Ligand clusters for UniProt code P00509

Ligand clusters for P00509: Aspartate aminotransferase OS=Escherichia coli (strain K12) OX=83333 GN=aspC PE=1 SV=1

		Top 6 (of 30) ligand clusters Cluster 1. 34 ligand types 120 ligands Cluster 2. 12 ligand types 26 ligands Cluster 3. 3 ligand types 16 ligands Cluster 4. 3 ligand types 12 ligands Cluster 5. 3 ligand types 26 ligands Cluster 6. 2 ligand types 7 ligands
Representative protein: 4f5mA

Structures

PDB		Schematic diagram
4f5mA
4f5lA
1aamA
1ahfA
1ahgA
		more ...

Cluster 1 contains 34 ligand types (of which only 20 are listed. Click for all)

Use checkboxes to select ligands to display in RasMol, Jmol, or download as an SDF file. Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: AKG × 1 2-Oxoglutaric acid PDB code: 1aib(A).
		2. Ligand: PLP × 35 pyridoxal phosphate Pyridoxal-5'-Phosphate PDB codes: 1aam(A), 1aaw(A), 1ahe(A), 1ahf(A), 1ahx(A), 1ahy(A), 1ari(A), 1ars(A), 1asa(A), 1asb(A), 1asf(A), 1asg(A), 1asm(A), 1asn(A), 1b4x(A), 1czc(A), 1cze(A), 1g4v(A), 1g4x(A), 1g7w(A), 1g7x(A), 1ix6(A), 1ix7(A), 1ix8(A), 1qir(A), 1qis(A), 1qit(A), 1yoo(A), 2d5y(A), 2d61(A), 2d63(A), 2d7y(A), 3aat(A), 3zzj(A), 5eaa(A).
		3. Ligand: GOL × 3 glycerin Glycerol PDB codes: 2q7w(A), 2qa3(A), 2qbt(A).
		4. Ligand: SIN × 1 succinic acid Succinic acid PDB code: 1cze(A).
		5. Ligand: HCI × 4 Hydrocinnamic acid PDB codes: 1ahx(A), 1tog(A), 1toi(A), 1toj(A).
		6. Ligand: GUA × 2 Glutaric acid PDB codes: 1ams(A), 1czc(A).
		7. Ligand: IOP × 1 Indolylpropionic acid PDB code: 1ahf(A).
		8. Ligand: IVA × 3 Isovaleric acid PDB codes: 1yoo(A), 2d5y(A), 2d63(A).
		9. Ligand: PDG × 1 N-({3-Hydroxy-2-Methyl-5-[(Phosphonooxy)methyl]pyridin- 4-Yl}methyl)-D-Glutamic acid PDB code: 1x2a(A).
		10. Ligand: PGU × 1 N-({3-Hydroxy-2-Methyl-5-[(Phosphonooxy)methyl]pyridin- 4-Yl}methyl)-L-Glutamic acid PDB code: 1x28(A).
		11. Ligand: PPD × 2 2-[(3-Hydroxy-2-Methyl-5-Phosphonooxymethyl-Pyridin-4- Ylmethylene)-Amino]-Succinic acid PDB codes: 1arg(A), 1arh(A).
		12. Ligand: PMG × 1 N-({3-Hydroxy-2-Methyl-5-[(Phosphonooxy)methyl]pyridin- 4-Yl}methyl)-2-Methyl-L-Glutamic acid PDB code: 1x29(A).
		13. Ligand: MAE × 16 Maleic acid PDB codes: 1ahy(A), 1amr(A), 1ari(A), 1asa(A), 1asb(A), 1asd(A), 1ase(A), 1asg(A), 1asm(A), 1b4x(A), 1ix7(A), 1qir(A), 1qis(A), 1qit(A), 1tok(A), 2d61(A).
		14. Ligand: SO4 × 8 Sulfate ion PDB codes: 1aam(A), 1ahe(A), 1aic(A), 1asf(A), 1asn(A), 1toe(A), 2aat(A), 3aat(A).
		15. Ligand: PLA × 1 2-[(3-Hydroxy-2-Methyl-5-Phosphonooxymethyl-Pyridin-4- Ylmethyl)-Amino]-2-Methyl-Succinic acid PDB code: 1asl(A).
		16. Ligand: PY5 × 1 2-[O-Phosphonopyridoxyl]-Amino-Pentanoic acid PDB code: 1cq7(A).
		17. Ligand: PY6 × 1 2-[O-Phosphonopyridoxyl]-Amino-Hexanoic acid PDB code: 1cq8(A).
		18. Ligand: PY4 × 1 2-[O-Phosphonopyridoxyl]-Amino- Butyric acid PDB code: 1cq6(A).
		19. Ligand: PMP × 12 4'-Deoxy-4'-Aminopyridoxal-5'-Phosphate PDB codes: 1aia(A), 1aib(A), 1aic(A), 1amq(A), 1amr(A), 1ams(A), 2aat(A), 2q7w(A), 2qa3(A), 2qb2(A), 2qb3(A), 2qbt(A).
		20. Ligand: PP3 × 1 Alanyl-Pyridoxal-5'-Phosphate PDB code: 1c9c(A).
+ more. Press for full list

