Do data resources managed by EMBL-EBI and our collaborators make a difference to your work? Please take 10 minutes to fill in our annual user survey, and help us make the case for why sustaining open data resources is critical for life sciences research. We appreciate your responses prior to closing of the survey on Monday 17th June.
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 7y6l
Q-score: 0.492
Takeshita M, Fukuyama H, Kamada K, Matsumoto T, Makino-Okamura C, Lin Q, Sakuma M, Kawahara E, Yamazaki I, Uchikubo-Kamo T, Tomabechi Y, Hanada K, Hisano T, Moriyama S, Takahashi Y, Ito M, Imai M, Maemura T, Furusawa Y, Yamayoshi S, Kawaoka Y, Shirouzu M, Ishii M, Saya H, Kondo Y, Kaneko Y, Suzuki K, Fukunaga K, Takeuchi T
iScience (2023) 26 pp. 106955-106955 [ Pubmed: 37288342 DOI: doi:10.1016/j.isci.2023.106955 ]
- Ab816 heavy chain (28 kDa, Protein from Homo sapiens)
- Ab816 light chain (26 kDa, Protein from Homo sapiens)
- Spike glycoprotein (141 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- The sars-cov-2 spike protein bound with the fab fragment of a human neutralizing antibody ab816 (560 kDa, Complex from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Resolution: 4.4 Å
EM Method: Single-particle
Fitted PDBs: 7y6n
Q-score: 0.288
Takeshita M, Fukuyama H, Kamada K, Matsumoto T, Makino-Okamura C, Lin Q, Sakuma M, Kawahara E, Yamazaki I, Uchikubo-Kamo T, Tomabechi Y, Hanada K, Hisano T, Moriyama S, Takahashi Y, Ito M, Imai M, Maemura T, Furusawa Y, Yamayoshi S, Kawaoka Y, Shirouzu M, Ishii M, Saya H, Kondo Y, Kaneko Y, Suzuki K, Fukunaga K, Takeuchi T
iScience (2023) 26 pp. 106955-106955 [ Pubmed: 37288342 DOI: doi:10.1016/j.isci.2023.106955 ]
- Spike glycoprotein (141 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Ab803 light chain (26 kDa, Protein from Homo sapiens)
- The sars-cov-2 spike protein bound with the fab fragment of a human neutralizing antibody ab803 (560 kDa, Complex from Homo sapiens)
- Ab803 heavy chain (28 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7x93
Q-score: 0.486
Takeshita M, Fukuyama H, Kamada K, Matsumoto T, Makino-Okamura C, Lin Q, Sakuma M, Kawahara E, Yamazaki I, Uchikubo-Kamo T, Tomabechi Y, Hanada K, Hisano T, Moriyama S, Takahashi Y, Ito M, Imai M, Maemura T, Furusawa Y, Yamayoshi S, Kawaoka Y, Shirouzu M, Ishii M, Saya H, Kondo Y, Kaneko Y, Suzuki K, Fukunaga K, Takeuchi T
iScience (2023) 26 pp. 106955-106955 [ Pubmed: 37288342 DOI: doi:10.1016/j.isci.2023.106955 ]
- Spike glycoprotein (141 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Ab765 light chain (25 kDa, Protein from Homo sapiens)
- The sars-cov-2 spike protein bound with the fab fragment of a human neutralizing antibody ab354 (560 kDa, Complex from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Ab765 heavy chain (28 kDa, Protein from Homo sapiens)
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 7x94
Q-score: 0.359
Takeshita M, Fukuyama H, Kamada K, Matsumoto T, Makino-Okamura C, Lin Q, Sakuma M, Kawahara E, Yamazaki I, Uchikubo-Kamo T, Tomabechi Y, Hanada K, Hisano T, Moriyama S, Takahashi Y, Ito M, Imai M, Maemura T, Furusawa Y, Yamayoshi S, Kawaoka Y, Shirouzu M, Ishii M, Saya H, Kondo Y, Kaneko Y, Suzuki K, Fukunaga K, Takeuchi T
iScience (2023) 26 pp. 106955-106955 [ Pubmed: 37288342 DOI: doi:10.1016/j.isci.2023.106955 ]
- Spike glycoprotein (141 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Ab712 light chain (25 kDa, Protein from Homo sapiens)
- The sars-cov-2 spike protein bound with the fab fragment of a human neutralizing antibody ab712 (560 kDa, Complex from Homo sapiens)
- Ab712 heavy chain (29 kDa, Protein from Homo sapiens)
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 7x95
Q-score: 0.386
Takeshita M, Fukuyama H, Kamada K, Matsumoto T, Makino-Okamura C, Lin Q, Sakuma M, Kawahara E, Yamazaki I, Uchikubo-Kamo T, Tomabechi Y, Hanada K, Hisano T, Moriyama S, Takahashi Y, Ito M, Imai M, Maemura T, Furusawa Y, Yamayoshi S, Kawaoka Y, Shirouzu M, Ishii M, Saya H, Kondo Y, Kaneko Y, Suzuki K, Fukunaga K, Takeuchi T
iScience (2023) 26 pp. 106955-106955 [ Pubmed: 37288342 DOI: doi:10.1016/j.isci.2023.106955 ]
- Spike glycoprotein (141 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Ab709 heavy chain (28 kDa, Protein from Homo sapiens)
- The sars-cov-2 spike protein bound with the fab fragment of a human neutralizing antibody ab709 (560 kDa, Complex from Homo sapiens)
