EMD-64924

Single-particle
3.31 Å
EMD-64924
3D View Gallery
Deposition: 04/06/2025
Map released: 24/12/2025
Last modified: 14/01/2026
Overview 3D View Sample Experiment Validation Additional data Links
Overview 3D View Sample Experiment Validation Additional data Links

EMD-64924

Archive Files (Depositor)

Primary 3D volume (map.gz) Half-map 1 Half-map 2 (map.gz) Experimental metadata (xml) Experimental metadata (cif.gz)

Validation (wwPDB)

Map-only validation report (pdf.gz) Map-9vbj summary report (pdf.gz) Map-9vbj FULL report (pdf.gz)

EMDB Annotations

EMICSS entry mapping (xml)

EMDB Files

VA raw map (map) VA resolution mask (mrc)

Cryo-EM structure of human PLD4 apo form

EMD-64924

Single-particle
3.31 Å
EMD-64924
3D View Gallery
Deposition: 04/06/2025
Map released: 24/12/2025
Last modified: 14/01/2026
Overview 3D View Sample Experiment Validation Additional data Links
Sample Organism: Homo sapiens
Sample: Homo-tetramer of PLD4 luminal domain
Fitted models: 9vbj

Deposition Authors: Hirano Y , Ezaki W, Ohto U, Shimizu T
Mechanistic insights into single-stranded DNA degradation by lysosomal exonucleases PLD3 and PLD4 from structural snapshots.
Hirano Y , Ezaki W, Sato R, Ohto U, Miyake K, Shimizu T
(2025) Nat Commun , 16 , 11431 - 11431
PUBMED: 41381514
DOI: doi:10.1038/s41467-025-66261-2
ISSN: 2041-1723