Current Composition of Rat UniProt-GOA

Current Composition of Rat GOA



The following table describes the latest version of GOA Rat (version 160), released on 22 November, 2017 and assembled using the publicly released data available in the source databases on 18 November, 2017.


GO Annotation Source Number of Associations Number of Distinct Gene Products
Total GOA annotations 435538 27483
Total Electronic GO annotation 90995 22943
Total Manual GO annotations 344543 19643
Manual GO annotation by UniProt (EBI Curators) 9248 1548
Manual GO annotation by UniProt (SIB Curators) 16150 2941
Manual GO annotation by UniProt (PIR Curators) 68 21
Total number of Pubmed references 280511
Number of distinct Pubmed references 62533
Electronic GO annotation using InterPro to GO mapping 20109 11790
Electronic GO annotation using Swiss-Prot keyword to GO mapping 17854 11988
Electronic GO annotation using UniProt Subcellular Location to GO mapping 5815 4731
Electronic GO annotation using EC to GO mapping 984 765
Electronic GO annotation using projections based on Ensembl orthologs 29544 4922
Electronic GO annotation using UniPathway to GO mapping 536 513
Electronic GO annotation using UniRule to GO mapping 1565 1100
Logical inferences based on GOC rules and annotations from electronic sources 7482 5173
Manual GO annotation by Proteome Inc. extracted from Locus Link 7 5
Manual GO annotation by AgBase 544 61
Manual GO annotation by MGI 816 386
Manual GO annotation by FB 7 6
Manual GO annotation by RGD 275592 16383
Manual GO annotation by BHF-UCL 2284 452
Manual GO annotation by HGNC 557 148
Manual GO annotation by WormBase 14 11
Manual GO annotation by Roslin Institute 1 1
Manual GO annotation by Reactome 668 260
Manual GO annotation by IntAct 1640 644
Manual GO annotation by DictyBase 1 1
Manual GO annotation by DFLAT 5 3
Manual GO annotation by RefGenome 34918 8519
Manual GO annotation by NTNU_SB 95 30
Manual GO annotation by CACAO 83 60
Manual GO annotation by UniProt for Automated Function Prediction SIG 383 97
Manual GO annotation by ParkinsonsUK-UCL 843 214
Manual GO annotation by Alzheimers Project at University of Toronto 96 5
Manual GO annotation by GO_Central 56 32
Manual GO annotation by SynGO 189 92
Manual GO annotation by SynGO (UCL Curators) 56 27
Manual GO annotation by ARUK-UCL 222 69
Logical inferences based on GOC rules and annotations from manual sources 7106 4366
Logical inferences based on GOC rules and annotations from manual and electronic sources 14588 6847
UniProt-GOA collaborates with

Cardiovascular Gene Ontology Annotation Initiative DictyBase Ensembl Compara Enzyme Nomenclature FlyBase  GO Consortium logo GUDMAP Gramene HAMAP HGNC HPA IntAct InterPro LIFEdb MGI MTBbase logo Reactome RI RGD SGD SwissProt TAIR TIGR WormBase ZFIN The Evidence & Conclusion Ontology