EMD-52458 Validation analysis

EMD-52458 › Validation analysis

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In vitro grown K58N Alpha-Synuclein Fibrils

Validation summary

Resolution:

Method:

Map released:

Last modified:

Sample name:

3.7 Å (depositor provided) (FSC 0.143 CUT-OFF)

Single particle reconstruction

2025-02-12

Alpha-Synuclein K58N

Organism:

Fitted atomic model:

Homo sapiens

9hxa (2 chains, 846 atoms)

Model evaluation bars:

Model	Metric	Average value
9hxa	Q-score	0.488
	Atom Inclusion	0.67
	CCC	0.574
	SMOC	0.553

Additional validation information

Please find validation analyses used for peer review in the wwPDB validation reports for this entries map (EMD-52458) and model-map (9hxa and EMD-52458). Validation analysis of this entry is available in the main page. Documentation for the outputs of EMDB Validation Analysis can be found on the help page.

Map parameters

Recommended contour level:

Number of grid points:

Voxel size:

Minimum value:

Maximum value:

Average value:

Standard deviation:

0.01

384 × 384 × 384

0.920 × 0.920 × 0.920 Å

-0.043

0.049

0.000

0.002

Primary map visualisation

Projections

Raw map visualisation (Raw map calculated from deposited two half-maps)

Volume graphs

Download: EMDB Mask Learn more EMDB Raw Map Learn more Depositor Half Map 1 Depositor Half Map 2

Map resolution (Å) measured by Fourier Shell Correlation (FSC)
	EMDB calculated FSC			Author FSC
Threshold	Unmasked	Masked	Corrected	Author
FSC 0.143	4.74	4.70	4.70	3.69
FSC 0.5	6.51	4.87	4.87	4.32
FSC half-bit	4.86	4.71	4.71	3.87