Current Composition of Pig UniProt-GOA

Current Composition of Pig GOA



The following table describes the latest version of GOA Pig (version 74), released on 25 October, 2017 and assembled using the publicly released data available in the source databases on 21 October, 2017.


GO Annotation Source Number of Associations Number of Distinct Gene Products
Total GOA annotations 116629 15970
Total Electronic GO annotation 82705 14840
Total Manual GO annotations 33924 6754
Manual GO annotation by UniProt (EBI Curators) 2791 268
Manual GO annotation by UniProt (SIB Curators) 2491 484
Manual GO annotation by UniProt (PIR Curators) 29 7
Total number of Pubmed references 1235
Number of distinct Pubmed references 335
Electronic GO annotation using InterPro to GO mapping 15879 8458
Electronic GO annotation using Swiss-Prot keyword to GO mapping 8074 5885
Electronic GO annotation using UniProt Subcellular Location to GO mapping 2243 1906
Electronic GO annotation using EC to GO mapping 619 509
Electronic GO annotation using projections based on Ensembl orthologs 47692 6081
Electronic GO annotation using UniPathway to GO mapping 212 204
Electronic GO annotation using UniRule to GO mapping 1561 1032
Logical inferences based on GOC rules and annotations from electronic sources 4591 3151
Manual GO annotation by AgBase 1608 271
Manual GO annotation by MGI 17 14
Manual GO annotation by BHF-UCL 221 78
Manual GO annotation by HGNC 71 13
Manual GO annotation by Reactome 11 5
Manual GO annotation by IntAct 43 27
Manual GO annotation by RefGenome 26598 6146
Manual GO annotation by CACAO 13 7
Manual GO annotation by UniProt for Automated Function Prediction SIG 22 10
Manual GO annotation by ParkinsonsUK-UCL 2 1
Manual GO annotation by GO_Central 4 3
Manual GO annotation by ARUK-UCL 3 1
Logical inferences based on GOC rules and annotations from manual sources 1834 1591
Logical inferences based on GOC rules and annotations from manual and electronic sources 6425 3913
UniProt-GOA collaborates with

Cardiovascular Gene Ontology Annotation Initiative DictyBase Ensembl Compara Enzyme Nomenclature FlyBase  GO Consortium logo GUDMAP Gramene HAMAP HGNC HPA IntAct InterPro LIFEdb MGI MTBbase logo Reactome RI RGD SGD SwissProt TAIR TIGR WormBase ZFIN The Evidence & Conclusion Ontology