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Cryo-EM structure of Symbiodinium photosystem I
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 8jjr
Q-score: 0.575
Zhao LS, Wang N, Li K, Li CY, Guo JP, He FY, Liu GM, Chen XL, Gao J, Liu LN, Zhang YZ
Nat Commun (2024) 15 pp. 2392-2392 [ DOI: doi:10.1038/s41467-024-46791-x Pubmed: 38493166 ]
- Pcpi-4 (24 kDa, Protein from Symbiodinium sp.)
- Psai (19 kDa, Protein from Symbiodinium sp.)
- Chlorophyll a (893 Da, Ligand)
- Pcpi-8 (30 kDa, Protein from Symbiodinium sp.)
- Peridinin (630 Da, Ligand)
- (3s,3'r,5r,6s,7cis)-7',8'-didehydro-5,6-dihydro-5,6-epoxy-beta,beta-carotene-3,3'-diol (582 Da, Ligand)
- Pcpi-1 (28 kDa, Protein from Symbiodinium sp.)
- Psae (13 kDa, Protein from Symbiodinium sp.)
- Psal (38 kDa, Protein from Symbiodinium sp.)
- Pcpi-7 (27 kDa, Protein from Symbiodinium sp.)
- Psaj (15 kDa, Protein from Symbiodinium sp.)
- Pcpi-5 (26 kDa, Protein from Symbiodinium sp.)
- Pcpi-13 (23 kDa, Protein from Symbiodinium sp.)
- Psar (17 kDa, Protein from Symbiodinium sp.)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Chlorophyll c2 (608 Da, Ligand)
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- Psab (74 kDa, Protein from Symbiodinium sp.)
- Iron/sulfur cluster (351 Da, Ligand)
- Psaa (76 kDa, Protein from Symbiodinium sp.)
- Photosystem i of symbiodinium (Complex from Symbiodinium sp.)
- Pcpi-3 (27 kDa, Protein from Symbiodinium sp.)
- Psam (14 kDa, Protein from Symbiodinium sp.)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Pcpi-6 (19 kDa, Protein from Symbiodinium sp.)
- Psat (13 kDa, Protein from Symbiodinium sp.)
- Pcp-11 (21 kDa, Protein from Symbiodinium sp.)
- Psau (24 kDa, Protein from Symbiodinium sp.)
- [(1~{s},5~{r})-3,3,5-trimethyl-5-oxidanyl-4-[(3~{e},5~{e},7~{e},9~{e},11~{e},13~{e},15~{e},17~{e})-3,7,12,16-tetramethyl-18-[(1~{s},4~{s},6~{r})-2,2,6-trimethyl-4-oxidanyl-7-oxabicyclo[4.1.0]heptan-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenylidene]cyclohexyl] ethanoate (642 Da, Ligand)
- Pcpi-12 (21 kDa, Protein from Symbiodinium sp.)
- Psad (32 kDa, Protein from Symbiodinium sp.)
- Beta-carotene (536 Da, Ligand)
- Psac (16 kDa, Protein from Symbiodinium sp.)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Phylloquinone (450 Da, Ligand)
- Dodecyl-alpha-d-maltoside (510 Da, Ligand)
- Pcpi-9 (22 kDa, Protein from Symbiodinium sp.)
- Psaf (29 kDa, Protein from Symbiodinium sp.)
- Pcpi-2 (15 kDa, Protein from Symbiodinium sp.)
- Pcpi-10 (27 kDa, Protein from Symbiodinium sp.)
Cryo-EM structure of the Photosystem I - LHCI supercomplex from Coelastrella sp.
