Cell Cycle
•   Brännmark2013 - Insulin signalling in human adipocytes (normal condition)
•   Talemi2014 - Arsenic toxicity and detoxification mechanisms in yeast
•   Haffez2017 - RAR interaction with synthetic analogues
•   Stortelder1997 - Thrombin Generation Amidolytic Activity
•   Bungay2003_Thrombin_Generation
•   Hettling2011_CreatineKinase

Rahuman S Malik-Sheriff, Mihai Glont, Tung V N Nguyen, Krishna Tiwari, Matthew G Roberts, Ashley Xavier, Manh T Vu, Jinghao Men, Matthieu Maire, Sarubini Kananathan, Emma L Fairbanks, Johannes P Meyer, Chinmay Arankalle, Thawfeek M Varusai, Vincent Knight-Schrijver, Lu Li, Corina Dueñas-Roca, Gaurhari Dass, Sarah M Keating, Young M Park, Nicola Buso, Nicolas Rodriguez, Michael Hucka, and Henning Hermjakob

BioModels — 15 years of sharing computational models in life science.

Nucl. Acids Res. 2020

Mihai Glont, Tung V N Nguyen, Martin Graesslin, Robert Hälke, Raza Ali, Jochen Schramm, Sarala M Wimalaratne, Varun B Kothamachu, Nicolas Rodriguez, Maciej J Swat, Jurgen Eils, Roland Eils, Camille Laibe, Rahuman S Malik-Sheriff, Vijayalakshmi Chelliah, Nicolas Le Novère, and Henning Hermjakob

BioModels: expanding horizons to include more modelling approaches and formats.

Nucl. Acids Res. 2018

BioModels is supported by the European Molecular Biology Laboratory, the Biotechnology and Biological Sciences Research Council (Multimod, BB/N019482/1) and the Innovative Medicines Initiative (TransQST, 116030).

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