Current Composition of Cow UniProt-GOA

Current Composition of Cow GOA



The following table describes the latest version of GOA Cow (version 143), released on 24 May, 2018 and assembled using the publicly released data available in the source databases on 19 May, 2018.


GO Annotation Source Number of Associations Number of Distinct Gene Products
Total GOA annotations 249041 50657
Total Electronic GO annotation 194197 49587
Total Manual GO annotations 54844 9967
Manual GO annotation by UniProt (EBI Curators) 5580 795
Manual GO annotation by UniProt (SIB Curators) 11118 2269
Manual GO annotation by UniProt (PIR Curators) 50 16
Total number of Pubmed references 3236
Number of distinct Pubmed references 905
Electronic GO annotation using InterPro to GO mapping 17192 10028
Electronic GO annotation using Swiss-Prot keyword to GO mapping 14143 9535
Electronic GO annotation using UniProt Subcellular Location to GO mapping 5410 4289
Electronic GO annotation using EC to GO mapping 1052 806
Electronic GO annotation using projections based on Ensembl orthologs 83800 10830
Electronic GO annotation using UniPathway to GO mapping 438 420
Electronic GO annotation using UniRule to GO mapping 1669 1164
Electronic GO annotation using RNAcentral Rfam to GO mapping 36649 29053
Logical inferences based on GOC rules and annotations from electronic sources 31370 29519
Manual GO annotation by Proteome Inc. extracted from Locus Link 4 3
Manual GO annotation by AgBase 2327 431
Manual GO annotation by MGI 55 34
Manual GO annotation by BHF-UCL 245 75
Manual GO annotation by HGNC 125 25
Manual GO annotation by WormBase 28 3
Manual GO annotation by Reactome 574 149
Manual GO annotation by IntAct 328 150
Manual GO annotation by DictyBase 1 1
Manual GO annotation by RefGenome 34090 8140
Manual GO annotation by CACAO 15 11
Manual GO annotation by UniProt for Automated Function Prediction SIG 230 73
Manual GO annotation by ParkinsonsUK-UCL 23 9
Manual GO annotation by GO_Central 21 10
Manual GO annotation by SynGO (UCL Curators) 3 1
Manual GO annotation by ARUK-UCL 15 5
Manual GO annotation by Complex Portal 12 1
Logical inferences based on GOC rules and annotations from manual sources 2474 2223
Logical inferences based on GOC rules and annotations from manual and electronic sources 33844 30287
UniProt-GOA collaborates with

Cardiovascular Gene Ontology Annotation Initiative DictyBase Ensembl Compara Enzyme Nomenclature FlyBase  GO Consortium logo GUDMAP Gramene HAMAP HGNC HPA IntAct InterPro LIFEdb MGI MTBbase logo Reactome RI RGD SGD SwissProt TAIR TIGR WormBase ZFIN The Evidence & Conclusion Ontology