Do data resources managed by EMBL-EBI and our collaborators make a difference to your work? Please take 10 minutes to fill in our annual user survey, and help us make the case for why sustaining open data resources is critical for life sciences research. We appreciate your responses prior to closing of the survey on Monday 17th June.
Edit your search query here and hit Return to execute it:
sample_name:"SPERMINE" AND author_orcid:"0000-0003-0644-7877"
55S mammalian mitochondrial ribosome with mtRF1 and P-site tRNA
Release date: June 14, 2023
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 8oin
Q-score: 0.384
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 8oin
Q-score: 0.384
Saurer M, Leibundgut M, Nadimpalli HP, Scaiola A, Schonhut T, Lee RG, Siira SJ, Rackham O, Dreos R, Lenarcic T, Kummer E, Gatfield D, Filipovska A, Ban N
Science (2023) 380 pp. 531-536 [ Pubmed: 37141370 DOI: doi:10.1126/science.adf9890 ]
Sample:
- Ml42 (16 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l14 (34 kDa, Protein from Sus scrofa)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- 39s ribosomal protein s30, mitochondrial (49 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l46 (32 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s2 (31 kDa, Protein from Sus scrofa)
- Spermine (202 Da, Ligand)
- Mitochondrial ribosomal protein l57 (12 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l11 (20 kDa, Protein from Sus scrofa)
- Ul2m (33 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l18 (21 kDa, Protein from Sus scrofa)
- Potassium ion (39 Da, Ligand)
- 16s rrna (504 kDa, RNA from Sus scrofa)
- Mitochondrial ribosomal protein l53 (12 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s7 (28 kDa, Protein from Sus scrofa)
- Bl17m (19 kDa, Protein from Sus scrofa)
- 39s ribosomal protein l52, mitochondrial (17 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s22 (43 kDa, Protein from Sus scrofa)
- Guanosine-5'-diphosphate (443 Da, Ligand)
- Mitoribosomal protein bs6m, mrps6 (14 kDa, Protein from Sus scrofa)
- Ict1 (43 kDa, Protein from Sus scrofa)
- Ul22m (24 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l34 (10 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l4 (33 kDa, Protein from Sus scrofa)
- 39s ribosomal protein l23, mitochondrial (17 kDa, Protein from Sus scrofa)
- Ul16m (28 kDa, Protein from Sus scrofa)
- Ms23 (21 kDa, Protein from Sus scrofa)
- Ms39 (78 kDa, Protein from Sus scrofa)
- Ribosomal protein (10 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s12 (15 kDa, Protein from Sus scrofa)
- Ul24m (24 kDa, Protein from Sus scrofa)
- Mrpl34 (18 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l35 (21 kDa, Protein from Sus scrofa)
- Water (18 Da, Ligand)
- Mitochondrial ribosomal protein l20 (17 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s10 (23 kDa, Protein from Sus scrofa)
- 39s ribosomal protein l43, mitochondrial isoform x2 (17 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l28 (30 kDa, Protein from Sus scrofa)
- Coiled-coil-helix-coiled-coil-helix domain containing 1 (13 kDa, Protein from Sus scrofa)
- Ml62 (ict1) (23 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l41 (15 kDa, Protein from Sus scrofa)
- Spermidine (145 Da, Ligand)
- Mitochondrial ribosomal protein l47 (29 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s18c (16 kDa, Protein from Sus scrofa)
- Peptide chain release factor 1, mitochondrial (55 kDa, Protein from Homo sapiens)
- Mitochondrial ribosomal protein l38 (44 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s33 (16 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l51 (15 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l10 (29 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l39 (38 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l12 (21 kDa, Protein from Sus scrofa)
- 39s ribosomal protein l1, mitochondrial (34 kDa, Protein from Sus scrofa)
- P-site met-trna(fmet) (22 kDa, RNA from Homo sapiens)
- Mitochondrial ribosomal protein s27 (45 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l32 (23 kDa, Protein from Sus scrofa)
- 28s ribosomal protein s31, mitochondrial (43 kDa, Protein from Sus scrofa)
- 28s ribosomal protein s21, mitochondrial (10 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s18a (22 kDa, Protein from Sus scrofa)
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- 28s ribosomal protein s15, mitochondrial (29 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l40 (19 kDa, Protein from Sus scrofa)
- Phenylalanine (165 Da, Ligand)
- Ul30m (18 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s34 (55 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s11 (20 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s14 (15 kDa, Protein from Sus scrofa)
- Ml54 (15 kDa, Protein from Sus scrofa)
- 28s ribosomal protein s18b, mitochondrial (29 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s25 (19 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s24 (18 kDa, Protein from Sus scrofa)
- Us9m (45 kDa, Protein from Sus scrofa)
- 28s ribosomal protein s35, mitochondrial isoform 1 (41 kDa, Protein from Sus scrofa)
- 39s ribosomal protein l13, mitochondrial (22 kDa, Protein from Sus scrofa)
- Us17m (14 kDa, Protein from Sus scrofa)
- 28s ribosomal protein s5, mitochondrial isoform x2 (48 kDa, Protein from Sus scrofa)
- 39s ribosomal protein l19, mitochondrial (34 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l37 (47 kDa, Protein from Sus scrofa)
- Mitoribosomal protein ms28, mrps28 (21 kDa, Protein from Sus scrofa)
- Mrna (2 kDa, RNA from Homo sapiens)
- Ml44 (37 kDa, Protein from Sus scrofa)
- Aurora kinase a interacting protein 1 (22 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s26 (23 kDa, Protein from Sus scrofa)
- Ml64 (25 kDa, Protein from Sus scrofa)
- Zinc ion (65 Da, Ligand)
- 55s mammalian mitochondrial ribosome with mtrf1 and p-site trna (2 MDa, Complex from Sus scrofa)
- Bl33m (7 kDa, Protein from Sus scrofa)
- 12s rrna (308 kDa, RNA from Sus scrofa)
- E-site trna (894 Da, RNA from Sus scrofa)
- 39s ribosomal protein l48, mitochondrial (29 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l9 (30 kDa, Protein from Sus scrofa)
- 39s ribosomal protein l15, mitochondrial (33 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l50 (22 kDa, Protein from Sus scrofa)
- 28s ribosomal protein s16, mitochondrial (15 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l21 (23 kDa, Protein from Sus scrofa)
- Bl31m (15 kDa, Protein from Sus scrofa)
- Cp phe-trna (23 kDa, RNA from Sus scrofa)
- Mitochondrial ribosomal protein l45 (35 kDa, Protein from Sus scrofa)
- N-formylmethionine (177 Da, Ligand)
