Structure Databases

The EBI has a developed and maintained a number of protein structure related databases. The Protein Databank in Europe (PDBe) group, within the EBI, is responsible for the deposition and validation of new protein structures.

The following are links to the various protein structure associated databases available and developed by the EBI.

Database	Description
CSA	The Catalytic Site Atlas (CSA) is a resource of catalytic sites and residues identified in enzymes using structural data.
DSSP	The DSSP database is a database of secondary structure assignments (and much more) for all of the entries in the Protein Data Bank (PDB).
FSSP	Fold classification based on structure-structure assignments.
HSSP	HSSP (homology-derived structures of proteins) is a derived database merging structural (2-D and 3-D) and sequence information (1-D).
MSDchem	The ligand library, a complete chemical description of all the distinct chemical components found within the PDB.
MSDlite	Provides easy access to the PDB.
PDBe	The Protein Databank in Europe (PDBe). This includes PDBe search tools
PDBsum	PDBsum is a pictorial database providing an at-a-glance overview of every macromolecular structure deposited in the Protein Data Bank (PDB).
ProFunc	The ProFunc server had been developed to help identify the likely biochemical function of a protein from its three-dimensional structure.
RESID	The RESID Database of Protein Modifications is a comprehensive collection of annotations and structures for protein modifications including amino-terminal, carboxyl-terminal and peptide chain cross-link post-translational modifications.

PDBe

The Protein Databank in Europe Database is a European project for the collection, management and distribution of data about macromolecular structures... more

CSA

The Catalytic Site Atlas is a resource of catalytic sites and residues identified in enzymes using structural data... more

Please Note

The Macromolecular Structure Database (MSD) group has moved to http://www.ebi.ac.uk/pdbe/ and changed its name to the Protein Databank in Europe (PDBe) as of Jan 2009.