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EMBL

was set up in 1974 as Europe’s flagship laboratory for the life sciences – an intergovernmental organisation with more than 80 independent research groups covering the spectrum of molecular biology:

Research:

perform basic research in molecular biology

Services:

offer vital services to scientists in the member states

Training

scientists, students and visitors at all levels

Transfer

and development of technology

Develop

new instruments and methods

Integrating

life science research in Europe

More about EMBL

Six sites

represent EMBL in Europe.

Barcelona

Tissue biology and disease modelling

Grenoble

Structural biology

Hamburg

Structural biology

Heidelberg

Main laboratory

Hinxton

EMBL-EBI: European Bioinformatics Institute

Rome

Epigenetics and neurobiology

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sample_name:"Uncharacterized protein" AND author_name:"Bueler SA"

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EMD-24455

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Mycobacterial CIII2CIV2 supercomplex, Inhibitor free

Release date: Aug. 4, 2021
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 7rh5
Q-score: 0.513

Yanofsky DJ, Di Trani JM, Krol S, Abdelaziz R, Bueler SA, Imming P, Brzezinski P, Rubinstein JL

eLife (2021) 10 [ DOI: doi:10.7554/eLife.71959 Pubmed: 34590581 ]

Sample:

Cytochrome bc1 complex cytochrome c subunit (23 kDa, Protein from Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155))
Cardiolipin (1 kDa, Ligand)
Superoxide dismutase [cu-zn] (21 kDa, Protein from Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155))
(2s)-1-(hexadecanoyloxy)propan-2-yl (10s)-10-methyloctadecanoate (594 Da, Ligand)
Cytochrome aa3 subunit 2 (38 kDa, Protein from Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155))
Palmitic acid (256 Da, Ligand)
Putative conserved transmembrane protein (11 kDa, Protein from Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155))
(2r)-3-(((2-aminoethoxy)(hydroxy)phosphoryl)oxy)-2-(palmitoyloxy)propyl (e)-octadec-9-enoate (717 Da, Ligand)
Respiratory supercomplex ciii2civ2sod2 from mycobacterium smegmatis (Complex from Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155))
Cytochrome c oxidase subunit ctaj (8 kDa, Protein from Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155))
Cytochrome aa3 subunit 3 (22 kDa, Protein from Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155))
Heme c (618 Da, Ligand)
Lpqe protein (16 kDa, Protein from Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155))
(2r)-2-(hexadecanoyloxy)-3-{[(s)-hydroxy{[(1r,2r,3r,4r,5r,6s)-2,3,4,5,6-pentahydroxycyclohexyl]oxy}phosphoryl]oxy}propyl (9s)-9-methyloctadecanoate (853 Da, Ligand)
Cytochrome c oxidase polypeptide 4 (15 kDa, Protein from Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155))
Cytochrome bc1 complex cytochrome b subunit (59 kDa, Protein from Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155))
Heme-a (852 Da, Ligand)
Uncharacterized protein msmeg_4692/msmei_4575 (14 kDa, Protein from Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155))
Protoporphyrin ix containing fe (616 Da, Ligand)
Fe2/s2 (inorganic) cluster (175 Da, Ligand)
Menaquinone-9 (785 Da, Ligand)
Cytochrome c oxidase subunit 1 (63 kDa, Protein from Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155))
Cytochrome bc1 complex rieske iron-sulfur subunit (42 kDa, Protein from Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155))
Copper (ii) ion (63 Da, Ligand)

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EMD-24456

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Mycobacterial CIII2CIV2 supercomplex, inhibitor free, -Lpqe cyt cc open

Release date: Aug. 4, 2021
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 7rh6
Q-score: 0.395

Yanofsky DJ, Di Trani JM, Krol S, Abdelaziz R, Bueler SA, Imming P, Brzezinski P, Rubinstein JL

eLife (2021) 10 [ DOI: doi:10.7554/eLife.71959 Pubmed: 34590581 ]

Sample:

Cytochrome bc1 complex cytochrome c subunit (23 kDa, Protein from Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155))
Cardiolipin (1 kDa, Ligand)
Superoxide dismutase [cu-zn] (21 kDa, Protein from Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155))
(2s)-1-(hexadecanoyloxy)propan-2-yl (10s)-10-methyloctadecanoate (594 Da, Ligand)
Respiratory complex ciii2civ2sod2 from mycobacterium smegmatis (Complex from Mycolicibacterium smegmatis MC2 155)
Palmitic acid (256 Da, Ligand)
Putative conserved transmembrane protein (11 kDa, Protein from Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155))
(2r)-3-(((2-aminoethoxy)(hydroxy)phosphoryl)oxy)-2-(palmitoyloxy)propyl (e)-octadec-9-enoate (717 Da, Ligand)
Cytochrome c oxidase subunit ctaj (8 kDa, Protein from Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155))
Cytochrome aa3 subunit 3 (22 kDa, Protein from Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155))
Heme c (618 Da, Ligand)
Lpqe protein (16 kDa, Protein from Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155))
(2r)-2-(hexadecanoyloxy)-3-{[(s)-hydroxy{[(1r,2r,3r,4r,5r,6s)-2,3,4,5,6-pentahydroxycyclohexyl]oxy}phosphoryl]oxy}propyl (9s)-9-methyloctadecanoate (853 Da, Ligand)
Cytochrome c oxidase polypeptide 4 (15 kDa, Protein from Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155))
Cytochrome bc1 complex cytochrome b subunit (59 kDa, Protein from Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155))
Heme-a (852 Da, Ligand)
Uncharacterized protein msmeg_4692/msmei_4575 (14 kDa, Protein from Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155))
Cytochrome aa3 subunit 2 (35 kDa, Protein from Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155))
Fe2/s2 (inorganic) cluster (175 Da, Ligand)
Protoporphyrin ix containing fe (616 Da, Ligand)
Menaquinone-9 (785 Da, Ligand)
Cytochrome bc1 complex rieske iron-sulfur subunit (42 kDa, Protein from Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155))
Copper (ii) ion (63 Da, Ligand)
Cytochrome c oxidase subunit 1 (61 kDa, Protein from Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155))

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EMD-24457

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Mycobacterial CIII2CIV2 supercomplex, Telacebec (Q203) bound

Release date: Aug. 4, 2021
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 7rh7
Q-score: 0.477

Yanofsky DJ, Di Trani JM, Krol S, Abdelaziz R, Bueler SA, Imming P, Brzezinski P, Rubinstein JL

eLife (2021) 10 [ DOI: doi:10.7554/eLife.71959 Pubmed: 34590581 ]

Sample:

Cardiolipin (1 kDa, Ligand)
Lpqe protein (16 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
Uncharacterized protein msmeg_4692/msmei_4575 (14 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
Conserved transmembrane protein (11 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
(2s)-1-(hexadecanoyloxy)propan-2-yl (10s)-10-methyloctadecanoate (594 Da, Ligand)
6-chloranyl-2-ethyl-n-[[4-[4-[4-(trifluoromethyloxy)phenyl]piperidin-1-yl]phenyl]methyl]imidazo[1,2-a]pyridine-3-carboxamide (557 Da, Ligand)
Respiratory complex ciii2civ2sod2 from mycobacterium smegmatis (Complex from Mycolicibacterium smegmatis MC2 155)
Palmitic acid (256 Da, Ligand)
(2r)-3-(((2-aminoethoxy)(hydroxy)phosphoryl)oxy)-2-(palmitoyloxy)propyl (e)-octadec-9-enoate (717 Da, Ligand)
Cytochrome bc1 complex cytochrome c subunit (23 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
Cytochrome c oxidase polypeptide 4 (15 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
Heme c (618 Da, Ligand)
Cytochrome aa3 subunit 2 (35 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
(2r)-2-(hexadecanoyloxy)-3-{[(s)-hydroxy{[(1r,2r,3r,4r,5r,6s)-2,3,4,5,6-pentahydroxycyclohexyl]oxy}phosphoryl]oxy}propyl (9s)-9-methyloctadecanoate (853 Da, Ligand)
Heme-a (852 Da, Ligand)
Cytochrome bc1 complex cytochrome b subunit (59 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
Superoxide dismutase [cu-zn] (21 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
Cytochrome bc1 complex rieske iron-sulfur subunit (42 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
Protoporphyrin ix containing fe (616 Da, Ligand)
Fe2/s2 (inorganic) cluster (175 Da, Ligand)
Cytochrome c oxidase subunit 1 (61 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
Menaquinone-9 (785 Da, Ligand)
Copper (ii) ion (63 Da, Ligand)
Cytochrome c oxidase subunit ctaj (8 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
Cytochrome aa3 subunit 3 (22 kDa, Protein from Mycolicibacterium smegmatis MC2 155)