- Death associated protein 3 (46 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l27 (15 kDa, Protein from Sus scrofa)
28S mammalian mitochondrial small ribosomal subunit with mtRF1 and P-site tRNA
Release date: May 24, 2023
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 8oip
Q-score: 0.418
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 8oip
Q-score: 0.418
Saurer M, Leibundgut M, Nadimpalli HP, Scaiola A, Schonhut T, Lee RG, Siira SJ, Rackham O, Dreos R, Lenarcic T, Kummer E, Gatfield D, Filipovska A, Ban N
Science (2023) 380 pp. 531-536 [ Pubmed: 37141370 DOI: doi:10.1126/science.adf9890 ]
Sample:
- Aurora kinase a interacting protein 1 (22 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s10 (23 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s26 (23 kDa, Protein from Sus scrofa)
- Fe-s-o hybrid cluster (335 Da, Ligand)
- Bs6m,mitochondrial ribosomal protein s6 (41 kDa, Protein from Sus scrofa)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Coiled-coil-helix-coiled-coil-helix domain containing 1 (13 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s34 (55 kDa, Protein from Sus scrofa)
- Zinc ion (65 Da, Ligand)
- 12s rrna (309 kDa, RNA from Sus scrofa)
- Mitochondrial ribosomal protein s2 (31 kDa, Protein from Sus scrofa)
- P-site met-trna(fmet) (22 kDa, RNA from Homo sapiens)
- Spermine (202 Da, Ligand)
- Spermidine (145 Da, Ligand)
- Mitochondrial ribosomal protein s11 (20 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s14 (15 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s18c (16 kDa, Protein from Sus scrofa)
- 28s ribosomal protein s18b, mitochondrial (29 kDa, Protein from Sus scrofa)
- Potassium ion (39 Da, Ligand)
- Peptide chain release factor 1, mitochondrial (55 kDa, Protein from Homo sapiens)
- Mitochondrial ribosomal protein s7 (28 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s33 (16 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s22 (43 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s25 (19 kDa, Protein from Sus scrofa)
- Guanosine-5'-diphosphate (443 Da, Ligand)
- Mitochondrial ribosomal protein s24 (18 kDa, Protein from Sus scrofa)
- Us9m (45 kDa, Protein from Sus scrofa)
- 28s ribosomal protein s35, mitochondrial isoform 1 (41 kDa, Protein from Sus scrofa)
- Ms23 (21 kDa, Protein from Sus scrofa)
- Death associated protein 3 (46 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s27 (45 kDa, Protein from Sus scrofa)
- 28s ribosomal protein s16, mitochondrial (15 kDa, Protein from Sus scrofa)
- Us17m (14 kDa, Protein from Sus scrofa)
- Ms39 (78 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s12 (15 kDa, Protein from Sus scrofa)
- Bl31m (15 kDa, Protein from Sus scrofa)
- 28s mammalian mitochondrial small ribosomal subunit with mtrf1, mrna, and p-site trna (1 MDa, Complex from Sus scrofa)
- 28s ribosomal protein s5, mitochondrial isoform x2 (48 kDa, Protein from Sus scrofa)
- 28s ribosomal protein s31, mitochondrial (43 kDa, Protein from Sus scrofa)
- 39s ribosomal protein l19, mitochondrial (34 kDa, Protein from Sus scrofa)
- 28s ribosomal protein s21, mitochondrial (10 kDa, Protein from Sus scrofa)
- Mitoribosomal protein ms28, mrps28 (21 kDa, Protein from Sus scrofa)
- Water (18 Da, Ligand)
- Mrna (2 kDa, RNA from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- 28s ribosomal protein s15, mitochondrial (29 kDa, Protein from Sus scrofa)
55S mammalian mitochondrial ribosome with mtRRF (pre) and tRNA(P/E)
Release date: June 2, 2021
Resolution: 4.6 Å
EM Method: Single-particle
Fitted PDBs: 7nsi
Q-score: 0.228
Resolution: 4.6 Å
EM Method: Single-particle
Fitted PDBs: 7nsi
Q-score: 0.228
Kummer E, Schubert KN, Schoenhut T, Scaiola A, Ban N
Mol Cell (2021) 81 pp. 2566-2582.e6 [ DOI: doi:10.1016/j.molcel.2021.03.042 Pubmed: 33878294 ]
Sample:
- 39s ribosomal protein l9, mitochondrial (30 kDa, Protein from Pig)
- 39s ribosomal protein l19, mitochondrial (33 kDa, Protein from Pig)
- 28s ribosomal protein s31, mitochondrial (44 kDa, Protein from Pig)
- 39s ribosomal protein l27, mitochondrial (15 kDa, Protein from Pig)
- 39s ribosomal protein l16, mitochondrial (28 kDa, Protein from Pig)
- 28s ribosomal protein s21, mitochondrial (10 kDa, Protein from Pig)
- 39s ribosomal protein l46, mitochondrial (32 kDa, Protein from Pig)
- 28s ribosomal protein s14, mitochondrial (15 kDa, Protein from Pig)
- Spermine (202 Da, Ligand)
- Mitochondrial ribosomal protein s34 (25 kDa, Protein from Pig)
- 28s ribosomal protein s2, mitochondrial (31 kDa, Protein from Pig)
- Death associated protein 3 (46 kDa, Protein from Pig)
- Ribosomal_l2_c domain-containing protein (33 kDa, Protein from Pig)
- 39s ribosomal protein l10, mitochondrial isoform a (29 kDa, Protein from Pig)
- 39s ribosomal protein l35, mitochondrial (21 kDa, Protein from Pig)
- 39s ribosomal protein l52, mitochondrial (13 kDa, Protein from Pig)
- 39s ribosomal protein l20, mitochondrial isoform 1 (17 kDa, Protein from Pig)
- Unknown (1 kDa, Protein from Pig)
- Aurora kinase a interacting protein 1 (22 kDa, Protein from Pig)
- 16s rrna (504 kDa, RNA from Pig)
- 28s ribosomal protein s24, mitochondrial (18 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l57 (12 kDa, Protein from Pig)
- 39s ribosomal protein l38, mitochondrial (44 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l41 (15 kDa, Protein from Pig)
- 39s ribosomal protein l48, mitochondrial (29 kDa, Protein from Pig)
- Water (18 Da, Ligand)
- 28s ribosomal protein s35, mitochondrial isoform 1 (37 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s27 (51 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s18a (22 kDa, Protein from Pig)
- Trna (p/e) (21 kDa, RNA from Pig)
- 12s rrna (308 kDa, RNA from Pig)
- 39s ribosomal protein l13, mitochondrial (20 kDa, Protein from Pig)
- 39s ribosomal protein l11, mitochondrial isoform a (20 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l55 (15 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l47 (30 kDa, Protein from Pig)
- 39s ribosomal protein l34, mitochondrial (10 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s23 (21 kDa, Protein from Pig)
- 39s ribosomal protein l24, mitochondrial isoform x1 (24 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l4 (33 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l40 (24 kDa, Protein from Pig)
- 39s ribosomal protein l43, mitochondrial isoform x2 (17 kDa, Protein from Pig)
- 39s ribosomal protein l15, mitochondrial (33 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s6 (30 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l58 (23 kDa, Protein from Pig)
- Ml42 (16 kDa, Protein from Pig)
- Magnesium ion (24 Da, Ligand)
- Pentatricopeptide repeat domain 3,pentatricopeptide repeat domain 3,ms39,pentatricopeptide repeat domain 3,pentatricopeptide repeat domain 3 (76 kDa, Protein from Pig)
