Whole Genome Metabolism - Streptococcus pneumoniae (strain AP200)

  public model
Short description
Whole Genome Metabolism of "Streptococcus pneumoniae (strain AP200)"
This is a whole genome metabolism model of Streptococcus pneumoniae (strain AP200).
This model has been automatically generated by the SuBliMinaL Toolbox and libAnnotationSBML using information coming from from KEGG (release 66, April 2013, accessed via the resource's web services interface) and, where relevant, augmented with metabolic pathway information extracted from MetaCyc (version 17.0, March 2013).
This model has been produced by the path2models project and is currently hosted on BioModels Database and identified by: BMID000000142041 .
Other models with the same genus include BMID000000001542 BMID000000001543 BMID000000001544 BMID000000001545 BMID000000001546 BMID000000001547 BMID000000001548 BMID000000001549 BMID000000001550 BMID000000001551 BMID000000001552 BMID000000001553 BMID000000001554 BMID000000001555 BMID000000034321 BMID000000034322 BMID000000034323 BMID000000034324 BMID000000034325 BMID000000034326 BMID000000034327 BMID000000034328 BMID000000034329 BMID000000034330 BMID000000034331 BMID000000034332 BMID000000034333 BMID000000034334 BMID000000034335 BMID000000034336 BMID000000034337 BMID000000034338 BMID000000034339 BMID000000034340 BMID000000034341 BMID000000034342 BMID000000034343 BMID000000034344 BMID000000034345 BMID000000034346 BMID000000034347 BMID000000034348 BMID000000034349 BMID000000034350 BMID000000034351 BMID000000034352 BMID000000034353 BMID000000034354 BMID000000034355 BMID000000034356 BMID000000034357 BMID000000034358 BMID000000034359 BMID000000034360 BMID000000034361 BMID000000034362 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To the extent possible under law, all copyright and related or neighbouring rights to this encoded model have been dedicated to the public domain worldwide. Please refer to CC0 Public Domain Dedication for more information.
Format
SBML (L2V4)
Related Publication
  • Path2Models: large-scale generation of computational models from biochemical pathway maps.
  • Büchel F, Rodriguez N, Swainston N, Wrzodek C, Wrzodek C, Czauderna T, Keller R, Mittag F, Schubert M, Glont M, Golebiewski M, van Iersel MP, Keating SM, Rall M, Wybrow M, Hermjakob H, Hucka M, Kell DB, Müller W, Mendes P, Zell A, Chaouiya C, Saez-Rodriguez J, Schreiber F, Laibe C, Dräger A, Nicolas Le Novère
  • BMC systems biology , 11/ 2013 , Volume 7 , pages: 116
  • Systems biology projects and omics technologies have led to a growing number of biochemical pathway models and reconstructions. However, the majority of these models are still created de novo, based on literature mining and the manual processing of pathway data.To increase the efficiency of model creation, the Path2Models project has automatically generated mathematical models from pathway representations using a suite of freely available software. Data sources include KEGG, BioCarta, MetaCyc and SABIO-RK. Depending on the source data, three types of models are provided: kinetic, logical and constraint-based. Models from over 2 600 organisms are encoded consistently in SBML, and are made freely available through BioModels Database at http://www.ebi.ac.uk/biomodels-main/path2models. Each model contains the list of participants, their interactions, the relevant mathematical constructs, and initial parameter values. Most models are also available as easy-to-understand graphical SBGN maps.To date, the project has resulted in more than 140 000 freely available models. Such a resource can tremendously accelerate the development of mathematical models by providing initial starting models for simulation and analysis, which can be subsequently curated and further parameterized.
Contributors
Path2Models project

Metadata information

isDerivedFrom
snp
occursIn

Curation status
Non-curated

Name Description Size Actions

Model files

BMID000000142041_url.xml Path2Models entry for E. coli 18.33 MB Preview | Download

Additional files

Streptococcus.zip All files for E. coli 214.51 MB Preview | Download

  • Model originally submitted by : Path2Models project
  • Submitted: 19-May-2012 18:13:50
  • Last Modified: 19-May-2012 18:13:50
Revisions
  • Version: 1 public model Download this version
    • Submitted on: 19-May-2012 18:13:50
    • Submitted by: Path2Models project
    • With comment: Import of 'Whole Genome Metabolism - Streptococcus pneumoniae (strain AP200)'.