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EMBL

was set up in 1974 as Europe’s flagship laboratory for the life sciences – an intergovernmental organisation with more than 80 independent research groups covering the spectrum of molecular biology:

Research:

perform basic research in molecular biology

Services:

offer vital services to scientists in the member states

Training

scientists, students and visitors at all levels

Transfer

and development of technology

Develop

new instruments and methods

Integrating

life science research in Europe

More about EMBL

Six sites

represent EMBL in Europe.

Barcelona

Tissue biology and disease modelling

Grenoble

Structural biology

Hamburg

Structural biology

Heidelberg

Main laboratory

Hinxton

EMBL-EBI: European Bioinformatics Institute

Rome

Epigenetics and neurobiology

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sample_name:"SPERMINE" AND author_orcid:"0000-0002-5783-0887"

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EMD-12756

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Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution)

Release date: June 2, 2021
Resolution: 2.2 Å
EM Method: Single-particle
Fitted PDBs: 7o7y
Q-score: 0.624

Bhatt PR, Scaiola A, Loughran G, Leibundgut M, Kratzel A, Meurs R, Dreos R, O'Connor KM, McMillan A, Bode JW, Thiel V, Gatfield D, Atkins JF, Ban N

Science (2021) 372 pp. 1306-1313 [ Pubmed: 34029205 DOI: doi:10.1126/science.abf3546 ]

Sample:

Ribosomal protein l3 (46 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s30 (14 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein es21 (9 kDa, Protein from Oryctolagus cuniculus)
El32 (15 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l34 (13 kDa, Protein from Oryctolagus cuniculus)
28s rrna (1 MDa, RNA from Oryctolagus cuniculus)
Ribosomal_l18_c domain-containing protein (34 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein s5 (22 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s11 (18 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein es17 (15 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein el20 (20 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein el8 (30 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l36 (12 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l10 (24 kDa, Protein from Oryctolagus cuniculus)
60s acidic ribosomal protein p0 (34 kDa, Protein from Oryctolagus cuniculus)
Water (18 Da, Ligand)
El42 (12 kDa, Protein from Oryctolagus cuniculus)
El39 (6 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein ul1 (24 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein s15a (14 kDa, Protein from Oryctolagus cuniculus)
El31 (14 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l41 (3 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein s9 (predicted) (22 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein sa (32 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l19 (23 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s3a (30 kDa, Protein from Oryctolagus cuniculus)
El43 (10 kDa, Protein from Oryctolagus cuniculus)
Ul23 (17 kDa, Protein from Oryctolagus cuniculus)
Rabbit 80s ribosome stalled close to the mutated sars-cov-2 slippery site by a pseudoknot (Complex)
E-site trna (15 kDa, RNA from Bos taurus)
El38 (8 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein ul13 (23 kDa, Protein from Oryctolagus cuniculus)
Ul29 (14 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein el13 (24 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s3 (31 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s12 (14 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s8 (24 kDa, Protein from Oryctolagus cuniculus)
5.8s rrna (50 kDa, RNA from Oryctolagus cuniculus)
Ribosomal protein es19 (16 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein el22 (14 kDa, Protein from Oryctolagus cuniculus)
P-site phe-trna(phe) (24 kDa, RNA from Bos taurus)
Ribosomal protein ul30 (29 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s23 (15 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l6 (33 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein s28 (7 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein us11 (16 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein l14 (23 kDa, Protein from Oryctolagus cuniculus)
18s rrna (603 kDa, RNA from Oryctolagus cuniculus)
Us14 (6 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s18 (17 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein l11 (20 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein us5 (31 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l40 (14 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l4 (46 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein us10 (13 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l27 (15 kDa, Protein from Oryctolagus cuniculus)
Es10 (18 kDa, Protein from Oryctolagus cuniculus)
5s rrna (38 kDa, RNA from Oryctolagus cuniculus)
Sars-cov-2 slippery site by a pseudoknot (Complex from Severe acute respiratory syndrome coronavirus 2)
Magnesium ion (24 Da, Ligand)
Ribosomal protein es26 (13 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l29 (26 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s7 (47 kDa, Protein from Oryctolagus cuniculus)
Mrna containing sars-cov-2 sequence (69 kDa, RNA from Severe acute respiratory syndrome coronavirus 2)
40s ribosomal protein s6 (28 kDa, Protein from Oryctolagus cuniculus)
Unknown atom or ion (Ligand)
Replicase polyprotein 1ab (121 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
Ribosomal protein el18 (21 kDa, Protein from Oryctolagus cuniculus)
Rack1 (35 kDa, Protein from Oryctolagus cuniculus)
Replicase polyprotein 1ab (Complex from Severe acute respiratory syndrome coronavirus 2)
Us9 (19 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l9 (21 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein l37 (11 kDa, Protein from Oryctolagus cuniculus)
Rabbit 80s ribosome stalled (Complex from Bos taurus)
Ribosomal protein l23 (14 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein l26 (17 kDa, Protein from Oryctolagus cuniculus)
El30 (12 kDa, Protein from Oryctolagus cuniculus)
Spermine (202 Da, Ligand)
Ribosomal protein l12 (17 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein es4 (29 kDa, Protein from Oryctolagus cuniculus)
Zinc ion (65 Da, Ligand)
Rabbit 80s ribosome stalled (Complex from Oryctolagus cuniculus)
Spermidine (145 Da, Ligand)
40s ribosomal protein s25 (13 kDa, Protein from Oryctolagus cuniculus)
El21 (18 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein us19 (17 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s24 (15 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein l15 (24 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s27 (9 kDa, Protein from Oryctolagus cuniculus)
Ul22 (21 kDa, Protein from Oryctolagus cuniculus)
El24 (17 kDa, Protein from Oryctolagus cuniculus)
El33 (12 kDa, Protein from Oryctolagus cuniculus)
Us15 (17 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l27a (16 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein ul2 (28 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein s27a (18 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein el28 (15 kDa, Protein from Oryctolagus cuniculus)