- 28s ribosomal protein s15, mitochondrial (27 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s11 (20 kDa, Protein from Pig)
- 28s ribosomal protein s9, mitochondrial (45 kDa, Protein from Pig)
- 39s ribosomal protein l37, mitochondrial (47 kDa, Protein from Pig)
- 39s ribosomal protein l44, mitochondrial (37 kDa, Protein from Pig)
- 39s ribosomal protein l49, mitochondrial (18 kDa, Protein from Pig)
- 39s ribosomal protein s30, mitochondrial (49 kDa, Protein from Pig)
- Ribosomal protein (10 kDa, Protein from Pig)
- Tgs domain-containing protein (38 kDa, Protein from Pig)
- Ml53 (12 kDa, Protein from Pig)
- 28s ribosomal protein s26, mitochondrial (23 kDa, Protein from Pig)
- Coiled-coil-helix-coiled-coil-helix domain containing 1 (13 kDa, Protein from Pig)
- 55s mammalian mitochondrial ribosome with mtrrf (pre) and trna(p/e) (Complex)
- 28s ribosomal protein s18c, mitochondrial isoform 1 (16 kDa, Protein from Pig)
- Mrna (1 kDa, RNA from Pig)
- 28s ribosomal protein s28, mitochondrial (21 kDa, Protein from Pig)
- 39s ribosomal protein l51, mitochondrial (15 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l12 (21 kDa, Protein from Pig)
- 28s ribosomal protein s5, mitochondrial isoform x2 (48 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s33 (12 kDa, Protein from Pig)
- Ribosome-recycling factor, mitochondrial (28 kDa, Protein from Homo sapiens)
- Interferon alpha-inducible protein 6 (19 kDa, Protein from Pig)
- 28s ribosomal protein s16, mitochondrial (15 kDa, Protein from Pig)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- 39s ribosomal protein l28, mitochondrial (30 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s22 (43 kDa, Protein from Pig)
- Bl32m (21 kDa, Protein from Pig)
- 39s ribosomal protein l50, mitochondrial (22 kDa, Protein from Pig)
- Zinc ion (65 Da, Ligand)
- Cp trnaphe (23 kDa, RNA from Pig)
- 39s ribosomal protein l21, mitochondrial isoform d (23 kDa, Protein from Pig)
- 39s ribosomal protein l30, mitochondrial (18 kDa, Protein from Pig)
- Ict1 (43 kDa, Protein from Pig)
- Guanosine-5'-monophosphate (363 Da, Ligand)
- 39s ribosomal protein l17, mitochondrial (19 kDa, Protein from Pig)
- 39s ribosomal protein l33, mitochondrial (7 kDa, Protein from Pig)
- 39s ribosomal protein l22, mitochondrial (24 kDa, Protein from Pig)
- 55s mammalian mitochondrial ribosome (Complex from Sus scrofa)
- 39s ribosomal protein l59, mitochondrial (25 kDa, Protein from Pig)
- 28s ribosomal protein s7, mitochondrial (28 kDa, Protein from Pig)
- 39s ribosomal protein l23, mitochondrial (17 kDa, Protein from Pig)
- 28s ribosomal protein s10, mitochondrial (23 kDa, Protein from Pig)
- 28s ribosomal protein s18b, mitochondrial (29 kDa, Protein from Pig)
- Ul14m (15 kDa, Protein from Pig)
- Us17m (14 kDa, Protein from Pig)
- 39s ribosomal protein l18, mitochondrial isoform 1 (20 kDa, Protein from Pig)
- Ribosome-recycling factor, mitochondrial (Complex from Homo sapiens)
- Mitoribosomal protein us12m, mrps12 (15 kDa, Protein from Pig)
- 39s ribosomal protein l54, mitochondrial (15 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l45 (35 kDa, Protein from Pig)
55S mammalian mitochondrial ribosome with tRNA(P/P) and tRNA(E*)
Release date: June 2, 2021
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 7nsj
Q-score: 0.345
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 7nsj
Q-score: 0.345
Kummer E, Schubert KN, Schoenhut T, Scaiola A, Ban N
Mol Cell (2021) 81 pp. 2566-2582.e6 [ DOI: doi:10.1016/j.molcel.2021.03.042 Pubmed: 33878294 ]
Sample:
- 28s ribosomal protein s31, mitochondrial (44 kDa, Protein from Pig)
- Ml52 (13 kDa, Protein from Pig)
- Spermine (202 Da, Ligand)
- Mitochondrial ribosomal protein s25 (19 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s12 (15 kDa, Protein from Pig)
- Bs6m (30 kDa, Protein from Pig)
- Death associated protein 3 (46 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l10 (29 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l11 (20 kDa, Protein from Pig)
- Us11m (20 kDa, Protein from Pig)
- Ml62 (ict1) (23 kDa, Protein from Pig)
- Unknown (1 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s26 (23 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l19 (33 kDa, Protein from Pig)
- Aurora kinase a interacting protein 1 (22 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l27 (15 kDa, Protein from Pig)
- 16s rrna (504 kDa, RNA from Pig)
- Mitochondrial ribosomal protein l57 (12 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l35 (21 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l41 (15 kDa, Protein from Pig)
- 39s ribosomal protein l48, mitochondrial (29 kDa, Protein from Pig)
- Water (18 Da, Ligand)
- Mitochondrial ribosomal protein l38 (44 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s27 (51 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s18a (22 kDa, Protein from Pig)
- Bl33m (7 kDa, Protein from Pig)
- Bs21m (10 kDa, Protein from Pig)
- 12s rrna (308 kDa, RNA from Pig)
- Mitochondrial ribosomal protein l9 (30 kDa, Protein from Pig)
- Us9m (45 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l47 (30 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l39 (38 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l28 (30 kDa, Protein from Pig)
- Us15m (27 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s14 (15 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s2 (31 kDa, Protein from Pig)
- Ms23 (21 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l4 (33 kDa, Protein from Pig)
- Bl17m (19 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l40 (24 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l43 (17 kDa, Protein from Pig)
- Ul23m (17 kDa, Protein from Pig)
- 55s mammalian mitochondrial ribosome with trna(p/p) and trna(e*) (Complex from Sus scrofa)
- Mitochondrial ribosomal protein s35 (37 kDa, Protein from Pig)
- Ml42 (16 kDa, Protein from Pig)
- Magnesium ion (24 Da, Ligand)
- Mitochondrial ribosomal protein l20 (17 kDa, Protein from Pig)
- 39s ribosomal protein s30, mitochondrial (49 kDa, Protein from Pig)
- Ul13m (20 kDa, Protein from Pig)
- Ms34 (25 kDa, Protein from Pig)
- Ribosomal protein (10 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l51 (15 kDa, Protein from Pig)
- Ml53 (12 kDa, Protein from Pig)
- Ms33 (12 kDa, Protein from Pig)
- Ml54 (15 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l46 (32 kDa, Protein from Pig)
- Ul2m (33 kDa, Protein from Pig)
- Ml44 (37 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l12 (21 kDa, Protein from Pig)
- 28s ribosomal protein s5, mitochondrial isoform x2 (48 kDa, Protein from Pig)
- Trna(p/p) and trna(e*) (21 kDa, RNA from Pig)