Resolution: 2.81 Å
EM Method: Single-particle
Fitted PDBs: 8cmo
Q-score: 0.537
Fadeeva M, Klaiman D, Nelson N
To Be Published
- Chlorophyll b (907 Da, Ligand)
- Photosystem i p700 chlorophyll a apoprotein a1 psaa (82 kDa, Protein from Coelastrella)
- Chlorophyll a (893 Da, Ligand)
- Photosystem i reaction center subunit viii psai (4 kDa, Protein from Coelastrella)
- Photosystem i subunit ix psaj (4 kDa, Protein from Coelastrella)
- Coelastrella sp. photosystem i (900 kDa, Complex from Coelastrella)
- Chlorophyll a isomer (893 Da, Ligand)
- Lauric acid (200 Da, Ligand)
- (1~{s})-3,5,5-trimethyl-4-[(1~{e},3~{e},5~{e},7~{e},9~{e},11~{e},13~{e},15~{e},17~{e})-3,7,12,16-tetramethyl-18-[(4~{s})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenyl]cyclohex-3-en-1-ol (568 Da, Ligand)
- Light-harvesting protein of photosystem i lhca6 (24 kDa, Protein from Coelastrella)
- (3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Phosphatidylinositol (887 Da, Ligand)
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- Photosystem i reaction centre subunit xi psal (12 kDa, Protein from Coelastrella)
- Light-harvesting protein of photosystem i lhca9 (20 kDa, Protein from Coelastrella)
- Iron/sulfur cluster (351 Da, Ligand)
- Water (18 Da, Ligand)
- Photosystem i reaction center subunit iii psaf (17 kDa, Protein from Coelastrella)
- Photosystem i reaction center subunit iv psae (6 kDa, Protein from Coelastrella)
- Photosystem i reaction center subunit x psak (8 kDa, Protein from Coelastrella)
- Light-harvesting protein of photosystem i lhca8 (22 kDa, Protein from Coelastrella)
- Light-harvesting protein of photosystem i lhca1 (20 kDa, Protein from Coelastrella)
- Light-harvesting protein of photosystem i lhca7 (24 kDa, Protein from Coelastrella)
- Calcium ion (40 Da, Ligand)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Photosystem i reaction center subunit ii psad (16 kDa, Protein from Coelastrella)
- Light-harvesting protein of photosystem i lhca2 partial (7 kDa, Protein from Coelastrella)
- Light-harvesting protein of photosystem i lhca5 (24 kDa, Protein from Coelastrella)
- Octanoic acid (caprylic acid) (144 Da, Ligand)
- Photosystem i subunit vii psac (8 kDa, Protein from Coelastrella)
- Sphingosine (299 Da, Ligand)
- Light-harvesting protein of photosystem i lhca4 (22 kDa, Protein from Coelastrella)
- Beta-carotene (536 Da, Ligand)
- (2r)-2-hydroxy-3-(phosphonooxy)propyl (9e)-octadec-9-enoate (436 Da, Ligand)
- Photosystem i reaction center subunit v psag (9 kDa, Protein from Coelastrella)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Photosystem i p700 chlorophyll a apoprotein a2 psab (81 kDa, Protein from Coelastrella)
- Phylloquinone (450 Da, Ligand)
- Diacyl glycerol (625 Da, Ligand)
- 1,2-diacyl-glycerol-3-sn-phosphate (704 Da, Ligand)
- (2s)-3-{[(r)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-hydroxypropyl hexadecanoate (453 Da, Ligand)
- Light-harvesting protein of photosystem i lhca3 (23 kDa, Protein from Coelastrella)
- Dodecyl-beta-d-maltoside (510 Da, Ligand)
- (3r)-beta,beta-caroten-3-ol (552 Da, Ligand)
PSI-AcpPCI supercomplex from Amphidinium carterae
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 8jw0
Q-score: 0.51
Li X, Li Z, Wang F, Zhao S, Xu C, Mao Z, Duan J, Feng Y, Yang Y, Shen L, Wang G, Yang Y, Yu LJ, Sang M, Han G, Wang X, Kuang T, Shen JR, Wang W
PNAS (2024) 121 pp. e2315476121-e2315476121 [ DOI: doi:10.1073/pnas.2315476121 Pubmed: 38319970 ]
- Photosystem i psai (14 kDa, Protein from Amphidinium carterae)
