Capsid of empty GTA particle computed with C5 symmetry
Resolution: 3.42 Å
EM Method: Single-particle
Fitted PDBs: 6tsu
Q-score: 0.532
Bardy P, Fuzik T, Hrebik D, Pantucek R, Thomas Beatty J, Plevka P
Nat Commun (2020) 11 pp. 3034-3034 [ Pubmed: 32541663 DOI: doi:10.1038/s41467-020-16669-9 ]
- Uncharacterized protein (9 kDa, Protein from Rhodobacter capsulatus DE442)
- Uncharacterized protein (32 kDa, Protein from Rhodobacter capsulatus DE442)
- Major capsid protein rcc01687 (40 kDa, Protein from Rhodobacter capsulatus DE442)
- Head spike (Complex from Rhodobacter capsulatus DE442)
- Rhodobacter capsulatus de442 gene transfer agent capsid (80 kDa, Complex from Rhodobacter capsulatus DE442)
Resolution: 10.47 Å
EM Method: Single-particle
Fitted PDBs: 6tui
Q-score: 0.08
Bardy P, Fuzik T, Hrebik D, Pantucek R, Beatty JT, Plevka P
Nat Commun (2020) 11 pp. 3034- [ Pubmed: 32541663 DOI: doi:10.1038/s41467-020-16669-9 ]
- Phage major capsid protein, hk97 family (40 kDa, Protein from Rhodobacter capsulatus SB 1003)
- Stopper protein rcc01689 (12 kDa, Protein from Rhodobacter capsulatus SB 1003)
- Connector (760 kDa, Complex from Rhodobacter capsulatus SB 1003)
- Head spike (80 kDa, Complex from Rhodobacter capsulatus SB 1003)
- Tail (730 kDa, Complex from Rhodobacter capsulatus SB 1003)
- Rhodobacter capsulatus de442 (8 MDa, Virus)
- Uncharacterized protein (32 kDa, Protein from Rhodobacter capsulatus SB 1003)
- Portal protein rcc01684 (42 kDa, Protein from Rhodobacter capsulatus SB 1003)
- Adaptor protein rcc01688 (20 kDa, Protein from Rhodobacter capsulatus SB 1003)
- Tail terminator protein rcc01690 (13 kDa, Protein from Rhodobacter capsulatus SB 1003)
- Capsid (5 MDa, Complex from Rhodobacter capsulatus SB 1003)
- Tail tube protein rcc01691 (14 kDa, Protein from Rhodobacter capsulatus SB 1003)
- Uncharacterized protein (9 kDa, Protein from Rhodobacter capsulatus SB 1003)
Virion of native gene transfer agent (GTA) particle
Resolution: 4.54 Å
EM Method: Single-particle
Fitted PDBs: 6tba
Q-score: 0.472
Bardy P, Fuzik T, Hrebik D, Pantucek R, Thomas Beatty J, Plevka P
Nat Commun (2020) 11 pp. 3034-3034 [ Pubmed: 32541663 DOI: doi:10.1038/s41467-020-16669-9 ]
- Iron/sulfur cluster (351 Da, Ligand)
- Baseplate (Complex from Rhodobacter capsulatus SB 1003)
- Phage major capsid protein, hk97 family (40 kDa, Protein from Rhodobacter capsulatus SB 1003)
- Uncharacterized protein (20 kDa, Protein from Rhodobacter capsulatus SB 1003)
- Phage major tail protein, tp901-1 family (14 kDa, Protein from Rhodobacter capsulatus SB 1003)
- Portal protein rcc01684 (42 kDa, Protein from Rhodobacter capsulatus SB 1003)
- Uncharacterized protein (32 kDa, Protein from Rhodobacter capsulatus SB 1003)
- Connector (Complex from Rhodobacter capsulatus SB 1003)
- Uncharacterized protein (13 kDa, Protein from Rhodobacter capsulatus SB 1003)
- Uncharacterized protein (12 kDa, Protein from Rhodobacter capsulatus SB 1003)
- Uncharacterized protein (22 kDa, Protein from Rhodobacter capsulatus SB 1003)
- Head spike (Complex from Rhodobacter capsulatus SB 1003)
- Uncharacterized protein (138 kDa, Protein from Rhodobacter capsulatus SB 1003)
- Uncharacterized protein (31 kDa, Protein from Rhodobacter capsulatus SB 1003)
- Uncharacterized protein (9 kDa, Protein from Rhodobacter capsulatus SB 1003)
- Capsid (Complex from Rhodobacter capsulatus SB 1003)
- Rhodobacter capsulatus sb 1003 (880 kDa, Virus from Rhodobacter capsulatus SB 1003)
- Tail (Complex from Rhodobacter capsulatus SB 1003)
Icosahedrally averaged capsid of empty particle of bacteriophage P68
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 6ib1
Q-score: 0.484
Hrebik D, Stverakova D, Skubnik K, Fuzik T, Pantucek R, Plevka P
Sci Adv (2019) 5 pp. eaaw7414-eaaw7414 [ Pubmed: 31663016 DOI: doi:10.1126/sciadv.aaw7414 ]
- Major capsid protein (Complex from Staphylococcus phage P68)
- Arstotzka protein (Complex from Staphylococcus phage P68)
- Uncharacterized protein (6 kDa, Protein from Staphylococcus phage P68)
- Staphylococcus phage p68 (6 kDa, Virus from Staphylococcus phage P68)
- Major head protein (46 kDa, Protein from Staphylococcus phage P68)