- Ms37 (13 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l18 (20 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l21 (23 kDa, Protein from Pig)
- 28s ribosomal protein s16, mitochondrial (15 kDa, Protein from Pig)
- Ul15m (33 kDa, Protein from Pig)
- Ul24m (24 kDa, Protein from Pig)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Mitochondrial ribosomal protein s24 (18 kDa, Protein from Pig)
- Ul16m (28 kDa, Protein from Pig)
- Ul22m (24 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s22 (43 kDa, Protein from Pig)
- Bl32m (21 kDa, Protein from Pig)
- Zinc ion (65 Da, Ligand)
- Mitochondrial ribosomal protein l37 (47 kDa, Protein from Pig)
- Cp trnaphe (23 kDa, RNA from Pig)
- Mitoribosomal protein ms28, mrps28 (21 kDa, Protein from Pig)
- Ul30m (18 kDa, Protein from Pig)
- Bl31m (15 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s10 (23 kDa, Protein from Pig)
- Ict1 (43 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s18c (16 kDa, Protein from Pig)
- Guanosine-5'-monophosphate (363 Da, Ligand)
- Ml64 (25 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l50 (22 kDa, Protein from Pig)
- Pentatricopeptide repeat domain 3,pentatricopeptide repeat domain 3,pentatricopeptide repeat domain 3,pentatricopeptide repeat domain 3,ms39,pentatricopeptide repeat domain 3,pentatricopeptide repeat domain 3,pentatricopeptide repeat domain 3,pentatricopeptide repeat domain 3 (76 kDa, Protein from Pig)
- 28s ribosomal protein s18b, mitochondrial (29 kDa, Protein from Pig)
- Mrpl34 (18 kDa, Protein from Pig)
- Ul14m (15 kDa, Protein from Pig)
- Us17m (14 kDa, Protein from Pig)
- Mrna (1 kDa, RNA from Pig)
- Mitochondrial ribosomal protein l34 (10 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l45 (35 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s7 (28 kDa, Protein from Pig)
55S mammalian mitochondrial ribosome with mtRF1a and P-site tRNAMet
Release date: May 5, 2021
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 7nqh
Q-score: 0.421
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 7nqh
Q-score: 0.421
Kummer E, Schubert KN, Schoenhut T, Scaiola A, Ban N
Mol Cell (2021) 81 pp. 2566-2582.e6 [ DOI: doi:10.1016/j.molcel.2021.03.042 Pubmed: 33878294 ]
Sample:
- Ml52 (13 kDa, Protein from Pig)
- Spermine (202 Da, Ligand)
- Mitochondrial ribosomal protein s25 (19 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s12 (15 kDa, Protein from Pig)
- Bs6m (30 kDa, Protein from Pig)
- Death associated protein 3 (46 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l10 (29 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l11 (20 kDa, Protein from Pig)
- Us11m (20 kDa, Protein from Pig)
- Translation termination complex of mitochondrial ribosome (Complex from Sus scrofa)
- Ml62 (ict1) (23 kDa, Protein from Pig)
- Unknown (1 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s26 (23 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l19 (33 kDa, Protein from Pig)
- Aurora kinase a interacting protein 1 (22 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l27 (15 kDa, Protein from Pig)
- 16s rrna (504 kDa, RNA from Pig)
- Mitochondrial ribosomal protein l57 (12 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l35 (21 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l41 (15 kDa, Protein from Pig)
- 39s ribosomal protein l48, mitochondrial (29 kDa, Protein from Pig)
- Water (18 Da, Ligand)
- Mitochondrial ribosomal protein l38 (44 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s27 (51 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s18a (22 kDa, Protein from Pig)
- Bl33m (7 kDa, Protein from Pig)
- Bs21m (10 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s5 (48 kDa, Protein from Pig)
- 12s rrna (308 kDa, RNA from Pig)
- Mitochondrial ribosomal protein l9 (30 kDa, Protein from Pig)
- Us9m (45 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l47 (30 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l39 (38 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l28 (30 kDa, Protein from Pig)
- Us15m (27 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s14 (15 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s2 (31 kDa, Protein from Pig)
- Ms23 (21 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l4 (33 kDa, Protein from Pig)
- Bl17m (19 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l43 (17 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s31 (44 kDa, Protein from Pig)
- Ul23m (17 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s35 (37 kDa, Protein from Pig)
- Ml42 (16 kDa, Protein from Pig)
- Magnesium ion (24 Da, Ligand)
- Mitochondrial ribosomal protein l20 (17 kDa, Protein from Pig)
- 39s ribosomal protein s30, mitochondrial (49 kDa, Protein from Pig)
- Mrna (2 kDa, RNA from Homo sapiens)
- Ul13m (20 kDa, Protein from Pig)
- Ms34 (25 kDa, Protein from Pig)
- Ribosomal protein (10 kDa, Protein from Pig)
- Rna (Complex from Homo sapiens)
- Mitochondrial ribosomal protein l51 (15 kDa, Protein from Pig)
- Ml53 (12 kDa, Protein from Pig)
- Ms33 (12 kDa, Protein from Pig)
- Ml54 (15 kDa, Protein from Pig)
- Trnamet (22 kDa, RNA from Homo sapiens)
- Pentatricopeptide repeat domain 3 (79 kDa, Protein from Pig)
- Trna(phe) in lsu (23 kDa, RNA from Pig)
- Mitochondrial ribosomal protein l46 (32 kDa, Protein from Pig)
- Ul2m (33 kDa, Protein from Pig)
- Ml44 (37 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l12 (21 kDa, Protein from Pig)
- Ms37 (13 kDa, Protein from Pig)
- Peptide chain release factor 1-like, mitochondrial (41 kDa, Protein from Homo sapiens)
- Mitochondrial ribosomal protein l18 (20 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l21 (23 kDa, Protein from Pig)
- 28s ribosomal protein s16, mitochondrial (15 kDa, Protein from Pig)
- Ul15m (33 kDa, Protein from Pig)
- Ul24m (24 kDa, Protein from Pig)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Mitochondrial ribosomal protein s24 (18 kDa, Protein from Pig)
- Ul16m (28 kDa, Protein from Pig)
- Ul22m (24 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s22 (43 kDa, Protein from Pig)
- Bl32m (21 kDa, Protein from Pig)
- Zinc ion (65 Da, Ligand)
- Mitochondrial ribosomal protein l37 (47 kDa, Protein from Pig)
- Mitoribosomal protein ms28, mrps28 (21 kDa, Protein from Pig)
- Ul30m (18 kDa, Protein from Pig)
- Bl31m (15 kDa, Protein from Pig)
- Ml40 (24 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s10 (23 kDa, Protein from Pig)
- Ict1 (43 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s18c (16 kDa, Protein from Pig)
- Guanosine-5'-monophosphate (363 Da, Ligand)
- Translation termination complex of mitochondrial ribosome with release factor mtrf1a and p-site trnamet (Complex)
- Ml64 (25 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l50 (22 kDa, Protein from Pig)