[Show more]

EMD-12757

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Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Release date: June 2, 2021
Resolution: 2.4 Å
EM Method: Single-particle
Fitted PDBs: 7o7z
Q-score: 0.576

Bhatt PR, Scaiola A, Loughran G, Leibundgut M, Kratzel A, Meurs R, Dreos R, O'Connor KM, McMillan A, Bode JW, Thiel V, Gatfield D, Atkins JF, Ban N

Science (2021) 372 pp. 1306-1313 [ Pubmed: 34029205 DOI: doi:10.1126/science.abf3546 ]

Sample:

Ribosomal protein l3 (46 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s30 (14 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein es21 (9 kDa, Protein from Oryctolagus cuniculus)
El32 (15 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l34 (13 kDa, Protein from Oryctolagus cuniculus)
28s rrna (1 MDa, RNA from Oryctolagus cuniculus)
Ribosomal_l18_c domain-containing protein (34 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein s5 (22 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s11 (18 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein es17 (15 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein el20 (20 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein el8 (30 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l36 (12 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l10 (24 kDa, Protein from Oryctolagus cuniculus)
60s acidic ribosomal protein p0 (34 kDa, Protein from Oryctolagus cuniculus)
Water (18 Da, Ligand)
El42 (12 kDa, Protein from Oryctolagus cuniculus)
El39 (6 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein ul1 (24 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein s15a (14 kDa, Protein from Oryctolagus cuniculus)
El31 (14 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l41 (3 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein s9 (predicted) (22 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein sa (32 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l19 (23 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s3a (30 kDa, Protein from Oryctolagus cuniculus)
5s (38 kDa, RNA from Oryctolagus cuniculus)
El43 (10 kDa, Protein from Oryctolagus cuniculus)
Ul23 (17 kDa, Protein from Oryctolagus cuniculus)
Rabbit 80s ribosome stalled close to the mutated sars-cov-2 slippery site by a pseudoknot (Complex)
E-site trna (15 kDa, RNA from Bos taurus)
El38 (8 kDa, Protein from Oryctolagus cuniculus)
18s rrna (603 kDa, RNA from Oryctolagus cuniculus)
Ribosomal protein ul13 (23 kDa, Protein from Oryctolagus cuniculus)
Ul29 (14 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein el13 (24 kDa, Protein from Oryctolagus cuniculus)
P-site phe-trna(phe) (24 kDa, RNA from Bos taurus)
40s ribosomal protein s3 (31 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s12 (14 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s8 (24 kDa, Protein from Oryctolagus cuniculus)
5.8s rrna (50 kDa, RNA from Oryctolagus cuniculus)
Ribosomal protein es19 (16 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein el22 (14 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein ul30 (29 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s23 (15 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l6 (33 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein s28 (7 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein us11 (16 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein l14 (23 kDa, Protein from Oryctolagus cuniculus)
Us14 (6 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s18 (17 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein l11 (20 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein us5 (31 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l40 (14 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l4 (46 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein us10 (13 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l27 (15 kDa, Protein from Oryctolagus cuniculus)
Es10 (18 kDa, Protein from Oryctolagus cuniculus)
Sars-cov-2 slippery site by a pseudoknot (Complex from Severe acute respiratory syndrome coronavirus 2)
Magnesium ion (24 Da, Ligand)
Ribosomal protein es26 (13 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l29 (26 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s7 (47 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s6 (28 kDa, Protein from Oryctolagus cuniculus)
Unknown atom or ion (Ligand)
Replicase polyprotein 1ab (121 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
Ribosomal protein el18 (21 kDa, Protein from Oryctolagus cuniculus)
Rack1 (35 kDa, Protein from Oryctolagus cuniculus)
Replicase polyprotein 1ab (Complex from Severe acute respiratory syndrome coronavirus 2)
Us9 (19 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l9 (21 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein l37 (11 kDa, Protein from Oryctolagus cuniculus)
Rabbit 80s ribosome stalled (Complex from Bos taurus)
Ribosomal protein l23 (14 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein l26 (17 kDa, Protein from Oryctolagus cuniculus)
El30 (12 kDa, Protein from Oryctolagus cuniculus)
Spermine (202 Da, Ligand)
Ribosomal protein l12 (17 kDa, Protein from Oryctolagus cuniculus)
Mrna containing sars-cov-2 sequence (70 kDa, RNA from Severe acute respiratory syndrome coronavirus 2)
Ribosomal protein es4 (29 kDa, Protein from Oryctolagus cuniculus)
Zinc ion (65 Da, Ligand)
Rabbit 80s ribosome stalled (Complex from Oryctolagus cuniculus)
Spermidine (145 Da, Ligand)
40s ribosomal protein s25 (13 kDa, Protein from Oryctolagus cuniculus)
El21 (18 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein us19 (17 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s24 (15 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein l15 (24 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s27 (9 kDa, Protein from Oryctolagus cuniculus)
Ul22 (21 kDa, Protein from Oryctolagus cuniculus)
El24 (17 kDa, Protein from Oryctolagus cuniculus)
El33 (12 kDa, Protein from Oryctolagus cuniculus)
Us15 (17 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l27a (16 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein ul2 (28 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein s27a (18 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein el28 (15 kDa, Protein from Oryctolagus cuniculus)

[Show more]

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Display: Statistics

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Select database:

EMDB [2]

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Shell (Unix-based) Batch (Windows-based)

Preview first 10

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