UniRule2GO mapping
The HAMAP (High-Quality Automated and Manual
Annotation of Microbial Proteomes) project at the Swiss Institute of Bioinformatics (SIB) aims to
annotate Swiss-Prot proteins originating from bacterial and archaeal genome sequencing projects. It
is also used to annotate proteins encoded by complete plant and algal plastid genomes (e.g.
chloroplasts, cyanelles, apicoplasts, non-photosynthetic plastids).
GO terms are manually assigned to each HAMAP family rule by HAMAP curators. HAMAP family rules are a
collection of orthologous microbial protein families, from bacteria, archaea and plastids, generated
manually by expert curators. The assigned GO terms are then transferred to all the proteins that
belong to each HAMAP family. Only GO terms from the molecular function and biological process
ontologies are assigned. GO annotations using this technique will receive the evidence code Inferred
from Electronic Annotation (IEA). These annotations are updated monthly by HAMAP and are available
for download on both GO and GOA EBI ftp sites.
The HAMAP2GO mapping file is available at:
http://www.geneontology.org/external2go/hamap2go
For further information, please see:
http://www.expasy.org/sprot/hamap
Example. proS from Neisseria meningitidis (UniProtKB accession A1KUG4) is
part of the HAMAP family rule MF_01569. This family rule has been manually mapped to the GO term
‘proline-tRNA ligase activity’ (GO:0004827), therefore proS, and any other member of MF_01569, will
automatically be assigned this GO term.
The annotations created by HAMAP2GO mapping are displayed in the GOA gene association files (Fig. 1),
the HAMAP family rule will be indicated in column 8 ('With') and column 6 (DB:Reference) will
indicate that this method has the GO reference: GO_REF:0000020. HAMAP2GO annotations can also be
viewed in QuickGO .