Current Composition of Pig UniProt-GOA

Current Composition of Pig GOA



The following table describes the latest version of GOA Pig (version 77), released on 31 January, 2018 and assembled using the publicly released data available in the source databases on 27 January, 2018.


GO Annotation Source Number of Associations Number of Distinct Gene Products
Total GOA annotations 171404 33019
Total Electronic GO annotation 137900 31903
Total Manual GO annotations 33504 6634
Manual GO annotation by UniProt (EBI Curators) 2960 279
Manual GO annotation by UniProt (SIB Curators) 2613 515
Manual GO annotation by UniProt (PIR Curators) 29 7
Total number of Pubmed references 1330
Number of distinct Pubmed references 346
Electronic GO annotation using InterPro to GO mapping 46857 22754
Electronic GO annotation using Swiss-Prot keyword to GO mapping 21026 14312
Electronic GO annotation using UniProt Subcellular Location to GO mapping 5047 4552
Electronic GO annotation using EC to GO mapping 1473 1248
Electronic GO annotation using projections based on Ensembl orthologs 46390 5824
Electronic GO annotation using UniPathway to GO mapping 420 404
Electronic GO annotation using UniRule to GO mapping 4731 2971
Logical inferences based on GOC rules and annotations from electronic sources 10215 7297
Manual GO annotation by AgBase 1585 273
Manual GO annotation by MGI 17 14
Manual GO annotation by BHF-UCL 241 83
Manual GO annotation by HGNC 75 14
Manual GO annotation by Reactome 11 5
Manual GO annotation by IntAct 46 29
Manual GO annotation by RefGenome 25880 6001
Manual GO annotation by CACAO 13 7
Manual GO annotation by UniProt for Automated Function Prediction SIG 24 11
Manual GO annotation by ParkinsonsUK-UCL 2 1
Manual GO annotation by GO_Central 4 3
Manual GO annotation by ARUK-UCL 4 1
Logical inferences based on GOC rules and annotations from manual sources 1741 1530
Logical inferences based on GOC rules and annotations from manual and electronic sources 11956 8006
UniProt-GOA collaborates with

Cardiovascular Gene Ontology Annotation Initiative DictyBase Ensembl Compara Enzyme Nomenclature FlyBase  GO Consortium logo GUDMAP Gramene HAMAP HGNC HPA IntAct InterPro LIFEdb MGI MTBbase logo Reactome RI RGD SGD SwissProt TAIR TIGR WormBase ZFIN The Evidence & Conclusion Ontology