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-5, acppci-5 (20 kDa, Protein from Amphidinium carterae)
- Chlorophyll a (893 Da, Ligand)
- Peridinin (630 Da, Ligand)
- (3s,3'r,5r,6s,7cis)-7',8'-didehydro-5,6-dihydro-5,6-epoxy-beta,beta-carotene-3,3'-diol (582 Da, Ligand)
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-10, acppci-10 (19 kDa, Protein from Amphidinium carterae)
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-2, acppci-2 (19 kDa, Protein from Amphidinium carterae)
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-4, acppci-4 (18 kDa, Protein from Amphidinium carterae)
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-8, acppci-8 (23 kDa, Protein from Amphidinium carterae)
- Photosystem i psal (27 kDa, Protein from Amphidinium carterae)
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-13, acppci-13 (17 kDa, Protein from Amphidinium carterae)
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-9, acppci-9 (17 kDa, Protein from Amphidinium carterae)
- Photosystem i psab (67 kDa, Protein from Amphidinium carterae)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Photosystem i psae (8 kDa, Protein from Amphidinium carterae)
- Photosystem i psam (9 kDa, Protein from Amphidinium carterae)
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-1, acppci-1 (15 kDa, Protein from Amphidinium carterae)
- Iron/sulfur cluster (351 Da, Ligand)
- Photosystem i psaa (70 kDa, Protein from Amphidinium carterae)
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-7, acppci-7 (21 kDa, Protein from Amphidinium carterae)
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-3, acppci-3 (18 kDa, Protein from Amphidinium carterae)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Psi-acppci supercomplex from amphidinium carterae (Complex from Amphidinium carterae)
- Chlorophyll c1 (610 Da, Ligand)
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-6, acppci-6 (19 kDa, Protein from Amphidinium carterae)
- Photosystem i psac (9 kDa, Protein from Amphidinium carterae)
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-11, acppci-11 (19 kDa, Protein from Amphidinium carterae)
- [(1~{s},5~{r})-3,3,5-trimethyl-5-oxidanyl-4-[(3~{e},5~{e},7~{e},9~{e},11~{e},13~{e},15~{e},17~{e})-3,7,12,16-tetramethyl-18-[(1~{s},4~{s},6~{r})-2,2,6-trimethyl-4-oxidanyl-7-oxabicyclo[4.1.0]heptan-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenylidene]cyclohexyl] ethanoate (642 Da, Ligand)
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-15, acppci-15 (17 kDa, Protein from Amphidinium carterae)
- Beta-carotene (536 Da, Ligand)
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-14, acppci-14 (17 kDa, Protein from Amphidinium carterae)
- Photosystem i psaf (20 kDa, Protein from Amphidinium carterae)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-16, acppci-16 (17 kDa, Protein from Amphidinium carterae)
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-17, acppci-17 (17 kDa, Protein from Amphidinium carterae)
- Photosystem i psad (28 kDa, Protein from Amphidinium carterae)
- Photosystem i psaj (7 kDa, Protein from Amphidinium carterae)
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-12, acppci-12 (17 kDa, Protein from Amphidinium carterae)
- Phylloquinone (450 Da, Ligand)
- Photosystem i psar (14 kDa, Protein from Amphidinium carterae)
PSI-AcpPCI supercomplex from Symbiodinium
Resolution: 2.99 Å
EM Method: Single-particle
Fitted PDBs: 8jze
Q-score: 0.518
Li X, Li Z, Wang F, Zhao S, Xu C, Mao Z, Duan J, Feng Y, Yang Y, Shen L, Wang G, Yang Y, Yu LJ, Sang M, Han G, Wang X, Kuang T, Shen JR, Wang W
