Hatzimanikatis1999-Regulation of the G1-S transition of the mammalian cell cycle.

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Model Identifier
MODEL2005070001
Short description
A mathematical model of regulation of the G1-S transition of the mammalian cell cycle has been formulated to organize available experimental molecular-level information in a systematic quantitative framework and to evaluate the ability of this manifestation of current knowledge to calculate correctly experimentally observed phenotypes. This model includes nine components and includes cyclin-cdk complexes, a pocket protein (pRb), a transcription factor (E2F-1), and a cyclin-cdk complex inhibitor. Simulation of the model equations yields stable oscillatory solutions corresponding to cell proliferation and asymptotically stable solutions corresponding to cell cycle arrest (quiescence). Bifurcation analysis of the system suggests changes in the intracellular concentrations of either E2F or cyclin E can activate cell proliferation and that co-overexpression of these molecules can prevent cell proliferation. Further analysis suggests that the amount of inhibitor necessary to prevent cell proliferation is independent of the concentrations of cyclin E and E2F and depends only on the equilibrium ratio between the bound and unbound forms of the inhibitor to the complex.
Format
SBML (L2V4)
Related Publication
  • A mathematical description of regulation of the G1-S transition of the mammalian cell cycle.
  • Hatzimanikatis V, Lee KH, Bailey JE
  • Biotechnology and bioengineering , 12/ 1999 , Volume 65 , Issue 6 , pages: 631-637 , PubMed ID: 10550769
  • Cargill Bioscience Division, Wayzata, Minnesota 55391-2397, USA.
  • A mathematical model of regulation of the G1-S transition of the mammalian cell cycle has been formulated to organize available experimental molecular-level information in a systematic quantitative framework and to evaluate the ability of this manifestation of current knowledge to calculate correctly experimentally observed phenotypes. This model includes nine components and includes cyclin-cdk complexes, a pocket protein (pRb), a transcription factor (E2F-1), and a cyclin-cdk complex inhibitor. Simulation of the model equations yields stable oscillatory solutions corresponding to cell proliferation and asymptotically stable solutions corresponding to cell cycle arrest (quiescence). Bifurcation analysis of the system suggests changes in the intracellular concentrations of either E2F or cyclin E can activate cell proliferation and that co-overexpression of these molecules can prevent cell proliferation. Further analysis suggests that the amount of inhibitor necessary to prevent cell proliferation is independent of the concentrations of cyclin E and E2F and depends only on the equilibrium ratio between the bound and unbound forms of the inhibitor to the complex.
Contributors
Submitter of the first revision: Ahmad Zyoud
Submitter of this revision: Ahmad Zyoud
Modellers: Ahmad Zyoud

Metadata information

isDescribedBy (1 statement)
PubMed 10550769

hasProperty (2 statements)
Mathematical Modelling Ontology Ordinary differential equation model
Gene Ontology cell cycle

occursIn (1 statement)

Curation status
Non-curated


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Model files

Hatzimanikatis1999.xml SBML L2V4 Hatzimanikatis1999-Regulation of the G1-S transition of the mammalian cell cycle. 42.28 KB Preview | Download

Additional files

Hatzimanikatis1999.cps COPASI version 4.27 (Build 217) Hatzimanikatis1999-Regulation of the G1-S transition of the mammalian cell cycle. 86.91 KB Preview | Download

  • Model originally submitted by : Ahmad Zyoud
  • Submitted: May 7, 2020 6:05:04 PM
  • Last Modified: May 7, 2020 6:05:04 PM
Revisions
  • Version: 1 public model Download this version
    • Submitted on: May 7, 2020 6:05:04 PM
    • Submitted by: Ahmad Zyoud
    • With comment: Import of Hatzimanikatis1999-Regulation of the G1-S transition of the mammalian cell cycle.