Current Composition of Rat UniProt-GOA

Current Composition of Rat GOA



The following table describes the latest version of GOA Rat (version 166), released on 24 May, 2018 and assembled using the publicly released data available in the source databases on 19 May, 2018.


GO Annotation Source Number of Associations Number of Distinct Gene Products
Total GOA annotations 321854 50887
Total Electronic GO annotation 194326 48975
Total Manual GO annotations 127528 14686
Manual GO annotation by UniProt (EBI Curators) 9264 1574
Manual GO annotation by UniProt (SIB Curators) 16746 3045
Manual GO annotation by UniProt (PIR Curators) 77 23
Total number of Pubmed references 63120
Number of distinct Pubmed references 23686
Electronic GO annotation using InterPro to GO mapping 22731 12763
Electronic GO annotation using Swiss-Prot keyword to GO mapping 19093 12472
Electronic GO annotation using UniProt Subcellular Location to GO mapping 7119 5571
Electronic GO annotation using EC to GO mapping 1223 971
Electronic GO annotation using projections based on Ensembl orthologs 78259 10511
Electronic GO annotation using UniPathway to GO mapping 559 536
Electronic GO annotation using UniRule to GO mapping 2078 1435
Electronic GO annotation using RNAcentral Rfam to GO mapping 35038 24010
Logical inferences based on GOC rules and annotations from electronic sources 24654 22372
Manual GO annotation by Proteome Inc. extracted from Locus Link 8 6
Manual GO annotation by AgBase 537 61
Manual GO annotation by MGI 817 385
Manual GO annotation by FB 7 6
Manual GO annotation by RGD 57625 7770
Manual GO annotation by BHF-UCL 2393 485
Manual GO annotation by HGNC 556 148
Manual GO annotation by WormBase 14 11
Manual GO annotation by Reactome 741 274
Manual GO annotation by IntAct 1803 682
Manual GO annotation by DictyBase 1 1
Manual GO annotation by DFLAT 4 3
Manual GO annotation by RefGenome 34555 8513
Manual GO annotation by NTNU_SB 95 30
Manual GO annotation by CACAO 83 60
Manual GO annotation by UniProt for Automated Function Prediction SIG 382 97
Manual GO annotation by ParkinsonsUK-UCL 838 213
Manual GO annotation by Alzheimers Project at University of Toronto 96 5
Manual GO annotation by GO_Central 56 32
Manual GO annotation by SynGO 188 91
Manual GO annotation by SynGO (UCL Curators) 56 27
Manual GO annotation by ARUK-UCL 439 121
Manual GO annotation by Complex Portal 147 24
Logical inferences based on GOC rules and annotations from manual sources 3572 2867
Logical inferences based on GOC rules and annotations from manual and electronic sources 28226 23430
UniProt-GOA collaborates with

Cardiovascular Gene Ontology Annotation Initiative DictyBase Ensembl Compara Enzyme Nomenclature FlyBase  GO Consortium logo GUDMAP Gramene HAMAP HGNC HPA IntAct InterPro LIFEdb MGI MTBbase logo Reactome RI RGD SGD SwissProt TAIR TIGR WormBase ZFIN The Evidence & Conclusion Ontology