Cluster 2 contains 12 ligand types

Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: AKG × 1 2-Oxoglutaric acid PDB code: 1aib(A).
		2. Ligand: PLP × 7 pyridoxal phosphate Pyridoxal-5'-Phosphate PDB codes: 1ahe(A), 1ahf(A), 1ahx(A), 1ahy(A), 1ari(A), 1asm(A), 1asn(A).
		3. Ligand: HCI × 2 Hydrocinnamic acid PDB codes: 1ahx(A), 1tog(A).
		4. Ligand: PDG × 1 N-({3-Hydroxy-2-Methyl-5-[(Phosphonooxy)methyl]pyridin- 4-Yl}methyl)-D-Glutamic acid PDB code: 1x2a(A).
		5. Ligand: PGU × 1 N-({3-Hydroxy-2-Methyl-5-[(Phosphonooxy)methyl]pyridin- 4-Yl}methyl)-L-Glutamic acid PDB code: 1x28(A).
		6. Ligand: PPD × 2 2-[(3-Hydroxy-2-Methyl-5-Phosphonooxymethyl-Pyridin-4- Ylmethylene)-Amino]-Succinic acid PDB codes: 1arg(A), 1arh(A).
		7. Ligand: PMG × 1 N-({3-Hydroxy-2-Methyl-5-[(Phosphonooxy)methyl]pyridin- 4-Yl}methyl)-2-Methyl-L-Glutamic acid PDB code: 1x29(A).
		8. Ligand: MAE × 4 Maleic acid PDB codes: 1ahy(A), 1ari(A), 1asm(A), 1tok(A).
		9. Ligand: PLA × 1 2-[(3-Hydroxy-2-Methyl-5-Phosphonooxymethyl-Pyridin-4- Ylmethyl)-Amino]-2-Methyl-Succinic acid PDB code: 1asl(A).
		10. Ligand: SO4 × 1 Sulfate ion PDB code: 1aic(A).
		11. Ligand: PMP × 4 4'-Deoxy-4'-Aminopyridoxal-5'-Phosphate PDB codes: 1aia(A), 1aib(A), 1aic(A), 5vwq(A).
		12. Ligand: TYR-PLP × 1 PLP=Pyridoxal-5'-Phosphate. PDB code: 1ahg(A).

Cluster 3 contains 3 ligand types

Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: GOL × 9 glycerin Glycerol PDB codes: 2q7w(A), 2qb2(A), 2qbt(A), 3zzj(A), 3zzk(A), 5vwr(A).
		2. Ligand: SO4 × 6 Sulfate ion PDB codes: 2qa3(A), 2qb3(A), 2qbt(A), 3qn6(A), 3qpg(A), 4dbc(A).
		3. Ligand: PEG × 1 Di(hydroxyethyl)ether PDB code: 4a00(A).

Cluster 4 contains 3 ligand types

Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: GOL × 4 glycerin Glycerol PDB codes: 2q7w(A), 3zzk(A), 4a00(A), 5vwr(A).
		2. Ligand: SO4 × 7 Sulfate ion PDB codes: 2qa3(A), 2qb2(A), 2qb3(A), 2qbt(A), 3qn6(A), 3qpg(A), 4dbc(A).
		3. Ligand: PEG × 1 Di(hydroxyethyl)ether PDB code: 3zzj(A).

Cluster 5 contains 3 ligand types

Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: GOL × 15 glycerin Glycerol PDB codes: 2q7w(A), 2qa3(A), 2qb2(A), 2qb3(A), 2qbt(A), 4a00(A), 5vwr(A).
		2. Ligand: SO4 × 9 Sulfate ion PDB codes: 2qa3(A), 2qb2(A), 2qbt(A), 3qn6(A), 3qpg(A), 3zzj(A), 3zzk(A), 4dbc(A).
		3. Ligand: EDO × 2 1,2-Ethanediol PDB codes: 3qn6(A), 4f5l(A).

Cluster 6 contains 2 ligand types

Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: GOL × 6 glycerin Glycerol PDB codes: 2qa3(A), 2qb2(A), 2qb3(A), 2qbt(A), 3zzj(A), 3zzk(A).
		2. Ligand: PEG × 1 Di(hydroxyethyl)ether PDB code: 4a00(A).