Whole Genome Metabolism - Bacillus cereus (strain AH820)

  public model
Model Identifier
BMID000000140499
Short description
Whole Genome Metabolism of "Bacillus cereus (strain AH820)"
This is a whole genome metabolism model of Bacillus cereus (strain AH820).
This model has been automatically generated by the SuBliMinaL Toolbox and libAnnotationSBML using information coming from from KEGG (release 66, April 2013, accessed via the resource's web services interface) and, where relevant, augmented with metabolic pathway information extracted from MetaCyc (version 17.0, March 2013).
This model has been produced by the path2models project and is currently hosted on BioModels Database and identified by: BMID000000140499 .
Other models with the same genus include BMID000000001469 BMID000000001470 BMID000000001471 BMID000000001472 BMID000000001473 BMID000000001474 BMID000000001475 BMID000000001476 BMID000000001477 BMID000000001478 BMID000000001479 BMID000000001480 BMID000000001481 BMID000000001482 BMID000000001483 BMID000000001484 BMID000000033987 BMID000000033988 BMID000000033989 BMID000000033990 BMID000000033991 BMID000000033992 BMID000000033993 BMID000000033994 BMID000000033995 BMID000000033996 BMID000000033997 BMID000000033998 BMID000000033999 BMID000000034000 BMID000000034001 BMID000000034002 BMID000000034003 BMID000000034004 BMID000000034005 BMID000000034006 BMID000000034007 BMID000000034008 BMID000000034009 BMID000000034010 BMID000000034011 BMID000000034012 BMID000000034013 BMID000000034014 BMID000000034015 BMID000000034016 BMID000000034017 BMID000000034018 BMID000000034019 BMID000000034020 BMID000000034021 BMID000000034022 BMID000000034023 BMID000000034024 BMID000000034025 BMID000000034026 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To the extent possible under law, all copyright and related or neighbouring rights to this encoded model have been dedicated to the public domain worldwide. Please refer to CC0 Public Domain Dedication for more information.
Format
SBML (L2V4)
Related Publication
  • Path2Models: large-scale generation of computational models from biochemical pathway maps.
  • Büchel F, Rodriguez N, Swainston N, Wrzodek C, Wrzodek C, Czauderna T, Keller R, Mittag F, Schubert M, Glont M, Golebiewski M, van Iersel MP, Keating SM, Rall M, Wybrow M, Hermjakob H, Hucka M, Kell DB, Müller W, Mendes P, Zell A, Chaouiya C, Saez-Rodriguez J, Schreiber F, Laibe C, Dräger A, Nicolas Le Novère
  • BMC systems biology , 11/ 2013 , Volume 7 , pages: 116 , PubMed ID: 24180668
  • Systems biology projects and omics technologies have led to a growing number of biochemical pathway models and reconstructions. However, the majority of these models are still created de novo, based on literature mining and the manual processing of pathway data.To increase the efficiency of model creation, the Path2Models project has automatically generated mathematical models from pathway representations using a suite of freely available software. Data sources include KEGG, BioCarta, MetaCyc and SABIO-RK. Depending on the source data, three types of models are provided: kinetic, logical and constraint-based. Models from over 2 600 organisms are encoded consistently in SBML, and are made freely available through BioModels Database at http://www.ebi.ac.uk/biomodels-main/path2models. Each model contains the list of participants, their interactions, the relevant mathematical constructs, and initial parameter values. Most models are also available as easy-to-understand graphical SBGN maps.To date, the project has resulted in more than 140 000 freely available models. Such a resource can tremendously accelerate the development of mathematical models by providing initial starting models for simulation and analysis, which can be subsequently curated and further parameterized.
Contributors
Path2Models project

Metadata information

is
BioModels Database BMID000000140499
occursIn
isDerivedFrom
KEGG Genome bcu

Curation status
Non-curated

Name Description Size Actions

Model files

BMID000000140499_url.xml Path2Models entry for E. coli 54.40 MB Preview | Download

Additional files

Bacillus.zip All files for E. coli 196.50 MB Preview | Download

  • Model originally submitted by : Path2Models project
  • Submitted: May 19, 2012 4:20:06 PM
  • Last Modified: May 19, 2012 4:20:06 PM
Revisions
  • Version: 1 public model Download this version
    • Submitted on: May 19, 2012 4:20:06 PM
    • Submitted by: Path2Models project
    • With comment: Import of 'Whole Genome Metabolism - Bacillus cereus (strain AH820)'.
Legends
: Variable used inside SBML models


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Reactions
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