Current Composition of Chicken UniProt-GOA

Current Composition of Chicken GOA



The following table describes the latest version of GOA Chicken (version 156), released on 05 December, 2018 and assembled using the publicly released data available in the source databases on 01 December, 2018.


GO Annotation Source Number of Associations Number of Distinct Gene Products
Total GOA annotations 176015 26292
Total Electronic GO annotation 117821 24451
Total Manual GO annotations 58194 10259
Manual GO annotation by UniProt (EBI Curators) 1654 297
Manual GO annotation by UniProt (SIB Curators) 3802 733
Manual GO annotation by UniProt (PIR Curators) 12 5
Total number of Pubmed references 52226
Number of distinct Pubmed references 1070
Electronic GO annotation using InterPro to GO mapping 26261 13695
Electronic GO annotation using Swiss-Prot keyword to GO mapping 11505 9020
Electronic GO annotation using UniProt Subcellular Location to GO mapping 2652 2202
Electronic GO annotation using EC to GO mapping 943 758
Electronic GO annotation using projections based on Ensembl orthologs 62160 7476
Electronic GO annotation using UniPathway to GO mapping 372 352
Electronic GO annotation using UniRule to GO mapping 2830 1839
Electronic GO annotation using RNAcentral Rfam to GO mapping 2966 1494
Logical inferences based on GOC rules and annotations from electronic sources 5770 4078
Manual GO annotation by AgBase 5455 823
Manual GO annotation by MGI 27 19
Manual GO annotation by BHF-UCL 124 42
Manual GO annotation by HGNC 38 10
Manual GO annotation by Roslin Institute 23 10
Manual GO annotation by Reactome 416 117
Manual GO annotation by IntAct 213 100
Manual GO annotation by DFLAT 15 8
Manual GO annotation by RefGenome 46224 9470
Manual GO annotation by CACAO 8 8
Manual GO annotation by UniProt for Automated Function Prediction SIG 71 19
Manual GO annotation by ParkinsonsUK-UCL 20 10
Manual GO annotation by GO_Central 1 1
Manual GO annotation by SynGO 1 1
Manual GO annotation by Complex Portal 66 19
Manual GO annotation by SynGO (via Noctua) 24 8
Logical inferences based on GOC rules and annotations from manual sources 2362 1962
Logical inferences based on GOC rules and annotations from manual and electronic sources 8132 5128