PNAS (2024) 121 pp. e2315476121-e2315476121 [ DOI: doi:10.1073/pnas.2315476121 Pubmed: 38319970 ]
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-13, acppci-13 (17 kDa, Protein from Symbiodinium)
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-15, acppci-15 (17 kDa, Protein from Symbiodinium)
- Photosystem i psaa (75 kDa, Protein from Symbiodinium)
- Photosystem i psab (74 kDa, Protein from Symbiodinium)
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-5, acppci-5 (20 kDa, Protein from Symbiodinium)
- Chlorophyll a (893 Da, Ligand)
- Peridinin (630 Da, Ligand)
- (3s,3'r,5r,6s,7cis)-7',8'-didehydro-5,6-dihydro-5,6-epoxy-beta,beta-carotene-3,3'-diol (582 Da, Ligand)
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-12, acppci-12 (17 kDa, Protein from Symbiodinium)
- Photosystem i psaj (11 kDa, Protein from Symbiodinium)
- Photosystem i unk (11 kDa, Protein from Symbiodinium)
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-14, acppci-14 (17 kDa, Protein from Symbiodinium)
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-11, acppci-11 (21 kDa, Protein from Symbiodinium)
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-10, acppci-10 (20 kDa, Protein from Symbiodinium)
- Photosystem i psac (9 kDa, Protein from Symbiodinium)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-7, acppci-7 (21 kDa, Protein from Symbiodinium)
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-9, acppci-9 (17 kDa, Protein from Symbiodinium)
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-2, acppci-2 (19 kDa, Protein from Symbiodinium)
- Iron/sulfur cluster (351 Da, Ligand)
- Photosystem i psar (15 kDa, Protein from Symbiodinium)
- Photosystem i psae (8 kDa, Protein from Symbiodinium)
- Photosystem i psal (27 kDa, Protein from Symbiodinium)
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-3, acppci-3 (22 kDa, Protein from Symbiodinium)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Photosystem i psam (8 kDa, Protein from Symbiodinium)
- Chlorophyll c1 (610 Da, Ligand)
- Photosystem i unk (6 kDa, Protein from Symbiodinium)
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-6, acppci-6 (19 kDa, Protein from Symbiodinium)
- Photosystem i psaf (20 kDa, Protein from Symbiodinium)
- [(1~{s},5~{r})-3,3,5-trimethyl-5-oxidanyl-4-[(3~{e},5~{e},7~{e},9~{e},11~{e},13~{e},15~{e},17~{e})-3,7,12,16-tetramethyl-18-[(1~{s},4~{s},6~{r})-2,2,6-trimethyl-4-oxidanyl-7-oxabicyclo[4.1.0]heptan-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenylidene]cyclohexyl] ethanoate (642 Da, Ligand)
- Psi-acppci supercomplex from symbiodinium (Complex from Symbiodinium)
- Beta-carotene (536 Da, Ligand)
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-4, acppci-4 (19 kDa, Protein from Symbiodinium)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-8, acppci-8 (24 kDa, Protein from Symbiodinium)
- Photosystem i psad (24 kDa, Protein from Symbiodinium)
- Phylloquinone (450 Da, Ligand)
- Photosystem i psai (13 kDa, Protein from Symbiodinium)
PSI-AcpPCI supercomplex from Symbiodinium
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 8jzf
Q-score: 0.537
Li X, Li Z, Wang F, Zhao S, Xu C, Mao Z, Duan J, Feng Y, Yang Y, Shen L, Wang G, Yang Y, Yu LJ, Sang M, Han G, Wang X, Kuang T, Shen JR, Wang W
PNAS (2024) 121 pp. e2315476121-e2315476121 [ DOI: doi:10.1073/pnas.2315476121 Pubmed: 38319970 ]
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-13, acppci-13 (17 kDa, Protein from Symbiodinium)
