Whole Genome Metabolism - Clostridium botulinum BKT015925

  public model
Model Identifier
BMID000000140584
Short description
Whole Genome Metabolism of "Clostridium botulinum BKT015925"
This is a whole genome metabolism model of Clostridium botulinum BKT015925.
This model has been automatically generated by the SuBliMinaL Toolbox and libAnnotationSBML using information coming from from KEGG (release 66, April 2013, accessed via the resource's web services interface) and, where relevant, augmented with metabolic pathway information extracted from MetaCyc (version 17.0, March 2013).
This model has been produced by the path2models project and is currently hosted on BioModels Database and identified by: BMID000000140584 .
Other models with the same genus include BMID000000001046 BMID000000001047 BMID000000001048 BMID000000001049 BMID000000001050 BMID000000001051 BMID000000001052 BMID000000001053 BMID000000001054 BMID000000001055 BMID000000001056 BMID000000001057 BMID000000001058 BMID000000001059 BMID000000001060 BMID000000001061 BMID000000031989 BMID000000031990 BMID000000031991 BMID000000031992 BMID000000031993 BMID000000031994 BMID000000031995 BMID000000031996 BMID000000031997 BMID000000031998 BMID000000031999 BMID000000032000 BMID000000032001 BMID000000032002 BMID000000032003 BMID000000032004 BMID000000032005 BMID000000032006 BMID000000032007 BMID000000032008 BMID000000032009 BMID000000032010 BMID000000032011 BMID000000032012 BMID000000032013 BMID000000032014 BMID000000032015 BMID000000032016 BMID000000032017 BMID000000032018 BMID000000032019 BMID000000032020 BMID000000032021 BMID000000032022 BMID000000032023 BMID000000032024 BMID000000032025 BMID000000032026 BMID000000032027 BMID000000032028 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To the extent possible under law, all copyright and related or neighbouring rights to this encoded model have been dedicated to the public domain worldwide. Please refer to CC0 Public Domain Dedication for more information.
Format
SBML (L2V4)
Related Publication
  • Path2Models: large-scale generation of computational models from biochemical pathway maps.
  • Büchel F, Rodriguez N, Swainston N, Wrzodek C, Wrzodek C, Czauderna T, Keller R, Mittag F, Schubert M, Glont M, Golebiewski M, van Iersel MP, Keating SM, Rall M, Wybrow M, Hermjakob H, Hucka M, Kell DB, Müller W, Mendes P, Zell A, Chaouiya C, Saez-Rodriguez J, Schreiber F, Laibe C, Dräger A, Nicolas Le Novère
  • BMC systems biology , 11/ 2013 , Volume 7 , pages: 116 , PubMed ID: 24180668
  • Systems biology projects and omics technologies have led to a growing number of biochemical pathway models and reconstructions. However, the majority of these models are still created de novo, based on literature mining and the manual processing of pathway data.To increase the efficiency of model creation, the Path2Models project has automatically generated mathematical models from pathway representations using a suite of freely available software. Data sources include KEGG, BioCarta, MetaCyc and SABIO-RK. Depending on the source data, three types of models are provided: kinetic, logical and constraint-based. Models from over 2 600 organisms are encoded consistently in SBML, and are made freely available through BioModels Database at http://www.ebi.ac.uk/biomodels-main/path2models. Each model contains the list of participants, their interactions, the relevant mathematical constructs, and initial parameter values. Most models are also available as easy-to-understand graphical SBGN maps.To date, the project has resulted in more than 140 000 freely available models. Such a resource can tremendously accelerate the development of mathematical models by providing initial starting models for simulation and analysis, which can be subsequently curated and further parameterized.
Contributors
Path2Models project

Metadata information

is
BioModels Database BMID000000140584
isDescribedBy
PubMed 21486474
isDerivedFrom
KEGG Genome cbn

Curation status
Non-curated

Name Description Size Actions

Model files

BMID000000140584_url.xml Path2Models entry for E. coli 29.19 MB Preview | Download

Additional files

Clostridium.zip All files for E. coli 128.76 MB Preview | Download

  • Model originally submitted by : Path2Models project
  • Submitted: May 19, 2012 4:26:39 PM
  • Last Modified: May 19, 2012 4:26:39 PM
Revisions
  • Version: 1 public model Download this version
    • Submitted on: May 19, 2012 4:26:39 PM
    • Submitted by: Path2Models project
    • With comment: Import of 'Whole Genome Metabolism - Clostridium botulinum BKT015925'.
Legends
: Variable used inside SBML models


Species
No records to display
Reactions
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