BioModels

•   Konstantinidis2021 - Persistence of mutants in a mutualistic microbial co-culture
  
  Submitter: Eva Geissen | Published date: 2022-08-01
  Publication: Adaptive laboratory evolution of microbial co-cultures for improved metabolite secretion., Molecular systems biology (2021)
•   Sharma2022 - Temperature-dependent NAD biosynthesis model
  
  Submitter: Suraj Sharma | Published date: 2022-07-19
  Publication: Early Evolutionary Selection of NAD Biosynthesis Pathway in Bacteria, Metabolites (2022)
•   Trares2022 - Canonical NF-kB pathway, Petri net
  
  Submitter: Ann-Kathrin Otto | Published date: 2022-07-21
  Publication: The canonical and non-canonical NF-κB pathways and their crosstalk: A comparative study based on Petri nets., Bio Systems (2022)
•   Monkeypox Knowledge Graph: A comprehensive representation embedding chemical entities and associated biology of Monkeypox
  
  Submitter: Reagon Karki | Published date: 2022-08-05
  Publication: Monkeypox Knowledge Graph: A comprehensive representation embedding chemical entities and associated biology of Monkeypox, Biorxiv (2022)
•   Trares2022 - Non-canonical NF-kB pathway, Petri net
  
  Submitter: Ann-Kathrin Otto | Published date: 2022-07-22
  Publication: The canonical and non-canonical NF-κB pathways and their crosstalk: A comparative study based on Petri nets., Bio Systems (2022)
•   Trares2022 - Crosstalk between the canonical and non-canonical NF-kB pathways, Petri net
  
  Submitter: Ann-Kathrin Otto | Published date: 2022-07-22
  Publication: The canonical and non-canonical NF-κB pathways and their crosstalk: A comparative study based on Petri nets., Bio Systems (2022)
•   WijayaTrairatphisan2021 - Logic-ODE model of stress signaling in DILI
  
  Submitter: Panuwat Trairatphisan | Published date: 2022-08-02
  Publication: Integration of temporal single cell cellular stress response activity with logic-ODE modeling reveals activation of ATF4-CHOP axis as a critical predictor of drug-induced liver injury., Biochemical pharmacology (2021)

•   Novak1997 - Cell Cycle
•   Brännmark2013 - Insulin signalling in human adipocytes (normal condition)
•   Talemi2014 - Arsenic toxicity and detoxification mechanisms in yeast
•   Haffez2017 - RAR interaction with synthetic analogues
•   Stortelder1997 - Thrombin Generation Amidolytic Activity
•   Bungay2003_Thrombin_Generation
•   Hettling2011_CreatineKinase

Rahuman S Malik-Sheriff, Mihai Glont, Tung V N Nguyen, Krishna Tiwari, Matthew G Roberts, Ashley Xavier, Manh T Vu, Jinghao Men, Matthieu Maire, Sarubini Kananathan, Emma L Fairbanks, Johannes P Meyer, Chinmay Arankalle, Thawfeek M Varusai, Vincent Knight-Schrijver, Lu Li, Corina Dueñas-Roca, Gaurhari Dass, Sarah M Keating, Young M Park, Nicola Buso, Nicolas Rodriguez, Michael Hucka, and Henning Hermjakob

BioModels — 15 years of sharing computational models in life science.

Nucl. Acids Res. 2020

Mihai Glont, Tung V N Nguyen, Martin Graesslin, Robert Hälke, Raza Ali, Jochen Schramm, Sarala M Wimalaratne, Varun B Kothamachu, Nicolas Rodriguez, Maciej J Swat, Jurgen Eils, Roland Eils, Camille Laibe, Rahuman S Malik-Sheriff, Vijayalakshmi Chelliah, Nicolas Le Novère, and Henning Hermjakob

BioModels: expanding horizons to include more modelling approaches and formats.

Nucl. Acids Res. 2018

BioModels is supported by the European Molecular Biology Laboratory, the Biotechnology and Biological Sciences Research Council (Multimod, BB/N019482/1) and the Innovative Medicines Initiative (TransQST, 116030).

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