- Photosystem i psaa (75 kDa, Protein from Symbiodinium)
- Photosystem i psab (74 kDa, Protein from Symbiodinium)
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-5, acppci-5 (20 kDa, Protein from Symbiodinium)
- Chlorophyll a (893 Da, Ligand)
- Peridinin (630 Da, Ligand)
- (3s,3'r,5r,6s,7cis)-7',8'-didehydro-5,6-dihydro-5,6-epoxy-beta,beta-carotene-3,3'-diol (582 Da, Ligand)
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-12, acppci-12 (17 kDa, Protein from Symbiodinium)
- Photosystem i psaj (11 kDa, Protein from Symbiodinium)
- Photosystem i unk (11 kDa, Protein from Symbiodinium)
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-11, acppci-11 (21 kDa, Protein from Symbiodinium)
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-10, acppci-10 (20 kDa, Protein from Symbiodinium)
- Photosystem i psac (9 kDa, Protein from Symbiodinium)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-7, acppci-7 (21 kDa, Protein from Symbiodinium)
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-9, acppci-9 (17 kDa, Protein from Symbiodinium)
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-2, acppci-2 (19 kDa, Protein from Symbiodinium)
- Iron/sulfur cluster (351 Da, Ligand)
- Photosystem i psar (15 kDa, Protein from Symbiodinium)
- Photosystem i psae (8 kDa, Protein from Symbiodinium)
- Photosystem i psal (27 kDa, Protein from Symbiodinium)
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-3, acppci-3 (22 kDa, Protein from Symbiodinium)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Photosystem i psam (8 kDa, Protein from Symbiodinium)
- Chlorophyll c1 (610 Da, Ligand)
- Photosystem i unk (6 kDa, Protein from Symbiodinium)
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-6, acppci-6 (19 kDa, Protein from Symbiodinium)
- Photosystem i psaf (20 kDa, Protein from Symbiodinium)
- [(1~{s},5~{r})-3,3,5-trimethyl-5-oxidanyl-4-[(3~{e},5~{e},7~{e},9~{e},11~{e},13~{e},15~{e},17~{e})-3,7,12,16-tetramethyl-18-[(1~{s},4~{s},6~{r})-2,2,6-trimethyl-4-oxidanyl-7-oxabicyclo[4.1.0]heptan-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenylidene]cyclohexyl] ethanoate (642 Da, Ligand)
- Psi-acppci supercomplex from symbiodinium (Complex from Symbiodinium)
- Beta-carotene (536 Da, Ligand)
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-4, acppci-4 (19 kDa, Protein from Symbiodinium)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-8, acppci-8 (24 kDa, Protein from Symbiodinium)
- Photosystem i psad (24 kDa, Protein from Symbiodinium)
- Phylloquinone (450 Da, Ligand)
- Photosystem i psai (13 kDa, Protein from Symbiodinium)
PSI-LHCI-LHCII-Lhcb9 supercomplex of Physcomitrella patens
Resolution: 2.68 Å
EM Method: Single-particle
Fitted PDBs: 7xqp
Q-score: 0.536
Zhang S, Tang K, Yan Q, Li X, Shen L, Wang W, He YK, Kuang T, Han G, Shen JR, Zhang X
Nat Plants (2023) 9 pp. 832-846 [ Pubmed: 37095225 DOI: doi:10.1038/s41477-023-01401-4 ]
- Psao (9 kDa, Protein from Physcomitrium patens)
- Psi subunit v (17 kDa, Protein from Physcomitrium patens)
- Chlorophyll b (907 Da, Ligand)
- Chlorophyll a (893 Da, Ligand)
- (1r,3r)-6-{(3e,5e,7e,9e,11e,13e,15e,17e)-18-[(1s,4r,6r)-4-hydroxy-2,2,6-trimethyl-7-oxabicyclo[4.1.0]hept-1-yl]-3,7,12,16-tetramethyloctadeca-1,3,5,7,9,11,13,15,17-nonaenylidene}-1,5,5-trimethylcyclohexane-1,3-diol (600 Da, Ligand)
- Predicted protein psad (15 kDa, Protein from Physcomitrium patens)
- Psi-f (17 kDa, Protein from Physcomitrium patens)
- (3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Photosystem i p700 chlorophyll a apoprotein a1 (82 kDa, Protein from Physcomitrium patens)
