BioModels

•   Mathematical Modeling of Ligand Competition at the Cell–Extracellular Matrix Interface
  
  Submitter: Zeynep Karagöz | Published date: 2022-12-01
  Publication: Win, Lose, or Tie: Mathematical Modeling of Ligand Competition at the Cell-Extracellular Matrix Interface., Frontiers in bioengineering and biotechnology (2021)
•   Feist2014 - Geobacter metallireducens GS-15 metabolism
  
  Submitter: Rodrigo Santibanez | Published date: 2022-11-18
  Publication: Constraint-based modeling of carbon fixation and the energetics of electron transfer in Geobacter metallireducens., PLoS computational biology (2014)
•   Potassium balance in dairy cows, model update 2021
  
  Submitter: Julia Plöntzke | Published date: 2022-11-21
  Publication: Model-based exploration of hypokalemia in dairy cows., Scientific reports (2022)
•   Baker(2022) - Immunometabolic Model
  
  Submitter: Ryan Baker | Published date: 2022-12-02
  Publication: Computational modeling of complex bioenergetic mechanisms that modulate CD4+ T cell effector and regulatory functions., NPJ systems biology and applications (2022)
•   Amstein2022 - TNFR1 Signal Transduction, Petri Net
  
  Submitter: Ann-Kathrin Otto | Published date: 2022-11-01
  Publication: Mathematical modeling of the molecular switch of TNFR1-mediated signaling pathways applying Petri net formalism and in silico knockout analysis., PLoS computational biology (2022)
•   PraneshPadmanabhan2022 - SARS-CoV-2 virus dynamics model (human)
  
  Submitter: Rajat Desikan | Published date: 2022-11-17
  Publication: Modeling how antibody responses may determine the efficacy of COVID-19 vaccines, Nature Computational Science (2022)
•   Melhem 2017 - Neutropenia Model
  
  Submitter: Shiny MARTIS B | Published date: 2022-11-04
  Publication: Pharmacokinetic-pharmacodynamic modelling of neutrophil response to G-CSF in healthy subjects and patients with chemotherapy-induced neutropenia., British journal of clinical pharmacology (2018)

•   Novak1997 - Cell Cycle
•   Brännmark2013 - Insulin signalling in human adipocytes (normal condition)
•   Talemi2014 - Arsenic toxicity and detoxification mechanisms in yeast
•   Haffez2017 - RAR interaction with synthetic analogues
•   Stortelder1997 - Thrombin Generation Amidolytic Activity
•   Bungay2003_Thrombin_Generation
•   Hettling2011_CreatineKinase

Rahuman S Malik-Sheriff, Mihai Glont, Tung V N Nguyen, Krishna Tiwari, Matthew G Roberts, Ashley Xavier, Manh T Vu, Jinghao Men, Matthieu Maire, Sarubini Kananathan, Emma L Fairbanks, Johannes P Meyer, Chinmay Arankalle, Thawfeek M Varusai, Vincent Knight-Schrijver, Lu Li, Corina Dueñas-Roca, Gaurhari Dass, Sarah M Keating, Young M Park, Nicola Buso, Nicolas Rodriguez, Michael Hucka, and Henning Hermjakob

BioModels — 15 years of sharing computational models in life science.

Nucl. Acids Res. 2020

Mihai Glont, Tung V N Nguyen, Martin Graesslin, Robert Hälke, Raza Ali, Jochen Schramm, Sarala M Wimalaratne, Varun B Kothamachu, Nicolas Rodriguez, Maciej J Swat, Jurgen Eils, Roland Eils, Camille Laibe, Rahuman S Malik-Sheriff, Vijayalakshmi Chelliah, Nicolas Le Novère, and Henning Hermjakob

BioModels: expanding horizons to include more modelling approaches and formats.

Nucl. Acids Res. 2018

BioModels is supported by the European Molecular Biology Laboratory, the Biotechnology and Biological Sciences Research Council (Multimod, BB/N019482/1) and the Innovative Medicines Initiative (TransQST, 116030).

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