- Ab709 light chain (25 kDa, Protein from Homo sapiens)
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 7x96
Q-score: 0.46
Takeshita M, Fukuyama H, Kamada K, Matsumoto T, Makino-Okamura C, Lin Q, Sakuma M, Kawahara E, Yamazaki I, Uchikubo-Kamo T, Tomabechi Y, Hanada K, Hisano T, Moriyama S, Takahashi Y, Ito M, Imai M, Maemura T, Furusawa Y, Yamayoshi S, Kawaoka Y, Shirouzu M, Ishii M, Saya H, Kondo Y, Kaneko Y, Suzuki K, Fukunaga K, Takeuchi T
iScience (2023) 26 pp. 106955-106955 [ Pubmed: 37288342 DOI: doi:10.1016/j.isci.2023.106955 ]
- Spike glycoprotein (141 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Ab847 heavy chain (28 kDa, Protein from Homo sapiens)
- The sars-cov-2 spike protein bound with the fab fragment of a human neutralizing antibody ab847 (560 kDa, Complex from Homo sapiens)
- Ab847 light chain (26 kDa, Protein from Homo sapiens)
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 7x8w
Q-score: 0.53
Takeshita M, Fukuyama H, Kamada K, Matsumoto T, Makino-Okamura C, Uchikubo-Kamo T, Tomabechi Y, Hanada K, Moriyama S, Takahashi Y, Ishigaki H, Nakayama M, Nguyen CT, Kitagawa Y, Itoh Y, Imai M, Maemura T, Furusawa Y, Ueki H, Iwatsuki-Horimoto K, Ito M, Yamayoshi S, Kawaoka Y, Shirouzu M, Ishii M, Saya H, Kondo Y, Kaneko Y, Suzuki K, Fukunaga K, Takeuchi T
iScience (2022) 25 pp. 105596-105596 [ DOI: doi:10.1016/j.isci.2022.105596 Pubmed: 36406861 ]
- Spike glycoprotein (141 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Ab354 heavy chain (28 kDa, Protein from Homo sapiens)
- Ab354 light chain (25 kDa, Protein from Homo sapiens)
- The sars-cov-2 spike protein bound with the fab fragment of a human neutralizing antibody ab354 (560 kDa, Complex from Homo sapiens)
Resolution: 4.1 Å
EM Method: Single-particle
Fitted PDBs: 7x8y
Q-score: 0.318
Takeshita M, Fukuyama H, Kamada K, Matsumoto T, Makino-Okamura C, Uchikubo-Kamo T, Tomabechi Y, Hanada K, Moriyama S, Takahashi Y, Ishigaki H, Nakayama M, Nguyen CT, Kitagawa Y, Itoh Y, Imai M, Maemura T, Furusawa Y, Ueki H, Iwatsuki-Horimoto K, Ito M, Yamayoshi S, Kawaoka Y, Shirouzu M, Ishii M, Saya H, Kondo Y, Kaneko Y, Suzuki K, Fukunaga K, Takeuchi T
iScience (2022) 25 pp. 105596-105596 [ DOI: doi:10.1016/j.isci.2022.105596 Pubmed: 36406861 ]
- Spike glycoprotein (141 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Ab159 heavy chain (28 kDa, Protein from Homo sapiens)
- Ab159 light chain (26 kDa, Protein from Homo sapiens)
- The sars-cov-2 spike protein bound with the fab fragment of a human neutralizing antibody ab159 (560 kDa, Complex from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Resolution: 4.1 Å
EM Method: Single-particle
Fitted PDBs: 7x8z
Q-score: 0.368
Takeshita M, Fukuyama H, Kamada K, Matsumoto T, Makino-Okamura C, Uchikubo-Kamo T, Tomabechi Y, Hanada K, Moriyama S, Takahashi Y, Ishigaki H, Nakayama M, Nguyen CT, Kitagawa Y, Itoh Y, Imai M, Maemura T, Furusawa Y, Ueki H, Iwatsuki-Horimoto K, Ito M, Yamayoshi S, Kawaoka Y, Shirouzu M, Ishii M, Saya H, Kondo Y, Kaneko Y, Suzuki K, Fukunaga K, Takeuchi T
iScience (2022) 25 pp. 105596-105596 [ DOI: doi:10.1016/j.isci.2022.105596 Pubmed: 36406861 ]
- Ab188 heavy chain (28 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Spike glycoprotein (141 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Ab188 light chain (27 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- The sars-cov-2 spike protein bound with the fab fragment of a human neutralizing antibody ab354 (560 kDa, Complex from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 7x90
Q-score: 0.392
Takeshita M, Fukuyama H, Kamada K, Matsumoto T, Makino-Okamura C, Uchikubo-Kamo T, Tomabechi Y, Hanada K, Moriyama S, Takahashi Y, Ishigaki H, Nakayama M, Nguyen CT, Kitagawa Y, Itoh Y, Imai M, Maemura T, Furusawa Y, Ueki H, Iwatsuki-Horimoto K, Ito M, Yamayoshi S, Kawaoka Y, Shirouzu M, Ishii M, Saya H, Kondo Y, Kaneko Y, Suzuki K, Fukunaga K, Takeuchi T
iScience (2022) 25 pp. 105596-105596 [ DOI: doi:10.1016/j.isci.2022.105596 Pubmed: 36406861 ]
- Spike glycoprotein (141 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- The sars-cov-2 spike protein bound with the fab fragment of a human neutralizing antibody ab326 (560 kDa, Complex from Homo sapiens)
- Ab326 light chain (26 kDa, Protein from Homo sapiens)
- Ab326 heavy chain (28 kDa, Protein from Homo sapiens)