- Photosystem i iron-sulfur center (8 kDa, Protein from Physcomitrium patens)
- Psak (8 kDa, Protein from Physcomitrium patens)
- Iron/sulfur cluster (351 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (24 kDa, Protein from Physcomitrium patens)
- Chlorophyll a-b binding protein, chloroplastic (23 kDa, Protein from Physcomitrium patens)
- (3s,5r,6s,3's,5'r,6's)-5,6,5',6'-diepoxy-5,6,5',6'- tetrahydro-beta,beta-carotene-3,3'-diol (600 Da, Ligand)
- Psae (6 kDa, Protein from Physcomitrium patens)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Photosystem i reaction center subunit viii (3 kDa, Protein from Physcomitrium patens)
- Psi-lhci-lhcii-lhcb9 supercomplex of physcomitrella patens (Complex from Physcomitrium patens)
- Psi-g (10 kDa, Protein from Physcomitrium patens)
- Photosystem i reaction center subunit xii (3 kDa, Protein from Physcomitrium patens)
- Chlorophyll a-b binding protein, chloroplastic (20 kDa, Protein from Physcomitrium patens)
- Chlorophyll a-b binding protein, chloroplastic (24 kDa, Protein from Physcomitrium patens)
- Chlorophyll a-b binding protein, chloroplastic (23 kDa, Protein from Physcomitrium patens)
- Psah photosystem i reaction center subunit (10 kDa, Protein from Physcomitrium patens)
- Photosystem i reaction center subunit ix (4 kDa, Protein from Physcomitrium patens)
- Beta-carotene (536 Da, Ligand)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Phylloquinone (450 Da, Ligand)
- Dodecyl-alpha-d-maltoside (510 Da, Ligand)
- Photosystem i p700 chlorophyll a apoprotein a2 (82 kDa, Protein from Physcomitrium patens)
- Chlorophyll a-b binding protein, chloroplastic (22 kDa, Protein from Physcomitrium patens)
The Structure of the moss PSI-LHCI reveals the evolution of the LHCI antenna
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 7ksq
Q-score: 0.544
Gorski C, Riddle R, Toporik H, Da Z, Dobson Z, Williams D, Mazor Y
Nat Plants (2022) 8 pp. 307-316 [ DOI: doi:10.1038/s41477-022-01099-w Pubmed: 35190662 ]
- Chlorophyll b (907 Da, Ligand)
- Chlorophyll a (893 Da, Ligand)
- Chlorophyll a isomer (893 Da, Ligand)
- Photosystem i p700 chlorophyll a apoprotein a2 (82 kDa, Protein from Physcomitrium patens)
- Photosystem i reaction center subunit xii (3 kDa, Protein from Physcomitrium patens)
- Psi-g (9 kDa, Protein from Physcomitrium patens)
- Chlorophyll a-b binding protein, chloroplastic (22 kDa, Protein from Physcomitrium patens)
- Psi subunit v (16 kDa, Protein from Physcomitrium patens)
- Psi-f (17 kDa, Protein from Physcomitrium patens)
- (3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Photosystem i p700 chlorophyll a apoprotein a1 (82 kDa, Protein from Physcomitrium patens)
- Photosystem i iron-sulfur center (8 kDa, Protein from Physcomitrium patens)
- Chlorophyll a-b binding protein, chloroplastic (23 kDa, Protein from Physcomitrium patens)
- Psae (7 kDa, Protein from Physcomitrium patens)
- Psad (15 kDa, Protein from Physcomitrium patens)
- Iron/sulfur cluster (351 Da, Ligand)
- Water (18 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (22 kDa, Protein from Physcomitrium patens)
- Chlorophyll a-b binding protein, chloroplastic (20 kDa, Protein from Physcomitrium patens)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Psak (8 kDa, Protein from Physcomitrium patens)
- Photosystem i reaction center subunit viii (3 kDa, Protein from Physcomitrium patens)
- Psao (9 kDa, Protein from Physcomitrium patens)
- Beta-carotene (536 Da, Ligand)
