Ligand clusters for UniProt code O26232

Ligand clusters for O26232: Orotidine 5'-phosphate decarboxylase OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=pyrF PE=1 SV=1

		Top 6 (of 18) ligand clusters Cluster 1. 27 ligand types 109 ligands Cluster 2. 19 ligand types 87 ligands Cluster 3. 3 ligand types 15 ligands Cluster 4. 2 ligand types 5 ligands Cluster 5. 3 ligand types 31 ligands Cluster 6. 2 ligand types 6 ligands
Representative protein: 1dvjA

Structures

PDB		Schematic diagram
1dvjA
2zz4A
3w07A
2zz6A
3wk0A
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Cluster 1 contains 27 ligand types (of which only 20 are listed. Click for all)

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Ligand		Description
		1. Ligand: U5P × 1 Uridine-5'-Monophosphate PDB code: 2e6y(A).
		2. Ligand: OMP × 1 Orotidine-5'-Monophosphate PDB code: 1km6(A).
		3. Ligand: BMP × 2 6-Hydroxyuridine-5'-Phosphate PDB codes: 1lor(A), 1x1z(A).
		4. Ligand: UP6 × 11 6-Aza uridine 5'-Monophosphate PDB codes: 1dvj(A), 1kly(A), 1km0(A), 1km1(A), 1km2(A), 1km3(A), 1km5(A), 1los(A),
		5. Ligand: C5P × 1 Cytidine-5'-Monophosphate PDB code: 1lp6(A).
		6. Ligand: XMP × 1 Xanthosine-5'-Monophosphate PDB code: 1lol(A).
		7. Ligand: BU2 × 1 1,3-Butanediol PDB code: 1lol(A).
		8. Ligand: BMP × 38 6-Hydroxyuridine-5'-Phosphate PDB codes: 2zz1(A), 2zz7(A), 3ltp(A), 3lts(A), 3lty(A), 3lv5(A), 3lv6(A), 3m1z(A), 3nq7(A), 3nqa(A), 3nqc(A), 3nqd(A), 3nqe(A), 3nqf(A), 3nqg(A), 3nqm(A), 3p5y(A), 3p5z(A), 3p60(A), 3p61(A), 3qez(A), 3qf0(A), 3qmr(A), 3qms(A), 3qmt(A), 3rlu(A), 3rlv(A), 3siz(A), 3sj3(A), 3v1p(A), 4fx6(M), 4fx8(A), 4fxr(A), 4gc4(A), 4lc6(A), 4lc8(A), 4lw7(A), 4o11(A).
		9. Ligand: UP6 × 12 6-Aza uridine 5'-Monophosphate PDB codes: 3g1a(A), 3g24(A), 3lld(A), 3llf(A), 3nq6(A), 3pbu(A), 3pbv(A), 3pbw(A), 3pby(A), 3pc0(A), 3sy5(A), 4nx5(A).
		10. Ligand: BMQ × 8 1-(5'-Phospho-Beta-D-Ribofuranosyl)barbituric acid PDB codes: 3lht(A), 3lhu(A), 3lhv(A), 3lhw(A), 3lhy(A), 3lhz(A), 3li0(A), 3li1(A).
		11. Ligand: 6CN × 5 6-Cyanouridine 5'-Phosphate PDB codes: 2zz1(A), 2zz2(A), 2zz3(A), 2zz4(A), 2zz5(A).
		12. Ligand: NUP × 4 6-Aminouridine 5'-Monophosphate PDB codes: 3thq(A), 3wjx(A), 3wjy(A), 3wjz(A).
		13. Ligand: 5FU × 3 5-Fluoro-Uridine-5'-Monophosphate PDB codes: 3g1v(A), 3sgu(A), 3sw6(A).
		14. Ligand: U5P × 2 Uridine-5'-Monophosphate PDB codes: 3w07(A), 4nuw(A).
		15. Ligand: GOL × 2 Glycerol PDB codes: 3m43(A), 3m47(A).
		16. Ligand: H2U × 2 5,6-Dihydrouridine-5'-Monophosphate PDB codes: 3g1h(A), 4o8r(A).
		17. Ligand: O7E × 2 6-(Ethoxycarbonyl)uridine 5'-(Dihydrogen phosphate) PDB codes: 3wk1(A), 3wk3(A).
		18. Ligand: O7M × 2 6-(Methoxycarbonyl)uridine 5'-(Dihydrogen phosphate) PDB codes: 3wk0(A), 3wk2(A).
		19. Ligand: SO4 × 2 Sulfate ion PDB codes: 3g1y(A), 3m5z(A).
_Cl		20. Metal: _CL × 2 PDB codes: 1km5(A), 3g1v(A).
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Cluster 2 contains 19 ligand types

