Electron Microscopy Data Bank

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update_date:"2026-2-18T00:00:00Z" AND database:EMDB

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Current Database

Current status

Sample type

Organism

Homo sapiens [264]
Mus musculus [72]
Synthetic construct [45]
Saccharomyces cerevisiae [32]
Rattus norvegicus [24]
Chlamydomonas reinhardtii [22]
Streptococcus thermophilus [19]
Escherichia coli [12]
Clostridium perfringens [11]
Selenomonas sp. [10]
Saccharomyces cerevisiae [9]
Bos taurus [9]
Prevotella copri [8]
Human immunodeficiency virus 1 [7]
Mycolicibacterium smegmatis [7]
Archangium gephyra [7]
Sus scrofa [7]
Staphylococcus aureus [6]
Human coronavirus 229e [5]
Corynebacterium glutamicum [5]
Pectobacterium atrosepticum [5]
Thermus virus p74-26 [5]
Xenopus laevis [5]
Lama glama [5]
Influenza a virus [4]
Nonlabens marinus [4]
Enterobacteria phage t4 [4]
Vicugna pacos [4]
Azotobacter vinelandii [4]
Acinetobacter baumannii [4]
Apis mellifera [4]
Escherichia coli [4]
Dabie bandavirus [3]
Heterocephalus glaber [3]
Nostoc sp. (strain pcc 7120 / sag 25.82 / utex 2576) [3]
Synechococcus elongatus [3]
Streptococcus sanguinis [3]
Mycoplasma genitalium [3]
Synechococcus elongatus [3]
Escherichia coli [3]
Thiocystis violascens [3]
Dorea longicatena [3]
Macaca mulatta [3]
(no species) [2]
Foot-and-mouth disease virus [2]
Mamastrovirus 1 [2]
Lactococcus lactis [2]
Mycolicibacterium smegmatis [2]
Metagenome [2]
Escherichia phage lambda [2]
(no species) [2]
Marchantia polymorpha [2]
Arabidopsis thaliana [2]
Escherichia coli [2]
Escherichia coli [2]
Danio rerio [2]
(no species) [2]
(no species) [1]
Cavia porcellus [1]
Epstein-barr virus (strain gd1) [1]
Protobothrops mucrosquamatus [1]
Tequatrovirus t6 [1]
Rhodospirillum rubrum [1]
Kwaitsingvirus hk446 [1]
Simian immunodeficiency virus [1]
Enterovirus c [1]
Roseiflexus castenholzii [1]
(no species) [1]
Rhadinovirus muridgamma4 [1]
Streptococcus pyogenes [1]
Oceanobacillus iheyensis [1]
Sudan ebolavirus [1]
Bacillus paranthracis [1]
Nitrospirota bacterium [1]
Tissierellia bacterium [1]
Neisseria gonorrhoeae [1]
Pseudomonas phage vb_pa32_gums [1]
Clostridium perfringenosum [1]
Euglena gracilis [1]
Acanthamoeba royreba [1]
Rhadinovirus muridgamma4 [1]
Foot-and-mouth disease virus [1]
Svunavirus gbsv1 [1]
Orthoebolavirus sudanense [1]
Camelus ferus [1]
Legionella pneumophila [1]
Lymphocryptovirus macacinegamma4 [1]
Orthohepadnavirus hominoidei [1]
Toxoplasma gondii [1]
Pyrococcus horikoshii [1]
Saccharomyces cerevisiae [1]
(no species) [1]
Caenorhabditis elegans [1]
Citrobacter rodentium [1]
Escherichia coli [1]
Thiocystis violascens [1]
Escherichia coli [1]
Gallus gallus [1]
Salmonella enterica [1]
Oryctolagus cuniculus [1]