- 28s ribosomal protein s7, mitochondrial (27 kDa, Protein from Pig)
- 28s ribosomal protein s18b, mitochondrial (29 kDa, Protein from Pig)
- Mrpl34 (18 kDa, Protein from Pig)
- Ul14m (15 kDa, Protein from Pig)
- Us17m (14 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l34 (10 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l45 (35 kDa, Protein from Pig)
- Peptide chain release factor 1-like, mitochondrial (Complex from Homo sapiens)
55S mammalian mitochondrial ribosome with ICT1 and P site tRNAMet
Release date: May 5, 2021
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 7nql
Q-score: 0.437
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 7nql
Q-score: 0.437
Kummer E, Schubert KN, Schoenhut T, Scaiola A, Ban N
Mol Cell (2021) 81 pp. 2566-2582.e6 [ DOI: doi:10.1016/j.molcel.2021.03.042 Pubmed: 33878294 ]
Sample:
- Ml42 (16 kDa, Protein from Sus scrofa)
- Ml53 (12 kDa, Protein from Sus scrofa)
- 39s ribosomal protein s30, mitochondrial (49 kDa, Protein from Sus scrofa)
- Ms33 (12 kDa, Protein from Sus scrofa)
- Ict1 (Complex from Homo sapiens)
- Mitochondrial ribosomal protein l46 (32 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s2 (31 kDa, Protein from Sus scrofa)
- Spermine (202 Da, Ligand)
- Mitochondrial ribosomal protein l57 (12 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l11 (20 kDa, Protein from Sus scrofa)
- Ul2m (33 kDa, Protein from Sus scrofa)
- Fmet-trnamet (p site) (22 kDa, RNA from Homo sapiens)
- Mitochondrial ribosomal protein l40 (24 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s7 (28 kDa, Protein from Sus scrofa)
- Ul15m (33 kDa, Protein from Sus scrofa)
- Bl17m (19 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s22 (43 kDa, Protein from Sus scrofa)
- Ict1 (43 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l34 (10 kDa, Protein from Sus scrofa)
- Ul16m (28 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l4 (33 kDa, Protein from Sus scrofa)
- Ul22m (24 kDa, Protein from Sus scrofa)
- Us11m (20 kDa, Protein from Sus scrofa)
- Ms23 (21 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l19 (33 kDa, Protein from Sus scrofa)
- Ribosomal protein (10 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s12 (15 kDa, Protein from Sus scrofa)
- Ul24m (24 kDa, Protein from Sus scrofa)
- Mrpl34 (18 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l35 (21 kDa, Protein from Sus scrofa)
- Water (18 Da, Ligand)
- Mitochondrial ribosomal protein l20 (17 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s10 (23 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l28 (30 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s31 (44 kDa, Protein from Sus scrofa)
- Ml62 (ict1) (23 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l41 (15 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l43 (17 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s18c (16 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l38 (44 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l51 (15 kDa, Protein from Sus scrofa)
- Mrna (1 kDa, RNA from Homo sapiens)
- Mitochondrial ribosomal protein l39 (38 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l12 (21 kDa, Protein from Sus scrofa)
- Cp trnaphe (23 kDa, RNA from Sus scrofa)
- Peptidyl-trna hydrolase ict1, mitochondrial (20 kDa, Protein from Homo sapiens)
- 16s rrna (504 kDa, RNA from Sus scrofa)
- Us15m (27 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s18a (22 kDa, Protein from Sus scrofa)
- Unknown (1 kDa, Protein from unidentified)
- Magnesium ion (24 Da, Ligand)
- Mitochondrial ribosomal protein s27 (51 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s5 (48 kDa, Protein from Sus scrofa)
- Ms34 (25 kDa, Protein from Sus scrofa)
- Ul30m (18 kDa, Protein from Sus scrofa)
- Rna (Complex from Homo sapiens)
- Mitochondrial ribosomal protein s14 (15 kDa, Protein from Sus scrofa)
- Ml54 (15 kDa, Protein from Sus scrofa)
- 28s ribosomal protein s18b, mitochondrial (29 kDa, Protein from Sus scrofa)
- 12s rrna (308 kDa, RNA from Sus scrofa)
- Mitochondrial ribosomal protein s25 (19 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s24 (18 kDa, Protein from Sus scrofa)
- Us9m (45 kDa, Protein from Sus scrofa)
- Ms37 (13 kDa, Protein from Sus scrofa)
- Us17m (14 kDa, Protein from Sus scrofa)
- 55s mammalian mitochondrial ribosome with ict1 and p site fmet-trnamet (Complex)
- Mitochondrial ribosomal protein l37 (47 kDa, Protein from Sus scrofa)
- Mitoribosomal protein ms28, mrps28 (21 kDa, Protein from Sus scrofa)
- Bl32m (21 kDa, Protein from Sus scrofa)
- Ml44 (37 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s35 (37 kDa, Protein from Sus scrofa)
- Ul14m (15 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s26 (23 kDa, Protein from Sus scrofa)
- Aurora kinase a interacting protein 1 (22 kDa, Protein from Sus scrofa)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Ml64 (25 kDa, Protein from Sus scrofa)
- Ul23m (17 kDa, Protein from Sus scrofa)
- Bs6m (30 kDa, Protein from Sus scrofa)
- Unknown (Complex from unidentified)
- Ul13m (20 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l47 (30 kDa, Protein from Sus scrofa)
- Zinc ion (65 Da, Ligand)
- Ml52 (13 kDa, Protein from Sus scrofa)
- Guanosine-5'-monophosphate (363 Da, Ligand)
- Bl33m (7 kDa, Protein from Sus scrofa)
- 55s mammalian mitochondrial ribosome (Complex from Sus scrofa)
- 39s ribosomal protein l48, mitochondrial (29 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l9 (30 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l50 (22 kDa, Protein from Sus scrofa)
- 28s ribosomal protein s16, mitochondrial (15 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l10 (29 kDa, Protein from Sus scrofa)
- Bs21m (10 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l18 (20 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l21 (23 kDa, Protein from Sus scrofa)
- Bl31m (15 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l45 (35 kDa, Protein from Sus scrofa)
- Pentatricopeptide repeat domain 3 (79 kDa, Protein from Sus scrofa)
- Death associated protein 3 (46 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l27 (15 kDa, Protein from Sus scrofa)
39S mammalian mitochondrial large ribosomal subunit with mtRRF (post) and mtEFG2
Release date: May 5, 2021
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7nsh
Q-score: 0.49
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7nsh
Q-score: 0.49
Kummer E, Schubert KN, Schoenhut T, Scaiola A, Ban N
Mol Cell (2021) 81 pp. 2566-2582.e6 [ DOI: doi:10.1016/j.molcel.2021.03.042 Pubmed: 33878294 ]
Sample:
- Mitochondrial ribosomal protein l38 (44 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s18a (22 kDa, Protein from Pig)
- Bl33m (7 kDa, Protein from Pig)
