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sample_name:"Pre-rRNA-processing protein IPI3"

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EMD-17957

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Chaetomium thermophilum pre-60S State 4 - post-5S rotation with Rix1 complex without Foot - composite structure

Release date: Jan. 10, 2024
Resolution: 2.91 Å
EM Method: Single-particle
Fitted PDBs: 8pv8
Q-score: 0.559

Thoms M, Lau B, Cheng J, Fromm L, Denk T, Kellner N, Flemming D, Fischer P, Falquet L, Berninghausen O, Beckmann R, Hurt E

EMBO Rep (2023) 24 pp. e57984-e57984 [ Pubmed: 37921038 DOI: doi:10.15252/embr.202357984 ]

Sample:

60s ribosomal protein l38-like protein (9 kDa, Protein from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l33-like protein (12 kDa, Protein from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l7-like protein (28 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Putative 60s ribosomal protein (13 kDa, Protein from Thermochaetoides thermophila DSM 1495)
5.8s rrna (50 kDa, RNA from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l2-like protein (27 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Ribosome biogenesis protein nsa2 homolog (29 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Chaetomium thermophilum pre-60s state 2 - pre-5s rotation with rix1 complex - composite structure (Complex)
60s ribosomal protein l9-like protein (21 kDa, Protein from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l26-like protein (15 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Pre-rrna-processing protein ipi3 (47 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Rrna-processing protein (14 kDa, Protein from Thermochaetoides thermophila DSM 1495)
5s rrna (38 kDa, RNA from Thermochaetoides thermophila DSM 1495)
Zinc ion (65 Da, Ligand)
60s ribosomal protein l28-like protein (16 kDa, Protein from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l36 (12 kDa, Protein from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l16-like protein (22 kDa, Protein from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l3-like protein (44 kDa, Protein from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l12-like protein (17 kDa, Protein from Thermochaetoides thermophila DSM 1495)
26s rrna (1 MDa, RNA from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l4-like protein (39 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Putative 60s ribosomal protein (15 kDa, Protein from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l41-a (3 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Ribosome biogenesis protein rlp24 (26 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Guanosine-5'-triphosphate (523 Da, Ligand)
Ribosomal protein el39 (6 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Nucleolar gtp-binding protein 2 (70 kDa, Protein from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l43-like protein (10 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Nucleolar gtp-binding protein 1 (75 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Water (18 Da, Ligand)
Protein sda1 (86 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Ribosomal protein l18-like protein (24 kDa, Protein from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l32-like protein (15 kDa, Protein from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l29 (7 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Pre-rrna-processing protein ipi1 (37 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Putative ribosomal protein (20 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Duf2423 domain-containing protein (13 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Putative gtp binding protein (61 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Ribosome assembly protein 4 (Complex from Thermochaetoides thermophila DSM 1495)
Dolichyl-diphosphooligosaccharide--protein glycotransferase (105 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Ribosomal protein l15 (24 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Ribosomal protein l19 (317 kDa, Protein from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l6 (22 kDa, Protein from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l27 (15 kDa, Protein from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l30-like protein (11 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Ribosomal protein l34-like protein (13 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Ribosomal protein l37 (10 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Eukaryotic translation initiation factor 6 (26 kDa, Protein from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l8 (29 kDa, Protein from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l17-like protein (21 kDa, Protein from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l13 (24 kDa, Protein from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l14-like protein (16 kDa, Protein from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l22-like protein (14 kDa, Protein from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l23-like protein (14 kDa, Protein from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l25-like protein (17 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Magnesium ion (24 Da, Ligand)
60s ribosomal protein l20 (20 kDa, Protein from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l5-like protein (35 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Zinc finger domain-containing protein (13 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Ribosome assembly protein 4 (57 kDa, Protein from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l21-like protein (18 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Ribosome (Complex from Thermochaetoides thermophila DSM 1495)
Ribosomal protein (24 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Large ribosomal subunit protein ul10 (30 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Pre-rrna-processing protein rix1 (84 kDa, Protein from Thermochaetoides thermophila DSM 1495)

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EMD-17879

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Chaetomium thermophilum Rix1-complex

Release date: Nov. 15, 2023
Resolution: 2.91 Å
EM Method: Single-particle
Fitted PDBs: 8ptw
Q-score: 0.549

Thoms M, Lau B, Cheng J, Fromm L, Denk T, Kellner N, Flemming D, Fischer P, Falquet L, Berninghausen O, Beckmann R, Hurt E