EM Method

Resolution

Release Date

Author by name

Yu J [59]
Ge JP [54]
Xu RS [54]
Wang X [35]
Zhang Z [31]
Liu Y [30]
Liu M [25]
Xie X [25]
Zhang Y [25]
Zhou XE [25]
Li S [22]
Wang S [22]
Wu C [22]
Braitbard M [21]
Cao S [21]
Engel BD [21]
Fan E [21]
Hinds TR [21]
Huang L [21]
Jiao F [21]
Kater L [21]
Lehner PA [21]
Liu Z [21]
Mao H [21]
Pfeffer S [21]
Schneidman-duhovny D [21]
Shi H [21]
Shor B [21]
Van Der Stappen P [21]
Waltz F [21]
Yu C [21]
Zheng N [21]
Wang L [20]
Gaizauskaite U [19]
Li D [19]
Sasnauskas G [19]
Tamulaitiene G [19]
Barrientos A [17]
Brischigliaro M [17]
Jones PA [17]
Liu J [17]
Worden EJ [17]
Xiong Y [17]
Zheng W [17]
Kim J [16]
Zhang J [16]
Gangwar SP [15]
Li CL [15]
Newton TP [15]
Sobolevsky AI [15]
Wang Z [15]
Yang W [15]
Yelshanskaya MV [15]
Yen LY [15]
Zhang W [15]
Chen S [14]
Li Y [14]
Zhang X [14]
Ang LC [13]
Castellani R [13]
Das S [13]
De Coster W [13]
Fukuda Y [13]
Ghetti B [13]
Herms J [13]
Inoue T [13]
Joseph JT [13]
Lashley T [13]
Mackenzie IRA [13]
Murzin AG [13]
Neumann M [13]
Newell K [13]
Rademakers R [13]
Roeber S [13]
Ryskeldi-falcon B [13]
Shobu K [13]
Singal B [13]
Synofzik M [13]
Takai M [13]
Tetter S [13]
Van Den Broeck M [13]
Varghese NR [13]
Al-bassam J [12]
Al-bassam J [12]
Guo F [12]
Li J [12]
Taheri A [12]
Wang H [12]
Zhang Q [12]
Bayly-jones C [11]
Chang YG [11]
Dong S [11]
Ellisdon AM [11]
Formosa LE [11]
Frescher NJ [11]
Halls ML [11]
Jones GD [11]
Keen AC [11]
Lam T [11]
Lim SS [11]

Journal

TO BE PUBLISHED [224]
NAT COMMUN [106]
BIORXIV [55]
NATURE [39]
NUCLEIC ACIDS RES [20]
CELL [15]
PNAS [15]
MOL CELL [14]
SCI ADV [13]
ACTA CRYSTALLOGR D STRUCT BIOL [9]
COMMUN BIOL [9]
NAT STRUCT MOL BIOL [8]
NAT CHEM BIOL [6]
CELL DISCOV [5]
CELL REP [5]
J MOL BIOL [5]
J BIOL CHEM [4]
NAT MICROBIOL [4]
NEURON [4]
J MED CHEM [3]
PLOS ONE [3]
RES SQ [3]
VITA [3]
ACTA PHARM SIN B [2]
ACTA PHARMACOL.SIN. [2]
ADV SCI [2]
BIOCHIM BIOPHYS ACTA BIOENERG [2]
ELIFE [2]
PLOS PATHOG [2]
PROTEIN SCI [2]
ACS CHEM BIOL [1]
ACTA CRYSTALLOGR D STRUCT BIOL . [1]
ADV MATER [1]
BIOCHEM J [1]
BLOOD [1]
COMMUN CHEM [1]
GUT [1]
J AM CHEM SOC [1]
LIFE SCI ALLIANCE [1]
MOL CELLS [1]
NAT METHODS [1]
NAT PLANTS [1]
ORG.BIOMOL.CHEM. [1]
PROTEINS [1]
RNA [1]
SCI REP [1]
SCIENCE [1]
STRUCTURE [1]

Software

Microscope

Electron Source

Film or detector model

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Showing 1 - 10 of 589. Page 1 of 59

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EMDB [589]

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EMD-47349

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3D View

The consensus model of the cryo-EM structure of human DNMT3A2-DNMT3B3 complex bound to di-nucleosome

Release date: Feb. 18, 2026
Resolution: 8.0 Å
EM Method: Single-particle
Fitted PDBs: 9e05

Xie X, Liu M, Zhou XE, Worden EJ, Jones PA

To Be Published

EMD-47353

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Cryo-EM structure a single nucleosome 2 focus of human DNMT3A2-DNMT3B3 complex bound to di-nucleosome

Release date: Feb. 18, 2026
Resolution: 3.72 Å
EM Method: Single-particle
Fitted PDBs: 9e09

Xie X, Liu M, Zhou XE, Worden EJ, Jones PA

To Be Published

EMD-47354

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3D View

A focus of DNMT tetramer 1 of the cryo-EM structure of human DNMT3A2-DNMT3B3 complex bound to di-nucleosome

Release date: Feb. 18, 2026
Resolution: 3.46 Å
EM Method: Single-particle
Fitted PDBs: 9e0f

Xie X, Liu M, Zhou XE, Worden EJ, Jones PA

To Be Published

EMD-47355

Download Map

3D View

A focus of tetramer 2 of the cryo-EM structure of human DNMT3A2-DNMT3B3 complex bound to di-nucleosome

Release date: Feb. 18, 2026
Resolution: 3.72 Å
EM Method: Single-particle
Fitted PDBs: 9e0g

Xie X, Liu M, Zhou XE, Worden EJ, Jones PA

To Be Published

EMD-47367

Download Map

3D View

Cryo-EM structure of a single nucleosome 1 focus of human DNMT3A2-DNMT3B3 complex bound to di-nucleosome

Release date: Feb. 18, 2026
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 9e0r

