Current Composition of Chicken UniProt-GOA

Current Composition of Chicken GOA



The following table describes the latest version of GOA Chicken (version 150), released on 24 May, 2018 and assembled using the publicly released data available in the source databases on 19 May, 2018.


GO Annotation Source Number of Associations Number of Distinct Gene Products
Total GOA annotations 164587 25641
Total Electronic GO annotation 134384 24947
Total Manual GO annotations 30203 5391
Manual GO annotation by UniProt (EBI Curators) 1638 294
Manual GO annotation by UniProt (SIB Curators) 3587 701
Manual GO annotation by UniProt (PIR Curators) 12 5
Total number of Pubmed references 5997
Number of distinct Pubmed references 1071
Electronic GO annotation using InterPro to GO mapping 28428 14343
Electronic GO annotation using Swiss-Prot keyword to GO mapping 12993 9605
Electronic GO annotation using UniProt Subcellular Location to GO mapping 2958 2501
Electronic GO annotation using EC to GO mapping 1088 905
Electronic GO annotation using projections based on Ensembl orthologs 74690 8890
Electronic GO annotation using UniPathway to GO mapping 374 354
Electronic GO annotation using UniRule to GO mapping 3046 1977
Electronic GO annotation using RNAcentral Rfam to GO mapping 2978 1500
Logical inferences based on GOC rules and annotations from electronic sources 6653 4717
Manual GO annotation by AgBase 5462 825
Manual GO annotation by MGI 27 19
Manual GO annotation by BHF-UCL 124 42
Manual GO annotation by HGNC 38 10
Manual GO annotation by Roslin Institute 23 10
Manual GO annotation by Reactome 404 110
Manual GO annotation by IntAct 232 112
Manual GO annotation by DFLAT 15 8
Manual GO annotation by RefGenome 18511 4260
Manual GO annotation by CACAO 8 8
Manual GO annotation by UniProt for Automated Function Prediction SIG 71 19
Manual GO annotation by ParkinsonsUK-UCL 20 10
Manual GO annotation by GO_Central 1 1
Manual GO annotation by SynGO 1 1
Manual GO annotation by Complex Portal 29 8
Logical inferences based on GOC rules and annotations from manual sources 1176 1025
Logical inferences based on GOC rules and annotations from manual and electronic sources 7829 5252
UniProt-GOA collaborates with

Cardiovascular Gene Ontology Annotation Initiative DictyBase Ensembl Compara Enzyme Nomenclature FlyBase  GO Consortium logo GUDMAP Gramene HAMAP HGNC HPA IntAct InterPro LIFEdb MGI MTBbase logo Reactome RI RGD SGD SwissProt TAIR TIGR WormBase ZFIN The Evidence & Conclusion Ontology