- Photosystem i reaction center subunit ix (4 kDa, Protein from Physcomitrium patens)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Psi (Complex from Physcomitrium patens)
- Phylloquinone (450 Da, Ligand)
- Dodecyl-beta-d-maltoside (510 Da, Ligand)
- Psah (9 kDa, Protein from Physcomitrium patens)
The Structure of the moss PSI-LHCI reveals the evolution of the LHCI antenna
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 7kux
Q-score: 0.546
Gorski C, Riddle R, Toporik H, Da Z, Dobson Z, Williams D, Mazor Y
Nat Plants (2022) 8 pp. 307-316 [ DOI: doi:10.1038/s41477-022-01099-w Pubmed: 35190662 ]
- Chlorophyll b (907 Da, Ligand)
- Chlorophyll a (893 Da, Ligand)
- Chlorophyll a isomer (893 Da, Ligand)
- Photosystem i p700 chlorophyll a apoprotein a2 (82 kDa, Protein from Physcomitrium patens)
- Photosystem i reaction center subunit xii (3 kDa, Protein from Physcomitrium patens)
- Psi-g (9 kDa, Protein from Physcomitrium patens)
- Chlorophyll a-b binding protein, chloroplastic (22 kDa, Protein from Physcomitrium patens)
- Psi subunit v (16 kDa, Protein from Physcomitrium patens)
- Psi-f (17 kDa, Protein from Physcomitrium patens)
- (3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Photosystem i p700 chlorophyll a apoprotein a1 (82 kDa, Protein from Physcomitrium patens)
- Photosystem i iron-sulfur center (8 kDa, Protein from Physcomitrium patens)
- Chlorophyll a-b binding protein, chloroplastic (23 kDa, Protein from Physcomitrium patens)
- Psae (7 kDa, Protein from Physcomitrium patens)
- Psad (15 kDa, Protein from Physcomitrium patens)
- Iron/sulfur cluster (351 Da, Ligand)
- Water (18 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (22 kDa, Protein from Physcomitrium patens)
- Chlorophyll a-b binding protein, chloroplastic (20 kDa, Protein from Physcomitrium patens)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Psak (8 kDa, Protein from Physcomitrium patens)
- Photosystem i reaction center subunit viii (3 kDa, Protein from Physcomitrium patens)
- Beta-carotene (536 Da, Ligand)
- Photosystem i reaction center subunit ix (4 kDa, Protein from Physcomitrium patens)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Psi (Complex from Physcomitrium patens)
- Phylloquinone (450 Da, Ligand)
- Dodecyl-beta-d-maltoside (510 Da, Ligand)
- Psah (9 kDa, Protein from Physcomitrium patens)
PSI-LHCI Supercomplex from Physcometrella patens
Resolution: 3.23 Å
EM Method: Single-particle
Fitted PDBs: 6l35
Q-score: 0.545
Yan Q, Zhao L, Wang W, Pi X, Han G, Wang J, Cheng L, He YK, Kuang T, Qin X, Sui SF, Shen JR
Cell Discov (2021) 7 pp. 10-10 [ DOI: doi:10.1038/s41421-021-00242-9 Pubmed: 33589616 ]
- Chlorophyll b (907 Da, Ligand)
- Iron/sulfur cluster (351 Da, Ligand)
- Chlorophyll a (893 Da, Ligand)
- Psi-lhci (Complex from Physcomitrella patens)
- Chlorophyll a-b binding protein, chloroplastic (20 kDa, Protein from Moss)
- Psak (7 kDa, Protein from Moss)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Photosystem i iron-sulfur center (8 kDa, Protein from Moss)
- Psae (6 kDa, Protein from Moss)
- (3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Photosystem i reaction center subunit viii (3 kDa, Protein from Moss)
- Psah photosystem i reaction center subunit (9 kDa, Protein from Moss)
- Photosystem i reaction center subunit ix (4 kDa, Protein from Moss)
- Psi subunit v (16 kDa, Protein from Moss)
- Photosystem i p700 chlorophyll a apoprotein a1 (82 kDa, Protein from Moss)