- Ribosome-releasing factor 2, mitochondrial (83 kDa, Protein from Homo sapiens)
- Ml52 (13 kDa, Protein from Pig)
- Ul16m (28 kDa, Protein from Pig)
- Ul22m (24 kDa, Protein from Pig)
- Bl32m (21 kDa, Protein from Pig)
- 39s ribosomal protein s30, mitochondrial (49 kDa, Protein from Pig)
- Zinc ion (65 Da, Ligand)
- Water (18 Da, Ligand)
- Mitochondrial ribosomal protein l37 (47 kDa, Protein from Pig)
- Cp trnaphe (23 kDa, RNA from Pig)
- 39s mammalian mitochondrial large ribosomal subunit with mtrrf (post) and mtefg2 (Complex)
- Ul30m (18 kDa, Protein from Pig)
- Ul13m (20 kDa, Protein from Pig)
- Bl31m (15 kDa, Protein from Pig)
- Ribosomal protein (10 kDa, Protein from Pig)
- Spermine (202 Da, Ligand)
- Mitochondrial ribosomal protein l9 (30 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l51 (15 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l39 (38 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l47 (30 kDa, Protein from Pig)
- Ml53 (12 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l28 (30 kDa, Protein from Pig)
- Ict1 (43 kDa, Protein from Pig)
- Guanosine-5'-monophosphate (363 Da, Ligand)
- Ml54 (15 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l10 (29 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l11 (20 kDa, Protein from Pig)
- Magnesium ion (24 Da, Ligand)
- Ml64 (25 kDa, Protein from Pig)
- Phosphoaminophosphonic acid-guanylate ester (522 Da, Ligand)
- Mitochondrial ribosomal protein l50 (22 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l4 (33 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l40 (24 kDa, Protein from Pig)
- Bl17m (19 kDa, Protein from Pig)
- Ml62 (ict1) (23 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l43 (17 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l46 (32 kDa, Protein from Pig)
- Ul2m (33 kDa, Protein from Pig)
- Ml44 (37 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l12 (21 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l19 (33 kDa, Protein from Pig)
- Ul23m (17 kDa, Protein from Pig)
- 39s mammalian mitochondrial large ribosomal subunit (Complex from Sus scrofa)
- Mitochondrial ribosomal protein l27 (15 kDa, Protein from Pig)
- Mrpl34 (18 kDa, Protein from Pig)
- 16s rrna (504 kDa, RNA from Pig)
- Ul14m (15 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l57 (12 kDa, Protein from Pig)
- Mtrrf (post) and mtefg2 (Complex from Homo sapiens)
- Mitochondrial ribosomal protein l35 (21 kDa, Protein from Pig)
- Ribosome-recycling factor, mitochondrial (28 kDa, Protein from Homo sapiens)
- Mitochondrial ribosomal protein l34 (10 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l45 (35 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l18 (20 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l21 (23 kDa, Protein from Pig)
- Ml42 (16 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l41 (15 kDa, Protein from Pig)
- 39s ribosomal protein l48, mitochondrial (29 kDa, Protein from Pig)
- Ul15m (33 kDa, Protein from Pig)
- Ul24m (24 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l20 (17 kDa, Protein from Pig)
55S mammalian mitochondrial ribosome with mtEFG1 and P site fMet-tRNAMet (POST)
Release date: July 15, 2020
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 6ydp
Q-score: 0.484
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 6ydp
Q-score: 0.484
EMBO J (2020) 39 pp. e104820-e104820 [ Pubmed: 32602580 DOI: doi:10.15252/embj.2020104820 ]
Sample:
- Ul24m (24 kDa, Protein from Pig)
- Mrpl34 (18 kDa, Protein from Pig)
- Spermine (202 Da, Ligand)
- Mitochondrial ribosomal protein l39 (38 kDa, Protein from Pig)
- Bs6m (30 kDa, Protein from Pig)
- Bl33m (7 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l11 (20 kDa, Protein from Pig)
- Ul14m (15 kDa, Protein from Pig)
- Us11m (20 kDa, Protein from Pig)
- Death associated protein 3 (46 kDa, Protein from Pig)
- Ul30m (18 kDa, Protein from Pig)
- Ml62 (ict1) (23 kDa, Protein from Pig)
- Ms23 (21 kDa, Protein from Pig)
- Unknown peptide (1 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s26 (23 kDa, Protein from Pig)
- Aurora kinase a interacting protein 1 (22 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l27 (15 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l57 (12 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s25 (19 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l35 (21 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l41 (15 kDa, Protein from Pig)
- 39s ribosomal protein l48, mitochondrial (29 kDa, Protein from Pig)
- Water (18 Da, Ligand)
- Mitochondrial ribosomal protein l38 (44 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s18a (22 kDa, Protein from Pig)
- Bs21m (10 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s5 (48 kDa, Protein from Pig)
- 55s s. scrofa mitochondrial ribosome in complex with mtefg1 and fmet-trnamet (1 MDa, Complex)
- 39s ribosomal protein s30, mitochondrial (49 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l34 (10 kDa, Protein from Pig)
- Us9m (45 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l9 (30 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l47 (30 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l28 (30 kDa, Protein from Pig)
- 12s rrna (5 MDa, RNA from Pig)
- Mitochondrial ribosomal protein s14 (15 kDa, Protein from Pig)
- Phosphoaminophosphonic acid-guanylate ester (522 Da, Ligand)
- Mitochondrial ribosomal protein s2 (31 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l4 (33 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l37 (47 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l43 (17 kDa, Protein from Pig)
- Cp trnaphe (23 kDa, RNA from Sus scrofa)
- Mrna (1 kDa, RNA from Homo sapiens)
- Mitochondrial ribosomal protein s35 (37 kDa, Protein from Pig)
- Ml42 (16 kDa, Protein from Pig)
- Magnesium ion (24 Da, Ligand)
- Mitochondrial ribosomal protein l20 (17 kDa, Protein from Pig)
- Uncharacterized protein (19 kDa, Protein from Pig)
- Ms34 (25 kDa, Protein from Pig)
- Fmet-trnamet (p site) (22 kDa, RNA from Homo sapiens)
- Mitochondrial ribosomal protein l10 (29 kDa, Protein from Pig)
- Fmet-trnamet (p site) and mrna (Complex from Homo sapiens)
- Elongation factor g, mitochondrial (80 kDa, Protein from Homo sapiens)
- Mitochondrial ribosomal protein s31 (44 kDa, Protein from Pig)
- Ul13m (20 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l51 (15 kDa, Protein from Pig)
- Uncharacterized protein (24 kDa, Protein from Pig)
- Ms33 (12 kDa, Protein from Pig)
- Ml54 (15 kDa, Protein from Pig)
- Us15m (27 kDa, Protein from Pig)
- 28s ribosomal protein s18b, mitochondrial (29 kDa, Protein from Pig)
- Ict1 (38 kDa, Protein from Pig)
- 28s ribosomal protein s16, mitochondrial (15 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l19 (33 kDa, Protein from Pig)