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Ligand		Description
		1. Ligand: U5P × 1 Uridine-5'-Monophosphate PDB code: 2e6y(A).
		2. Ligand: BMP × 1 6-Hydroxyuridine-5'-Phosphate PDB code: 1x1z(A).
		3. Ligand: UP6 × 5 6-Aza uridine 5'-Monophosphate PDB codes: 1km0(A), 1km1(A), 1los(A),
		4. Ligand: C5P × 1 Cytidine-5'-Monophosphate PDB code: 1lp6(A).
		5. Ligand: XMP × 1 Xanthosine-5'-Monophosphate PDB code: 1lol(A).
		6. Ligand: BMP × 37 6-Hydroxyuridine-5'-Phosphate PDB codes: 2zz1(A), 3ltp(A), 3lts(A), 3lty(A), 3lv5(A), 3lv6(A), 3m1z(A), 3nq7(A), 3nqa(A), 3nqc(A), 3nqd(A), 3nqe(A), 3nqf(A), 3nqg(A), 3nqm(A), 3p5y(A), 3p5z(A), 3p60(A), 3p61(A), 3qez(A), 3qf0(A), 3qmr(A), 3qms(A), 3qmt(A), 3rlu(A), 3rlv(A), 3siz(A), 3sj3(A), 3v1p(A), 4fx6(M), 4fx8(A), 4fxr(A), 4gc4(A), 4lc6(A), 4lc8(A), 4lw7(A), 4o11(A).
		7. Ligand: UP6 × 12 6-Aza uridine 5'-Monophosphate PDB codes: 3g1a(A), 3g24(A), 3lld(A), 3llf(A), 3nq6(A), 3pbu(A), 3pbv(A), 3pbw(A), 3pby(A), 3pc0(A), 3sy5(A), 4nx5(A).
		8. Ligand: BMQ × 8 1-(5'-Phospho-Beta-D-Ribofuranosyl)barbituric acid PDB codes: 3lht(A), 3lhu(A), 3lhv(A), 3lhw(A), 3lhy(A), 3lhz(A), 3li0(A), 3li1(A).
		9. Ligand: 6CN × 5 6-Cyanouridine 5'-Phosphate PDB codes: 2zz1(A), 2zz2(A), 2zz3(A), 2zz4(A), 2zz5(A).
		10. Ligand: GOL × 3 Glycerol PDB codes: 3m43(A), 3m44(A), 4fx6(M).
		11. Ligand: H2U × 3 5,6-Dihydrouridine-5'-Monophosphate PDB codes: 3g1h(A), 4o8r(A),
_Cl		12. Metal: _CL × 3 PDB codes: 4lc8(A), 4nx5(A), 4o11(A).
		13. Ligand: U5P × 1 Uridine-5'-Monophosphate PDB code: 4nuw(A).
		14. Ligand: 2OM × 1 5,6-Dihydroorotidine 5'-Monophosphate PDB code: 3g1f(A).
		15. Ligand: 3DU × 1 4-Hydroxy-1-(5-O-Phosphono-Beta-D-Ribofuranosyl) pyridin-2(1h)-One PDB code: 4nt0(A).
		16. Ligand: 5FU × 1 5-Fluoro-Uridine-5'-Monophosphate PDB code: 3g1v(A).
		17. Ligand: 6AZ × 1 6-Azidouridine 5'-(Dihydrogen phosphate) PDB code: 2zz6(A).
		18. Ligand: NUP × 1 6-Aminouridine 5'-Monophosphate PDB code: 3thq(A).
		19. Ligand: SO4 × 1 Sulfate ion PDB code: 3g1y(A).

Cluster 3 contains 3 ligand types

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Ligand		Description
		1. Ligand: GOL × 13 Glycerol PDB codes: 1x1z(A), 2e6y(A), 2zz1(A), 2zz2(A), 2zz3(A), 2zz6(A), 2zz7(A), 3wjx(A), 3wjz(A), 3wk0(A), 3wk1(A), 3wk2(A), 3wk3(A).
		2. Ligand: EDO × 1 1,2-Ethanediol PDB code: 4o11(A).
		3. Ligand: POL × 1 N-Propanol PDB code: 3p5z(A).

Cluster 4 contains 2 ligand types

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Ligand		Description
		1. Ligand: GOL × 4 Glycerol PDB codes: 3m41(A), 3qf0(A), 3rlv(A), 4fx6(M).
		2. Ligand: PEG × 1 Di(hydroxyethyl)ether PDB code: 4nt0(A).

Cluster 5 contains 3 ligand types

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Ligand		Description
		1. Ligand: GOL × 29 Glycerol PDB codes: 1x1z(A), 2e6y(A), 2zz1(A), 2zz2(A), 2zz3(A), 2zz6(A), 2zz7(A), 3nq6(A), 3nqe(A), 3nqf(A), 3nqg(A), 3nqm(A), 3p5z(A), 3pbv(A), 3pby(A), 3qez(A), 3qmt(A), 3sec(A), 3w07(A), 3wjx(A), 3wjy(A), 3wjz(A), 3wk0(A), 3wk1(A), 3wk2(A), 3wk3(A), 4nuw(A), 4o11(A).
		2. Ligand: EDO × 1 1,2-Ethanediol PDB code: 4o11(A).
_Cl		3. Metal: _CL × 1 PDB code: 4o8r(A).

Cluster 6 contains 2 ligand types

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Ligand		Description
		1. Ligand: GOL × 5 Glycerol PDB codes: 3m41(A), 3m47(A), 3p5y(A), 3p5z(A),
		2. Ligand: SO4 × 1 Sulfate ion PDB code: 4fx8(A).