BioModels

•   Payne2021 - Pseudomonas aeruginosa UCBPP-PA14 metabolic model
  
  Submitter: Mohammad Mazharul Islam | Published date: 2022-05-09
  Publication: An updated genome-scale metabolic network reconstruction of Pseudomonas aeruginosa PA14 to characterize mucin-driven shifts in bacterial metabolism., NPJ systems biology and applications (2021)
•   Jenior2021 - Clostridium difficile 630 model
  
  Submitter: Mohammad Mazharul Islam | Published date: 2022-05-16
  Publication: Novel Drivers of Virulence in Clostridioides difficile Identified via Context-Specific Metabolic Network Analysis., mSystems (2021)
•   Ryu2017 - Generic human genome-scale metabolic model (Recon 2M.2)
  
  Submitter: Sang Mi Lee | Published date: 2022-05-16
  Publication: Framework and resource for more than 11,000 gene-transcript-protein-reaction associations in human metabolism., Proceedings of the National Academy of Sciences of the United States of America (2017)
•   Blasche2021 - Metabolic cooperation and spatiotemporal niche partitioning in a kefir microbial community
  
  Submitter: Tung Nguyen | Published date: 2022-05-09
  Publication: Metabolic cooperation and spatiotemporal niche partitioning in a kefir microbial community., Nature microbiology (2021)
•   Kareva2010 - Myeloid cells in tumour-immune interactions.
  
  Submitter: Mohammad Umer Sharif Shohan | Published date: 2022-05-10
  Publication: Myeloid cells in tumour-immune interactions., Journal of biological dynamics (2010)
•   Blasche2021 - Kefir interactions, Rothia kefirresidentii KRP
  
  Submitter: Francisco Zorrilla | Published date: 2022-05-09
  Publication: Metabolic cooperation and spatiotemporal niche partitioning in a kefir microbial community., Nature microbiology (2021)
•   Grigolon2018 - Responses to auxin signals
  
  Submitter: Tung Nguyen | Published date: 2022-05-10
  Publication: Responses to auxin signals: an operating principle for dynamical sensitivity yet high resilience., Royal Society open science (2018)

•   Novak1997 - Cell Cycle
•   Talemi2014 - Arsenic toxicity and detoxification mechanisms in yeast
•   Brännmark2013 - Insulin signalling in human adipocytes (normal condition)
•   Haffez2017 - RAR interaction with synthetic analogues
•   Stortelder1997 - Thrombin Generation Amidolytic Activity
•   Hettling2011_CreatineKinase
•   Bungay2003_Thrombin_Generation

Rahuman S Malik-Sheriff, Mihai Glont, Tung V N Nguyen, Krishna Tiwari, Matthew G Roberts, Ashley Xavier, Manh T Vu, Jinghao Men, Matthieu Maire, Sarubini Kananathan, Emma L Fairbanks, Johannes P Meyer, Chinmay Arankalle, Thawfeek M Varusai, Vincent Knight-Schrijver, Lu Li, Corina Dueñas-Roca, Gaurhari Dass, Sarah M Keating, Young M Park, Nicola Buso, Nicolas Rodriguez, Michael Hucka, and Henning Hermjakob

BioModels — 15 years of sharing computational models in life science.

Nucl. Acids Res. 2020

Mihai Glont, Tung V N Nguyen, Martin Graesslin, Robert Hälke, Raza Ali, Jochen Schramm, Sarala M Wimalaratne, Varun B Kothamachu, Nicolas Rodriguez, Maciej J Swat, Jurgen Eils, Roland Eils, Camille Laibe, Rahuman S Malik-Sheriff, Vijayalakshmi Chelliah, Nicolas Le Novère, and Henning Hermjakob

BioModels: expanding horizons to include more modelling approaches and formats.

Nucl. Acids Res. 2018

BioModels is supported by the European Molecular Biology Laboratory, the Biotechnology and Biological Sciences Research Council (Multimod, BB/N019482/1) and the Innovative Medicines Initiative (TransQST, 116030).

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