EMD-46547

Single-particle
2.8 Å
EMD-46547
3D View Gallery
Deposition: 11/08/2024
Map released: 13/08/2025
Last modified: 15/10/2025
Overview 3D View Sample Experiment Validation Additional data Links
Overview 3D View Sample Experiment Validation Additional data Links

EMD-46547

Archive Files (Depositor)

Primary 3D volume (map.gz) Half-map 1 Half-map 2 (map.gz) Experimental metadata (xml) Experimental metadata (cif.gz)

Validation (wwPDB)

Map-only validation report (pdf.gz) Map-9d3t summary report (pdf.gz) Map-9d3t FULL report (pdf.gz)

EMDB Annotations

EMICSS entry mapping (xml)

EMDB Files

VA raw map (map) VA resolution mask (mrc)

147-bp 5S rDNA nucleosome cross-linked with glutaraldehyde

EMD-46547

Single-particle
2.8 Å
EMD-46547
3D View Gallery
Deposition: 11/08/2024
Map released: 13/08/2025
Last modified: 15/10/2025
Overview 3D View Sample Experiment Validation Additional data Links
Sample Organism: Homo sapiens, Xenopus borealis
Sample: Mono-nucleosome assembled with Xenopus borealis 5S rDNA and human histones, cross-linked with glutaraldehyde
Fitted models: 9d3t

Deposition Authors: Alegrio Louro J , Cruz-Becerra G, Kadonaga JT , Leschziner AE
Structural basis of nucleosome recognition by the conserved Dsup and HMGN nucleosome-binding motif.
Alegrio-Louro J, Cruz-Becerra G, Kassavetis GA, Kadonaga JT , Leschziner AE
(2025) Genes Dev , 39 , 1155 - 1161
PUBMED: 40721296
DOI: doi:10.1101/gad.352720.125
ISSN: 0890-9369
ASTM: GEDEEP