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EMD-21347

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Mammalian V-ATPase from rat brain soluble V1 region rotational state 2 with SidK and ADP (from focused refinement)

Release date: March 18, 2020
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 6vqb
Q-score: 0.418

Abbas YM, Wu D, Bueler SA, Robinson CV, Rubinstein JL

Science (2020) 367 pp. 1240-1246 [ DOI: doi:10.1126/science.aaz2924 Pubmed: 32165585 ]

Sample:

V-type proton atpase subunit e 1 (26 kDa, Protein from Rattus norvegicus)
Atpase h+-transporting v1 subunit a (68 kDa, Protein from Rattus norvegicus)
V-type proton atpase subunit b, brain isoform (56 kDa, Protein from Rattus norvegicus)
V-type proton atpase subunit g (13 kDa, Protein from Rattus norvegicus)
Uncharacterized protein (34 kDa, Protein from Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513))
Adenosine-5'-diphosphate (427 Da, Ligand)
Atpase h+-transporting v1 subunit d (28 kDa, Protein from Rattus norvegicus)
Soluble region of rat brain v-atpase composed of subunits a, b2, d, e1, g2, and the legionella pneumophila effector protein sidk. (Complex from Rattus norvegicus)

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EMD-8726

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Yeast V-ATPase in complex with Legionella pneumophila effector SidK (rotational state 3)

Release date: June 28, 2017
Resolution: 7.6 Å
EM Method: Single-particle
Fitted PDBs: 5voz
Q-score: 0.214

Zhao J, Beyrakhova K, Liu Y, Alvarez CP, Bueler SA, Xu L, Xu C, Boniecki MT, Kanelis V, Luo ZQ, Cygler M, Rubinstein JL

PLoS Pathog (2017) 13 pp. e1006394-e1006394 [ DOI: doi:10.1371/journal.ppat.1006394 Pubmed: 28570695 ]

Sample:

V-type proton atpase catalytic subunit a,v-type proton atpase catalytic subunit a (67 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
V-type proton atpase subunit c (44 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
V-type proton atpase subunit e (8 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
V-type proton atpase subunit b (57 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Sidk (Complex from Legionella pneumophila subsp. pneumophila ATCC 43290)
V-type proton atpase subunit c'' (22 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
V-type proton atpase subunit f (13 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
V-type proton atpase subunit d (39 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
V-atpase (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
V-type proton atpase subunit g (12 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
V-atpase:sidk complex (Complex)
V-type proton atpase subunit h (54 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
V-type proton atpase subunit a, vacuolar isoform (95 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
V-type proton atpase subunit c' (17 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
V-type proton atpase subunit c (16 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
V-type proton atpase subunit f (4 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
V-type proton atpase subunit d (29 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
V-type proton atpase subunit e (26 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Uncharacterized protein (65 kDa, Protein from Legionella pneumophila subsp. pneumophila ATCC 43290)

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Select database:

EMDB [5]

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