Current Composition of Chicken UniProt-GOA

Current Composition of Chicken GOA



The following table describes the latest version of GOA Chicken (version 154), released on 10 October, 2018 and assembled using the publicly released data available in the source databases on 06 October, 2018.


GO Annotation Source Number of Associations Number of Distinct Gene Products
Total GOA annotations 181284 26243
Total Electronic GO annotation 124386 24775
Total Manual GO annotations 56898 10083
Manual GO annotation by UniProt (EBI Curators) 1656 297
Manual GO annotation by UniProt (SIB Curators) 3722 720
Manual GO annotation by UniProt (PIR Curators) 12 5
Total number of Pubmed references 51008
Number of distinct Pubmed references 1070
Electronic GO annotation using InterPro to GO mapping 26301 13660
Electronic GO annotation using Swiss-Prot keyword to GO mapping 11441 8967
Electronic GO annotation using UniProt Subcellular Location to GO mapping 2610 2179
Electronic GO annotation using EC to GO mapping 903 719
Electronic GO annotation using projections based on Ensembl orthologs 68879 8566
Electronic GO annotation using UniPathway to GO mapping 369 348
Electronic GO annotation using UniRule to GO mapping 2860 1878
Electronic GO annotation using RNAcentral Rfam to GO mapping 2966 1494
Logical inferences based on GOC rules and annotations from electronic sources 5833 4111
Manual GO annotation by AgBase 5457 823
Manual GO annotation by MGI 27 19
Manual GO annotation by BHF-UCL 124 42
Manual GO annotation by HGNC 38 10
Manual GO annotation by Roslin Institute 23 10
Manual GO annotation by Reactome 416 117
Manual GO annotation by IntAct 213 100
Manual GO annotation by DFLAT 15 8
Manual GO annotation by RefGenome 45004 9283
Manual GO annotation by CACAO 8 8
Manual GO annotation by UniProt for Automated Function Prediction SIG 71 19
Manual GO annotation by ParkinsonsUK-UCL 20 10
Manual GO annotation by GO_Central 1 1
Manual GO annotation by SynGO 1 1
Manual GO annotation by Complex Portal 66 19
Manual GO annotation by SynGO (via Noctua) 24 8
Logical inferences based on GOC rules and annotations from manual sources 2224 1850
Logical inferences based on GOC rules and annotations from manual and electronic sources 8057 5023