EMBO Rep (2023) 24 pp. e57984-e57984 [ Pubmed: 37921038 DOI: doi:10.15252/embr.202357984 ]

Sample:

Pre-rrna-processing protein ipi3 (47 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Chaetomium thermophilum rix1-complex (Complex from Thermochaetoides thermophila DSM 1495)
Pre-rrna-processing protein rix1 (84 kDa, Protein from Thermochaetoides thermophila DSM 1495)

EMD-17953

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Chaetomium thermophilum pre-60S State 2 - pre-5S rotation with Rix1 complex - composite structure

Release date: Nov. 15, 2023
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 8pv4
Q-score: 0.535

Thoms M, Lau B, Cheng J, Fromm L, Denk T, Kellner N, Flemming D, Fischer P, Falquet L, Berninghausen O, Beckmann R, Hurt E

EMBO Rep (2023) 24 pp. e57984-e57984 [ Pubmed: 37921038 DOI: doi:10.15252/embr.202357984 ]

Sample:

60s ribosomal protein l33-like protein (12 kDa, Protein from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l7-like protein (28 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Putative 60s ribosomal protein (13 kDa, Protein from Thermochaetoides thermophila DSM 1495)
5.8s rrna (50 kDa, RNA from Thermochaetoides thermophila DSM 1495)
Pre-rrna-processing protein ipi3 (47 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Ribosome biogenesis protein nsa2 homolog (29 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Chaetomium thermophilum pre-60s state 2 - pre-5s rotation with rix1 complex - composite structure (Complex)
Pescadillo homolog (77 kDa, Protein from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l2-like protein (27 kDa, Protein from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l26-like protein (15 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Ribosomal protein (24 kDa, Protein from Thermochaetoides thermophila DSM 1495)
5s rrna (38 kDa, RNA from Thermochaetoides thermophila DSM 1495)
Rrna-processing protein (14 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Zinc ion (65 Da, Ligand)
60s ribosomal protein l9-like protein (25 kDa, Protein from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l28-like protein (16 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Putative rna-binding protein (45 kDa, Protein from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l36 (12 kDa, Protein from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l16-like protein (22 kDa, Protein from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l3-like protein (44 kDa, Protein from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l12-like protein (17 kDa, Protein from Thermochaetoides thermophila DSM 1495)
26s rrna (1 MDa, RNA from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l4-like protein (39 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Putative 60s ribosomal protein (15 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Ribosome biogenesis protein rlp24 (26 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Guanosine-5'-triphosphate (523 Da, Ligand)
Ribosomal protein el39 (6 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Nucleolar gtp-binding protein 2 (70 kDa, Protein from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l43-like protein (10 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Nucleolar gtp-binding protein 1 (75 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Water (18 Da, Ligand)
Protein sda1 (86 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Ribosomal protein l18-like protein (24 kDa, Protein from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l32-like protein (15 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Ribosome biogenesis regulatory protein (22 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Pre-rrna-processing protein ipi1 (37 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Putative ribosomal protein (20 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Its2 (52 kDa, RNA from Thermochaetoides thermophila DSM 1495)
Duf2423 domain-containing protein (13 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Putative gtp binding protein (61 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Ribosome assembly protein 4 (Complex from Thermochaetoides thermophila DSM 1495)
Dolichyl-diphosphooligosaccharide--protein glycotransferase (105 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Ribosomal protein l15 (24 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Ribosomal protein l19 (317 kDa, Protein from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l6 (22 kDa, Protein from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l27 (15 kDa, Protein from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l30-like protein (11 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Ribosomal protein l34-like protein (13 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Ribosomal protein l37 (10 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Eukaryotic translation initiation factor 6 (26 kDa, Protein from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l8 (29 kDa, Protein from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l38-like protein (10 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Utp30 (43 kDa, Protein from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l13 (24 kDa, Protein from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l14-like protein (16 kDa, Protein from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l17-like protein (21 kDa, Protein from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l22-like protein (14 kDa, Protein from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l23-like protein (14 kDa, Protein from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l25-like protein (17 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Magnesium ion (24 Da, Ligand)
60s ribosomal protein l5-like protein (35 kDa, Protein from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l20 (20 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Zinc finger domain-containing protein (13 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Ribosome assembly protein 4 (57 kDa, Protein from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l21-like protein (18 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Ribosome (Complex from Thermochaetoides thermophila DSM 1495)
Ribosome biogenesis protein nop53 (50 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Large ribosomal subunit protein ul10 (30 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Ribosome production factor 2 homolog (39 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Pre-rrna-processing protein rix1 (84 kDa, Protein from Thermochaetoides thermophila DSM 1495)

