Current Composition of Rat UniProt-GOA

Current Composition of Rat GOA



The following table describes the latest version of GOA Rat (version 173), released on 16 January, 2019 and assembled using the publicly released data available in the source databases on 12 January, 2019.


GO Annotation Source Number of Associations Number of Distinct Gene Products
Total GOA annotations 348343 51257
Total Electronic GO annotation 190033 48843
Total Manual GO annotations 158310 16887
Manual GO annotation by UniProt (EBI Curators) 9441 1615
Manual GO annotation by UniProt (SIB Curators) 17979 3217
Manual GO annotation by UniProt (PIR Curators) 87 25
Total number of Pubmed references 127427
Number of distinct Pubmed references 24345
Electronic GO annotation using InterPro to GO mapping 21027 12305
Electronic GO annotation using Swiss-Prot keyword to GO mapping 18050 11941
Electronic GO annotation using UniProt Subcellular Location to GO mapping 6567 5137
Electronic GO annotation using EC to GO mapping 1131 887
Electronic GO annotation using projections based on Ensembl orthologs 77002 10347
Electronic GO annotation using UniPathway to GO mapping 553 531
Electronic GO annotation using UniRule to GO mapping 2196 1439
Electronic GO annotation using RNAcentral Rfam to GO mapping 35040 24011
Logical inferences based on GOC rules and annotations from electronic sources 24050 21907
Manual GO annotation by Proteome Inc. extracted from Locus Link 9 6
Manual GO annotation by AgBase 533 57
Manual GO annotation by MGI 824 389
Manual GO annotation by FB 7 6
Manual GO annotation by RGD 56928 7683
Manual GO annotation by BHF-UCL 2390 486
Manual GO annotation by HGNC 555 148
Manual GO annotation by WormBase 14 11
Manual GO annotation by Reactome 852 316
Manual GO annotation by IntAct 1547 629
Manual GO annotation by DictyBase 1 1
Manual GO annotation by DFLAT 4 3
Manual GO annotation by RefGenome 59747 13071
Manual GO annotation by NTNU_SB 95 30
Manual GO annotation by CACAO 83 60
Manual GO annotation by UniProt for Automated Function Prediction SIG 382 97
Manual GO annotation by ParkinsonsUK-UCL 838 213
Manual GO annotation by Alzheimers Project at University of Toronto 93 5
Manual GO annotation by GO_Central 57 33
Manual GO annotation by SynGO 188 91
Manual GO annotation by SynGO (UCL Curators) 56 27
Manual GO annotation by ARUK-UCL 660 168
Manual GO annotation by Complex Portal 272 46
Manual GO annotation by YuBioLab 253 238
Manual GO annotation by SynGO (via Noctua) 4415 600
Logical inferences based on GOC rules and annotations from manual sources 4417 3246
Logical inferences based on GOC rules and annotations from manual and electronic sources 28467 23123