EMD-39577

Single-particle
2.25 Å
EMD-39577
3D View Gallery
Deposition: 27/03/2024
Map released: 06/11/2024
Last modified: 01/07/2026
Overview 3D View Sample Experiment Validation Additional data Links
Overview 3D View Sample Experiment Validation Additional data Links

EMD-39577

Archive Files (Depositor)

Primary 3D volume (map.gz) Half-map 1 Half-map 2 (map.gz) Experimental metadata (xml) Experimental metadata (cif.gz)

Validation (wwPDB)

Map-only validation report (pdf.gz) Map-8yuo summary report (pdf.gz) Map-8yuo FULL report (pdf.gz)

EMDB Annotations

EMICSS entry mapping (xml)

EMDB Files

VA raw map (map) VA resolution mask (mrc)

E. coli 70S ribosome complexed with P. putida tRNAIle2 at the A-site and P-site

EMD-39577

Single-particle
2.25 Å
EMD-39577
3D View Gallery
Deposition: 27/03/2024
Map released: 06/11/2024
Last modified: 01/07/2026
Overview 3D View Sample Experiment Validation Additional data Links
Sample Organism: Escherichia coli, Pseudomonas putida NBRC 14164
Sample: The complex of E. coli 70S ribosome with mRNA and A-, P- site tRNA
Fitted models: 8yuo

Deposition Authors: Akiyama N , Ishiguro K , Shirouzu M , Suzuki T
A tRNA modification with aminovaleramide facilitates AUA decoding in protein synthesis.
Miyauchi K , Kimura S , Akiyama N , Inoue K, Ishiguro K , Vu TS, Srisuknimit V , Koyama K, Hayashi G , Soma A, Nagao A, Shirouzu M , Okamoto A , Waldor MK , Suzuki T
(2025) Nat Chem Biol , 21 , 522 - 531
PUBMED: 39300229
DOI: doi:10.1038/s41589-024-01726-x
ISSN: 1552-4469