[Show more]

EMD-17955

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Chaetomium thermophilum pre-60S State 3 - post-5S rotation with Rix1 complex with Foot - composite structure

Release date: Nov. 15, 2023
Resolution: 2.94 Å
EM Method: Single-particle
Fitted PDBs: 8pv6
Q-score: 0.547

Thoms M, Lau B, Cheng J, Fromm L, Denk T, Kellner N, Flemming D, Fischer P, Falquet L, Berninghausen O, Beckmann R, Hurt E

EMBO Rep (2023) 24 pp. e57984-e57984 [ Pubmed: 37921038 DOI: doi:10.15252/embr.202357984 ]

Sample:

60s ribosomal protein l33-like protein (12 kDa, Protein from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l7-like protein (28 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Putative 60s ribosomal protein (13 kDa, Protein from Thermochaetoides thermophila DSM 1495)
5.8s rrna (50 kDa, RNA from Thermochaetoides thermophila DSM 1495)
Pre-rrna-processing protein ipi3 (47 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Ribosome biogenesis protein nsa2 homolog (29 kDa, Protein from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l2-like protein (27 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Pescadillo homolog (77 kDa, Protein from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l26-like protein (15 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Ribosomal protein (24 kDa, Protein from Thermochaetoides thermophila DSM 1495)
5s rrna (38 kDa, RNA from Thermochaetoides thermophila DSM 1495)
Rrna-processing protein (14 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Zinc ion (65 Da, Ligand)
60s ribosomal protein l9-like protein (25 kDa, Protein from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l28-like protein (16 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Putative rna-binding protein (45 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Chaetomium thermophilum pre-60s state 3 - post-5s rotation with rix1 complex with foot - composite structure (Complex)
60s ribosomal protein l16-like protein (22 kDa, Protein from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l36 (12 kDa, Protein from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l3-like protein (44 kDa, Protein from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l12-like protein (17 kDa, Protein from Thermochaetoides thermophila DSM 1495)
26s rrna (1 MDa, RNA from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l4-like protein (39 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Putative 60s ribosomal protein (15 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Ribosome biogenesis protein rlp24 (26 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Guanosine-5'-triphosphate (523 Da, Ligand)
Ribosomal protein el39 (6 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Nucleolar gtp-binding protein 2 (70 kDa, Protein from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l43-like protein (10 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Nucleolar gtp-binding protein 1 (75 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Water (18 Da, Ligand)
Protein sda1 (86 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Ribosomal protein l18-like protein (24 kDa, Protein from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l32-like protein (15 kDa, Protein from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l29 (7 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Pre-rrna-processing protein ipi1 (37 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Putative ribosomal protein (20 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Its2 (52 kDa, RNA from Thermochaetoides thermophila DSM 1495)
Duf2423 domain-containing protein (13 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Putative gtp binding protein (61 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Ribosome assembly protein 4 (Complex from Thermochaetoides thermophila DSM 1495)
Dolichyl-diphosphooligosaccharide--protein glycotransferase (105 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Ribosomal protein l15 (24 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Ribosomal protein l19 (317 kDa, Protein from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l6 (22 kDa, Protein from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l27 (15 kDa, Protein from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l30-like protein (11 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Ribosomal protein l34-like protein (13 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Ribosomal protein l37 (10 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Eukaryotic translation initiation factor 6 (26 kDa, Protein from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l8 (29 kDa, Protein from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l38-like protein (10 kDa, Protein from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l17-like protein (21 kDa, Protein from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l13 (24 kDa, Protein from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l14-like protein (16 kDa, Protein from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l22-like protein (14 kDa, Protein from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l23-like protein (14 kDa, Protein from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l25-like protein (17 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Magnesium ion (24 Da, Ligand)
60s ribosomal protein l5-like protein (35 kDa, Protein from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l20 (20 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Zinc finger domain-containing protein (13 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Ribosome assembly protein 4 (57 kDa, Protein from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l21-like protein (18 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Ribosome (Complex from Thermochaetoides thermophila DSM 1495)
Ribosome biogenesis protein nop53 (50 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Large ribosomal subunit protein ul10 (30 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Pre-rrna-processing protein rix1 (84 kDa, Protein from Thermochaetoides thermophila DSM 1495)

[Show more]

EMD-10836

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Rix1-Rea1 pre-60S particle - Rix1-subcomplex, body 3 (rigid body refinement)