Xie X, Liu M, Zhou XE, Worden EJ, Jones PA

To Be Published

EMD-47448

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3D View

Cryo-EM structure of human DNMT3A2-DNMT3B3 complex bound to a di-nucleosome with a five base pair linker

Release date: Feb. 18, 2026
Resolution: 6.08 Å
EM Method: Single-particle
Fitted PDBs: 9e2d

Xie X, Liu M, Zhou XE, Worden E, Jones P

To Be Published

EMD-47450

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3D View

Cryo-EM structure of a di-nucleosome with a five base pair linker

Release date: Feb. 18, 2026
Resolution: 5.9 Å
EM Method: Single-particle
Fitted PDBs: 9e2f

Xie X, Liu M, Zhou XE, Worden E, Jones P

To Be Published

EMD-47461

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3D View

Cryo-EM structure of DNMT 3A2/3B3 tetramer in complex with a di-nucleosome with a six base pair linker

Release date: Feb. 18, 2026
Resolution: 3.14 Å
EM Method: Single-particle
Fitted PDBs: 9e2q

Xie X, Liu M, Zhou XE, Worden E, Jones P

To Be Published

EMD-47462

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3D View

Cryo-EM structure of human DNMT3A2-DNMT3B3 complex bound to a di-nucleosome and an histone-3 peptide

Release date: Feb. 18, 2026
Resolution: 7.71 Å
EM Method: Single-particle
Fitted PDBs: 9e2r

Xie X, Liu M, Zhou XE, Worden E, Jones P

To Be Published

EMD-47479

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3D View

Cryo-EM structure of DNMT 3A2/3B3 tetramer in complex with a di-nucleosome with K120R mutant H2B

Release date: Feb. 18, 2026
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 9e3d

Xie X, Liu M, Zhou XE, Worden E, Jones P

To Be Published

Sort by: Download

Showing 1 - 10 of 589. Page 1 of 59

Display:

Statistics

Download

Select database:

EMDB [589]

Format:

Select the script type:

Shell (Unix-based) Batch (Windows-based)

Preview first 10

Download

Filter By

Current Database

Current status

Sample type

Organism

Homo sapiens [264]
Mus musculus [72]
Synthetic construct [45]
Saccharomyces cerevisiae [32]
Rattus norvegicus [24]
Chlamydomonas reinhardtii [22]
Streptococcus thermophilus [19]
Escherichia coli [12]
Clostridium perfringens [11]
Selenomonas sp. [10]
Saccharomyces cerevisiae [9]
Bos taurus [9]
Prevotella copri [8]
Human immunodeficiency virus 1 [7]
Mycolicibacterium smegmatis [7]
Archangium gephyra [7]
Sus scrofa [7]
Staphylococcus aureus [6]
Human coronavirus 229e [5]
Corynebacterium glutamicum [5]
Pectobacterium atrosepticum [5]
Thermus virus p74-26 [5]
Xenopus laevis [5]
Lama glama [5]
Influenza a virus [4]
Nonlabens marinus [4]
Enterobacteria phage t4 [4]
Vicugna pacos [4]
Azotobacter vinelandii [4]
Acinetobacter baumannii [4]
Apis mellifera [4]
Escherichia coli [4]
Dabie bandavirus [3]
Heterocephalus glaber [3]
Nostoc sp. (strain pcc 7120 / sag 25.82 / utex 2576) [3]
Synechococcus elongatus [3]
Streptococcus sanguinis [3]
Mycoplasma genitalium [3]
Synechococcus elongatus [3]
Escherichia coli [3]
Thiocystis violascens [3]
Dorea longicatena [3]
Macaca mulatta [3]
(no species) [2]
Foot-and-mouth disease virus [2]
Mamastrovirus 1 [2]
Lactococcus lactis [2]
Mycolicibacterium smegmatis [2]
Metagenome [2]
Escherichia phage lambda [2]
(no species) [2]
Marchantia polymorpha [2]
Arabidopsis thaliana [2]
Escherichia coli [2]
Escherichia coli [2]
Danio rerio [2]
(no species) [2]
(no species) [1]
Cavia porcellus [1]
Epstein-barr virus (strain gd1) [1]
Protobothrops mucrosquamatus [1]
Tequatrovirus t6 [1]
Rhodospirillum rubrum [1]
Kwaitsingvirus hk446 [1]
Simian immunodeficiency virus [1]
Enterovirus c [1]
Roseiflexus castenholzii [1]
(no species) [1]
Rhadinovirus muridgamma4 [1]
Streptococcus pyogenes [1]
Oceanobacillus iheyensis [1]
Sudan ebolavirus [1]
Bacillus paranthracis [1]
Nitrospirota bacterium [1]
Tissierellia bacterium [1]
Neisseria gonorrhoeae [1]
Pseudomonas phage vb_pa32_gums [1]
Clostridium perfringenosum [1]
Euglena gracilis [1]
Acanthamoeba royreba [1]
Rhadinovirus muridgamma4 [1]
Foot-and-mouth disease virus [1]
Svunavirus gbsv1 [1]
Orthoebolavirus sudanense [1]
Camelus ferus [1]
Legionella pneumophila [1]
Lymphocryptovirus macacinegamma4 [1]
Orthohepadnavirus hominoidei [1]
Toxoplasma gondii [1]
Pyrococcus horikoshii [1]
Saccharomyces cerevisiae [1]
(no species) [1]
Caenorhabditis elegans [1]
Citrobacter rodentium [1]
Escherichia coli [1]
Thiocystis violascens [1]
Escherichia coli [1]
Gallus gallus [1]
Salmonella enterica [1]
Oryctolagus cuniculus [1]

