Current Composition of Pig UniProt-GOA

Current Composition of Pig GOA



The following table describes the latest version of GOA Pig (version 81), released on 24 May, 2018 and assembled using the publicly released data available in the source databases on 19 May, 2018.


GO Annotation Source Number of Associations Number of Distinct Gene Products
Total GOA annotations 227406 40037
Total Electronic GO annotation 194061 39006
Total Manual GO annotations 33345 6636
Manual GO annotation by UniProt (EBI Curators) 2959 283
Manual GO annotation by UniProt (SIB Curators) 2652 524
Manual GO annotation by UniProt (PIR Curators) 35 8
Total number of Pubmed references 1370
Number of distinct Pubmed references 356
Electronic GO annotation using InterPro to GO mapping 42496 21578
Electronic GO annotation using Swiss-Prot keyword to GO mapping 20309 13946
Electronic GO annotation using UniProt Subcellular Location to GO mapping 4806 4309
Electronic GO annotation using EC to GO mapping 1480 1261
Electronic GO annotation using projections based on Ensembl orthologs 91789 11088
Electronic GO annotation using UniPathway to GO mapping 412 396
Electronic GO annotation using UniRule to GO mapping 4888 3135
Electronic GO annotation using RNAcentral Rfam to GO mapping 13130 6113
Logical inferences based on GOC rules and annotations from electronic sources 13075 10216
Manual GO annotation by AgBase 1574 273
Manual GO annotation by MGI 17 14
Manual GO annotation by BHF-UCL 266 88
Manual GO annotation by HGNC 75 14
Manual GO annotation by Reactome 10 5
Manual GO annotation by IntAct 53 33
Manual GO annotation by RefGenome 25642 5997
Manual GO annotation by CACAO 13 7
Manual GO annotation by UniProt for Automated Function Prediction SIG 24 11
Manual GO annotation by ParkinsonsUK-UCL 2 1
Manual GO annotation by GO_Central 4 3
Manual GO annotation by ARUK-UCL 7 2
Manual GO annotation by Complex Portal 12 1
Logical inferences based on GOC rules and annotations from manual sources 1676 1494
Logical inferences based on GOC rules and annotations from manual and electronic sources 14751 10874
UniProt-GOA collaborates with

Cardiovascular Gene Ontology Annotation Initiative DictyBase Ensembl Compara Enzyme Nomenclature FlyBase  GO Consortium logo GUDMAP Gramene HAMAP HGNC HPA IntAct InterPro LIFEdb MGI MTBbase logo Reactome RI RGD SGD SwissProt TAIR TIGR WormBase ZFIN The Evidence & Conclusion Ontology