- Pentatricopeptide repeat domain 3 (79 kDa, Protein from Pig)
- Ul2m (33 kDa, Protein from Pig)
- Ml44 (37 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l12 (21 kDa, Protein from Pig)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Mitochondrial ribosomal protein s24 (18 kDa, Protein from Pig)
- Ms37 (13 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l21 (23 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s27 (49 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l18 (20 kDa, Protein from Pig)
- Ul15m (33 kDa, Protein from Pig)
- Ml52 (13 kDa, Protein from Pig)
- Ul16m (28 kDa, Protein from Pig)
- 55s s. scrofa mitochondrial ribosome (Complex from Sus scrofa)
- Ribosomal protein (10 kDa, Protein from Pig)
- Elongation factor g, mitochondrial (Complex from Homo sapiens)
- Bl32m (21 kDa, Protein from Pig)
- Zinc ion (65 Da, Ligand)
- Mitoribosomal protein ms28, mrps28 (21 kDa, Protein from Pig)
- Bl31m (15 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l46 (32 kDa, Protein from Pig)
- Ul22m (24 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s12 (15 kDa, Protein from Pig)
- Guanosine-5'-monophosphate (363 Da, Ligand)
- Mitochondrial ribosomal protein s18c (16 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s10 (23 kDa, Protein from Pig)
- Ml64 (25 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l50 (22 kDa, Protein from Pig)
- Ml53 (12 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s22 (43 kDa, Protein from Pig)
- Ul23m (17 kDa, Protein from Pig)
- Us17m (14 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l45 (35 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s7 (28 kDa, Protein from Pig)
- N-formylmethionine (177 Da, Ligand)
55S mammalian mitochondrial ribosome with mtEFG1 and two tRNAMet (TI-POST)
Release date: July 15, 2020
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 6ydw
Q-score: 0.31
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 6ydw
Q-score: 0.31
EMBO J (2020) 39 pp. e104820-e104820 [ Pubmed: 32602580 DOI: doi:10.15252/embj.2020104820 ]
Sample:
- Mrpl34 (18 kDa, Protein from Pig)
- Spermine (202 Da, Ligand)
- Mitochondrial ribosomal protein l39 (38 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l11 (20 kDa, Protein from Pig)
- Us11m (20 kDa, Protein from Pig)
- Death associated protein 3 (46 kDa, Protein from Pig)
- Uncharacterized protein (13 kDa, Protein from Pig)
- Ms23 (21 kDa, Protein from Pig)
- Unknown peptide (1 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s26 (23 kDa, Protein from Pig)
- Trnamet and mrna (Complex from Homo sapiens)
- Aurora kinase a interacting protein 1 (22 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l27 (15 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l57 (12 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s25 (19 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l35 (21 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l41 (15 kDa, Protein from Pig)
- 39s ribosomal protein l48, mitochondrial (29 kDa, Protein from Pig)
- Water (18 Da, Ligand)
- Uncharacterized protein (45 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l38 (44 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s18a (22 kDa, Protein from Pig)
- Bs21m (10 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s5 (48 kDa, Protein from Pig)
- 39s ribosomal protein s30, mitochondrial (49 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l34 (10 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l9 (30 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l47 (30 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l28 (30 kDa, Protein from Pig)
- Uncharacterized protein (25 kDa, Protein from Pig)
- Elongation factor g, mitochondrial (80 kDa, Protein from Homo sapiens)
- Mitochondrial ribosomal protein s14 (15 kDa, Protein from Pig)
- Uncharacterized protein (37 kDa, Protein from Pig)
- Phosphoaminophosphonic acid-guanylate ester (522 Da, Ligand)
- Mitochondrial ribosomal protein s2 (31 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l4 (33 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l37 (47 kDa, Protein from Pig)
- Uncharacterized protein (15 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l43 (17 kDa, Protein from Pig)
- Mrna (1 kDa, RNA from Homo sapiens)
- Uncharacterized protein (16 kDa, Protein from Pig)
- Uncharacterized protein (21 kDa, Protein from Pig)
- Trnamet (22 kDa, RNA from Homo sapiens)
- Mitochondrial ribosomal protein s35 (37 kDa, Protein from Pig)
- 55s s. scrofa mitochondrial ribosome in complex with mtefg1, two trna-met and cugaug mrna (2 MDa, Complex)
- Magnesium ion (24 Da, Ligand)
- Mitochondrial ribosomal protein s27 (51 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l20 (17 kDa, Protein from Pig)
- Uncharacterized protein (28 kDa, Protein from Pig)
- Uncharacterized protein (19 kDa, Protein from Pig)
- Ms34 (25 kDa, Protein from Pig)
- Uncharacterized protein (23 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l10 (29 kDa, Protein from Pig)
- Uncharacterized protein (20 kDa, Protein from Pig)
- Uncharacterized protein (17 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s31 (44 kDa, Protein from Pig)
- Uncharacterized protein (15 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l51 (15 kDa, Protein from Pig)
- Uncharacterized protein (24 kDa, Protein from Pig)
- Ms33 (12 kDa, Protein from Pig)
- Uncharacterized protein (18 kDa, Protein from Pig)
- Us15m (27 kDa, Protein from Pig)
- Uncharacterized protein (33 kDa, Protein from Pig)
- 28s ribosomal protein s18b, mitochondrial (29 kDa, Protein from Pig)
- Ict1 (38 kDa, Protein from Pig)
- 28s ribosomal protein s16, mitochondrial (15 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l19 (33 kDa, Protein from Pig)
- Uncharacterized protein (15 kDa, Protein from Pig)
- Uncharacterized protein (24 kDa, Protein from Pig)
- Ms39 (78 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l12 (21 kDa, Protein from Pig)
- Uncharacterized protein (7 kDa, Protein from Pig)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Mitochondrial ribosomal protein s24 (18 kDa, Protein from Pig)
- Ms37 (13 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l21 (23 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l18 (20 kDa, Protein from Pig)
- Uncharacterized protein (30 kDa, Protein from Pig)
- 12s rrna (5 MDa, RNA from Sus scrofa)
- 55s s. scrofa mitochondrial ribosome (Complex from Sus scrofa)
- Ribosomal protein (10 kDa, Protein from Pig)
- Elongation factor g, mitochondrial (Complex from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- Mitoribosomal protein ms28, mrps28 (21 kDa, Protein from Pig)
- Cp trna-phe (23 kDa, RNA from Sus scrofa)
