Whole Genome Metabolism - Escherichia coli (strain SE11)

  public model
Model Identifier
BMID000000141156
Short description
Whole Genome Metabolism of "Escherichia coli (strain SE11)"
This is a whole genome metabolism model of Escherichia coli (strain SE11).
This model has been automatically generated by the SuBliMinaL Toolbox and libAnnotationSBML using information coming from from KEGG (release 66, April 2013, accessed via the resource's web services interface) and, where relevant, augmented with metabolic pathway information extracted from MetaCyc (version 17.0, March 2013).
This model has been produced by the path2models project and is currently hosted on BioModels Database and identified by: BMID000000141156 .
Other models with the same genus include BMID000000001173 BMID000000001174 BMID000000001175 BMID000000001176 BMID000000001177 BMID000000001178 BMID000000001179 BMID000000001180 BMID000000001181 BMID000000001182 BMID000000001183 BMID000000001184 BMID000000001185 BMID000000001186 BMID000000001187 BMID000000001188 BMID000000001189 BMID000000032650 BMID000000032651 BMID000000032652 BMID000000032653 BMID000000032654 BMID000000032655 BMID000000032656 BMID000000032657 BMID000000032658 BMID000000032659 BMID000000032660 BMID000000032661 BMID000000032662 BMID000000032663 BMID000000032664 BMID000000032665 BMID000000032666 BMID000000032667 BMID000000032668 BMID000000032669 BMID000000032670 BMID000000032671 BMID000000032672 BMID000000032673 BMID000000032674 BMID000000032675 BMID000000032676 BMID000000032677 BMID000000032678 BMID000000032679 BMID000000032680 BMID000000032681 BMID000000032682 BMID000000032683 BMID000000032684 BMID000000032685 BMID000000032686 BMID000000032687 BMID000000032688 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To the extent possible under law, all copyright and related or neighbouring rights to this encoded model have been dedicated to the public domain worldwide. Please refer to CC0 Public Domain Dedication for more information.
Format
SBML (L2V4)
Related Publication
  • Path2Models: large-scale generation of computational models from biochemical pathway maps.
  • Büchel F, Rodriguez N, Swainston N, Wrzodek C, Wrzodek C, Czauderna T, Keller R, Mittag F, Schubert M, Glont M, Golebiewski M, van Iersel MP, Keating SM, Rall M, Wybrow M, Hermjakob H, Hucka M, Kell DB, Müller W, Mendes P, Zell A, Chaouiya C, Saez-Rodriguez J, Schreiber F, Laibe C, Dräger A, Nicolas Le Novère
  • BMC systems biology , 11/ 2013 , Volume 7 , pages: 116 , PubMed ID: 24180668
  • Systems biology projects and omics technologies have led to a growing number of biochemical pathway models and reconstructions. However, the majority of these models are still created de novo, based on literature mining and the manual processing of pathway data.To increase the efficiency of model creation, the Path2Models project has automatically generated mathematical models from pathway representations using a suite of freely available software. Data sources include KEGG, BioCarta, MetaCyc and SABIO-RK. Depending on the source data, three types of models are provided: kinetic, logical and constraint-based. Models from over 2 600 organisms are encoded consistently in SBML, and are made freely available through BioModels Database at http://www.ebi.ac.uk/biomodels-main/path2models. Each model contains the list of participants, their interactions, the relevant mathematical constructs, and initial parameter values. Most models are also available as easy-to-understand graphical SBGN maps.To date, the project has resulted in more than 140 000 freely available models. Such a resource can tremendously accelerate the development of mathematical models by providing initial starting models for simulation and analysis, which can be subsequently curated and further parameterized.
Contributors
Path2Models project

Metadata information

is
BioModels Database BMID000000141156
isDescribedBy
PubMed 18931093
occursIn
isDerivedFrom
KEGG Genome ecy

Curation status
Non-curated

Name Description Size Actions

Model files

BMID000000141156_url.xml Path2Models entry for E. coli 15.25 MB Preview | Download

Additional files

Escherichia.zip All files for E. coli 188.88 MB Preview | Download

  • Model originally submitted by : Path2Models project
  • Submitted: May 19, 2012 5:05:21 PM
  • Last Modified: May 19, 2012 5:05:21 PM
Revisions
  • Version: 1 public model Download this version
    • Submitted on: May 19, 2012 5:05:21 PM
    • Submitted by: Path2Models project
    • With comment: Import of 'Whole Genome Metabolism - Escherichia coli (strain SE11)'.
Legends
: Variable used inside SBML models


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