- (3s,5r,6s,3's,5'r,6's)-5,6,5',6'-diepoxy-5,6,5',6'- tetrahydro-beta,beta-carotene-3,3'-diol (600 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (23 kDa, Protein from Moss)
- Predicted protein psad (15 kDa, Protein from Moss)
- Predicted protein psag (10 kDa, Protein from Moss)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Psi-f (17 kDa, Protein from Moss)
- Chlorophyll a-b binding protein, chloroplastic (22 kDa, Protein from Moss)
- Photosystem i reaction center subunit xii (3 kDa, Protein from Moss)
- Beta-carotene (536 Da, Ligand)
- Phylloquinone (450 Da, Ligand)
- Photosystem i p700 chlorophyll a apoprotein a2 (82 kDa, Protein from Moss)
- Chlorophyll a-b binding protein, chloroplastic (22 kDa, Protein from Moss)
Organization and energy transfer in a huge diatom PSI-FCPI supercomplex
Resolution: 2.38 Å
EM Method: Single-particle
Fitted PDBs: 6ly5
Q-score: 0.517
Xu C, Pi X, Huang Y, Han G, Chen X, Qin X, Huang G, Zhao S, Yang Y, Kuang T, Wang W, Sui SF, Shen JR
Nat Commun (2020) 11 pp. 5081-5081 [ DOI: doi:10.1038/s41467-020-18867-x Pubmed: 33033236 ]
- Psaj (4 kDa, Protein from Chaetoceros gracilis)
- Psac (8 kDa, Protein from Chaetoceros gracilis)
- Iron/sulfur cluster (351 Da, Ligand)
- Psaa (82 kDa, Protein from Chaetoceros gracilis)
- Chlorophyll a (893 Da, Ligand)
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- (3s,3'r,5r,6s,7cis)-7',8'-didehydro-5,6-dihydro-5,6-epoxy-beta,beta-carotene-3,3'-diol (582 Da, Ligand)
- Fcpi (21 kDa, Protein from Chaetoceros gracilis)
- Fcpi-23 (27 kDa, Protein from Chaetoceros gracilis)
- Fcpi-12 (22 kDa, Protein from Chaetoceros gracilis)
- Psae (7 kDa, Protein from Chaetoceros gracilis)
- A huge diatom psi-fcpi supercomplex (Complex from Chaetoceros gracilis)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Fcpi-19 (19 kDa, Protein from Chaetoceros gracilis)
- Fcpi-2 (17 kDa, Protein from Chaetoceros gracilis)
- Fcpi-11 (21 kDa, Protein from Chaetoceros gracilis)
- Fcpi-10 (21 kDa, Protein from Chaetoceros gracilis)
- Fcpi-8 (23 kDa, Protein from Chaetoceros gracilis)
- Fcpi-9 (21 kDa, Protein from Chaetoceros gracilis)
- Psai (4 kDa, Protein from Chaetoceros gracilis)
- Psam (3 kDa, Protein from Chaetoceros gracilis)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Psaf (17 kDa, Protein from Chaetoceros gracilis)
- Fcpi-16 (32 kDa, Protein from Chaetoceros gracilis)
- Psal (19 kDa, Protein from Chaetoceros gracilis)
- Fcpi-3 (21 kDa, Protein from Chaetoceros gracilis)
- Fcpi-7 (18 kDa, Protein from Chaetoceros gracilis)
- Water (18 Da, Ligand)
- Fcpi-21 (24 kDa, Protein from Chaetoceros gracilis)
- Psar (14 kDa, Protein from Chaetoceros gracilis)
- Fcpi-17 (21 kDa, Protein from Chaetoceros gracilis)
- Psab (82 kDa, Protein from Chaetoceros gracilis)
- Psad (14 kDa, Protein from Chaetoceros gracilis)
- Fcpi-5 (23 kDa, Protein from Chaetoceros gracilis)
- Chlorophyll c1 (610 Da, Ligand)
- Fcpi-14 (24 kDa, Protein from Chaetoceros gracilis)
- Psas (11 kDa, Protein from Chaetoceros gracilis)
- Fcpi-24 (26 kDa, Protein from Chaetoceros gracilis)
- Fcpi-1 (24 kDa, Protein from Chaetoceros gracilis)
- Fcpi-6 (22 kDa, Protein from Chaetoceros gracilis)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Fcpi-4 (26 kDa, Protein from Chaetoceros gracilis)
- Fcpi-13 (22 kDa, Protein from Chaetoceros gracilis)
- Beta-carotene (536 Da, Ligand)
- Phylloquinone (450 Da, Ligand)
- Dodecyl-beta-d-maltoside (510 Da, Ligand)
- (3s,3's,5r,5'r,6s,6'r,8'r)-3,5'-dihydroxy-8-oxo-6',7'-didehydro-5,5',6,6',7,8-hexahydro-5,6-epoxy-beta,beta-caroten-3'- yl acetate (658 Da, Ligand)