- Mitochondrial ribosomal protein l46 (32 kDa, Protein from Pig)
- Uncharacterized protein (33 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s12 (15 kDa, Protein from Pig)
- Guanosine-5'-monophosphate (363 Da, Ligand)
- Mitochondrial ribosomal protein s18c (16 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s10 (23 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l50 (22 kDa, Protein from Pig)
- Ml53 (12 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s22 (43 kDa, Protein from Pig)
- Us17m (14 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l45 (35 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s7 (28 kDa, Protein from Pig)
- N-formylmethionine (177 Da, Ligand)
- Uncharacterized protein (24 kDa, Protein from Pig)
Release date: Aug. 22, 2018
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 6gaw
Q-score: 0.449
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 6gaw
Q-score: 0.449
Kummer E, Leibundgut M, Rackham O, Lee RG, Boehringer D, Filipovska A, Ban N
Nature (2018) 560 pp. 263-267 [ Pubmed: 30089917 DOI: doi:10.1038/s41586-018-0373-y ]
Sample:
- Coiled-coil-helix-coiled-coil-helix domain-containing protein 1 (13 kDa, Protein from Pig)
- 39s ribosomal protein l16, mitochondrial (28 kDa, Protein from Pig)
- 28s ribosomal protein s34, mitochondrial (25 kDa, Protein from Pig)
- Ml65 (49 kDa, Protein from Sus scrofa)
- Spermine (202 Da, Ligand)
- Mitochondrial ribosomal protein l39 (38 kDa, Protein from Pig)
- Ml43 (17 kDa, Protein from Pig)
- Ml50 (18 kDa, Protein from Pig)
- 28s ribosomal protein s35, mitochondrial (37 kDa, Protein from Pig)
- Bl33m (7 kDa, Protein from Pig)
- Ul14m (15 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l48 (23 kDa, Protein from Pig)
- Pentatricopeptide repeat domain-containing protein 3, mitochondrial (78 kDa, Protein from Pig)
- Unassigned secondary structure elements (5 kDa, Protein from Sus scrofa)
- Death associated protein 3 (45 kDa, Protein from Pig)
- 5'-guanosine-diphosphate-monothiophosphate (539 Da, Ligand)
- Mitochondrial ribosomal protein s10 (23 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s26 (23 kDa, Protein from Pig)
- Aurora kinase a interacting protein 1 (22 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l27 (15 kDa, Protein from Pig)
- 39s ribosomal protein l40, mitochondrial isoform 1 (24 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l57 (12 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s25 (19 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l35 (21 kDa, Protein from Pig)
- Ms31 (44 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l41 (15 kDa, Protein from Pig)
- Water (18 Da, Ligand)
- Mt-co3 mrna, mitochondrial (63 kDa, RNA from Homo sapiens)
- Ml53 (12 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l38 (44 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s18a (22 kDa, Protein from Pig)
- 12s ribosomal rna, mitochondrial (308 kDa, RNA from Sus scrofa)
- Bs21m (10 kDa, Protein from Pig)
- 16s ribosomal rna, mitochondrial (504 kDa, RNA from pig)
- Mitochondrial ribosomal protein s5 (48 kDa, Protein from Pig)
- 39s ribosomal protein l13, mitochondrial (20 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l34 (10 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l9 (30 kDa, Protein from Pig)
- Mammalian mitochondrial translation initiation complex (2 MDa, Complex from sus sucorfa)
- Mitochondrial ribosomal protein l47 (30 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l28 (30 kDa, Protein from Pig)
- Ms27 (51 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s14 (15 kDa, Protein from Pig)
- Peptidyl-trna hydrolase ict1, mitochondrial (23 kDa, Protein from Pig)
- Translation initiation factor if-2, mitochondrial (72 kDa, Protein from Homo sapiens)
- Mitochondrial ribosomal protein s2 (31 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l4 (33 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l37 (47 kDa, Protein from Pig)
- 28s ribosomal protein s11, mitochondrial (20 kDa, Protein from Pig)
- 39s ribosomal protein l15, mitochondrial (33 kDa, Protein from Pig)
- Sodium ion (22 Da, Ligand)
- Trna-phe, mitochondrial (23 kDa, RNA from pig)
- 39s ribosomal protein l52, mitochondrial (13 kDa, Protein from Pig)
- 39s ribosomal protein l2, mitochondrial (33 kDa, Protein from Pig)
- Ml42 (16 kDa, Protein from Pig)
- Magnesium ion (24 Da, Ligand)
- Mitochondrial ribosomal protein l20 (17 kDa, Protein from Pig)
- 28s ribosomal protein s9, mitochondrial (45 kDa, Protein from Pig)
- 39s ribosomal protein l44, mitochondrial (37 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s6 (14 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l10 (29 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l51 (15 kDa, Protein from Pig)
- Ms33 (12 kDa, Protein from Pig)
- P-site fmet-trnamet, mitochondrial (22 kDa, RNA from Homo sapiens)
- Ml54 (15 kDa, Protein from Pig)
- 28s ribosomal protein s18b, mitochondrial (29 kDa, Protein from Pig)
- Ict1 (38 kDa, Protein from Pig)
- 39s ribosomal protein l49, mitochondrial (18 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l19 (33 kDa, Protein from Pig)
- Unassigned secondary structure elements (1 kDa, Protein from Sus scrofa)
- Bs16m (15 kDa, Protein from Sus scrofa)
- Ul30m (18 kDa, Protein from Pig)
- 28s ribosomal protein s28, mitochondrial (21 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l12 (21 kDa, Protein from Pig)
- Ml45 (35 kDa, Protein from Pig)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Mitochondrial ribosomal protein s24 (18 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l18 (20 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l21 (23 kDa, Protein from Pig)
- 39s ribosomal protein l24, mitochondrial (24 kDa, Protein from Pig)
- Ribosomal protein (10 kDa, Protein from Pig)
- Bl32m (21 kDa, Protein from Pig)
- Zinc ion (65 Da, Ligand)
- Mitochondrial ribosomal protein l46 (32 kDa, Protein from Pig)
- Ul22m (24 kDa, Protein from Pig)
- 39s ribosomal protein l55, mitochondrial (15 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s12 (15 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l11 (20 kDa, Protein from pig)
- Mitochondrial ribosomal protein s18c (16 kDa, Protein from Pig)
- Guanosine-5'-monophosphate (363 Da, Ligand)
- Uncharacterized protein (27 kDa, Protein from Pig)
- 39s ribosomal protein l17, mitochondrial (19 kDa, Protein from Pig)
- Ml64 (25 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s22 (43 kDa, Protein from Pig)
- Ul23m (17 kDa, Protein from Pig)
- Us17m (14 kDa, Protein from Pig)
- 28s ribosomal protein s23, mitochondrial (21 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s7 (28 kDa, Protein from Pig)
- N-formylmethionine (177 Da, Ligand)