EM Method

Resolution

Release Date

Author by name

Yu J [59]
Ge JP [54]
Xu RS [54]
Wang X [35]
Zhang Z [31]
Liu Y [30]
Liu M [25]
Xie X [25]
Zhang Y [25]
Zhou XE [25]
Li S [22]
Wang S [22]
Wu C [22]
Braitbard M [21]
Cao S [21]
Engel BD [21]
Fan E [21]
Hinds TR [21]
Huang L [21]
Jiao F [21]
Kater L [21]
Lehner PA [21]
Liu Z [21]
Mao H [21]
Pfeffer S [21]
Schneidman-duhovny D [21]
Shi H [21]
Shor B [21]
Van Der Stappen P [21]
Waltz F [21]
Yu C [21]
Zheng N [21]
Wang L [20]
Gaizauskaite U [19]
Li D [19]
Sasnauskas G [19]
Tamulaitiene G [19]
Barrientos A [17]
Brischigliaro M [17]
Jones PA [17]
Liu J [17]
Worden EJ [17]
Xiong Y [17]
Zheng W [17]
Kim J [16]
Zhang J [16]
Gangwar SP [15]
Li CL [15]
Newton TP [15]
Sobolevsky AI [15]
Wang Z [15]
Yang W [15]
Yelshanskaya MV [15]
Yen LY [15]
Zhang W [15]
Chen S [14]
Li Y [14]
Zhang X [14]
Ang LC [13]
Castellani R [13]
Das S [13]
De Coster W [13]
Fukuda Y [13]
Ghetti B [13]
Herms J [13]
Inoue T [13]
Joseph JT [13]
Lashley T [13]
Mackenzie IRA [13]
Murzin AG [13]
Neumann M [13]
Newell K [13]
Rademakers R [13]
Roeber S [13]
Ryskeldi-falcon B [13]
Shobu K [13]
Singal B [13]
Synofzik M [13]
Takai M [13]
Tetter S [13]
Van Den Broeck M [13]
Varghese NR [13]
Al-bassam J [12]
Al-bassam J [12]
Guo F [12]
Li J [12]
Taheri A [12]
Wang H [12]
Zhang Q [12]
Bayly-jones C [11]
Chang YG [11]
Dong S [11]
Ellisdon AM [11]
Formosa LE [11]
Frescher NJ [11]
Halls ML [11]
Jones GD [11]
Keen AC [11]
Lam T [11]
Lim SS [11]

Journal

TO BE PUBLISHED [224]
NAT COMMUN [106]
BIORXIV [55]
NATURE [39]
NUCLEIC ACIDS RES [20]
CELL [15]
PNAS [15]
MOL CELL [14]
SCI ADV [13]
ACTA CRYSTALLOGR D STRUCT BIOL [9]
COMMUN BIOL [9]
NAT STRUCT MOL BIOL [8]
NAT CHEM BIOL [6]
CELL DISCOV [5]
CELL REP [5]
J MOL BIOL [5]
J BIOL CHEM [4]
NAT MICROBIOL [4]
NEURON [4]
J MED CHEM [3]
PLOS ONE [3]
RES SQ [3]
VITA [3]
ACTA PHARM SIN B [2]
ACTA PHARMACOL.SIN. [2]
ADV SCI [2]
BIOCHIM BIOPHYS ACTA BIOENERG [2]
ELIFE [2]
PLOS PATHOG [2]
PROTEIN SCI [2]
ACS CHEM BIOL [1]
ACTA CRYSTALLOGR D STRUCT BIOL . [1]
ADV MATER [1]
BIOCHEM J [1]
BLOOD [1]
COMMUN CHEM [1]
GUT [1]
J AM CHEM SOC [1]
LIFE SCI ALLIANCE [1]
MOL CELLS [1]
NAT METHODS [1]
NAT PLANTS [1]
ORG.BIOMOL.CHEM. [1]
PROTEINS [1]
RNA [1]
SCI REP [1]
SCIENCE [1]
STRUCTURE [1]

Software

Microscope

Electron Source

Film or detector model