Release date: July 29, 2020
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 6yle
Q-score: 0.496

Kater L, Mitterer V, Thoms M, Cheng J, Berninghausen O, Beckmann R, Hurt E

Mol Cell (2020) 79 pp. 615-628.e5 [ DOI: doi:10.1016/j.molcel.2020.06.032 Pubmed: 32668200 ]

Sample:

Rix1-rea1 pre-60s assembly particle - rix1-subcomplex (Complex from Saccharomyces cerevisiae)
Pre-rrna-processing protein ipi3 (61 kDa, Protein from Saccharomyces cerevisiae)
Pre-rrna-processing protein ipi1 (37 kDa, Protein from Saccharomyces cerevisiae)
Pre-rrna-processing protein rix1 (86 kDa, Protein from Saccharomyces cerevisiae)

[Show more]

EMD-10839

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Rix1-Rea1 pre-60S particle - full composite structure

Release date: July 29, 2020
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 6ylh
Q-score: 0.512

Kater L, Mitterer V, Thoms M, Cheng J, Berninghausen O, Beckmann R, Hurt E

Mol Cell (2020) 79 pp. 615-628.e5 [ DOI: doi:10.1016/j.molcel.2020.06.032 Pubmed: 32668200 ]

Sample:

Guanosine-5'-triphosphate (523 Da, Ligand)
60s ribosomal protein l26-a (14 kDa, Protein from Baker's yeast)
Eukaryotic translation initiation factor 6 (26 kDa, Protein from Baker's yeast)
60s ribosomal protein l11-a (19 kDa, Protein from Baker's yeast)
60s ribosomal protein l31-a (12 kDa, Protein from Baker's yeast)
Probable metalloprotease arx1 (65 kDa, Protein from Baker's yeast)
60s ribosomal protein l9-a (21 kDa, Protein from Baker's yeast)
Bud site selection protein 20 (18 kDa, Protein from Baker's yeast)
Nucleolar gtp-binding protein 2 (55 kDa, Protein from Baker's yeast)
Zinc ion (65 Da, Ligand)
Protein sda1 (86 kDa, Protein from Baker's yeast)
5s rrna (38 kDa, RNA from Baker's yeast)
60s ribosomal protein l20-a (20 kDa, Protein from Baker's yeast)
60s ribosomal protein l5 (33 kDa, Protein from Baker's yeast)
Pre-rrna-processing protein ipi1 (37 kDa, Protein from Baker's yeast)
Rix1-rea1 pre-60s assembly particle - composite structure of the entire particle (Complex from Saccharomyces cerevisiae)
60s ribosomal protein l7-a (27 kDa, Protein from Baker's yeast)
60s ribosomal protein l13-a (22 kDa, Protein from Baker's yeast)
60s ribosomal protein l17-a (20 kDa, Protein from Baker's yeast)
60s ribosomal protein l27-a (15 kDa, Protein from Baker's yeast)
60s ribosomal protein l34-a (13 kDa, Protein from Baker's yeast)
Ribosome biogenesis protein alb1 (19 kDa, Protein from Baker's yeast)
60s ribosomal protein l43-a (10 kDa, Protein from Baker's yeast)
60s ribosomal protein l18-a (20 kDa, Protein from Baker's yeast)
Ribosome assembly protein 4 (57 kDa, Protein from Baker's yeast)
Upf0642 protein ybl028c (12 kDa, Protein from Baker's yeast)
25s rrna (1 MDa, RNA from Baker's yeast)
Midasin (559 kDa, Protein from Baker's yeast)
60s ribosomal protein l35-a (13 kDa, Protein from Baker's yeast)
60s ribosomal protein l1-a (24 kDa, Protein from Baker's yeast)
Ribosome biogenesis protein nsa2 (29 kDa, Protein from Baker's yeast)
60s ribosomal protein l25 (15 kDa, Protein from Baker's yeast)
60s ribosomal protein l23-a (14 kDa, Protein from Baker's yeast)
60s ribosomal protein l19-a (21 kDa, Protein from Baker's yeast)
60s ribosomal protein l12-a (17 kDa, Protein from Baker's yeast)
60s ribosomal protein l16-a (22 kDa, Protein from Baker's yeast)
Pre-rrna-processing protein ipi3 (61 kDa, Protein from Baker's yeast)
60s ribosomal protein l32 (14 kDa, Protein from Baker's yeast)
60s ribosomal protein l21-a (18 kDa, Protein from Baker's yeast)
Rrna-processing protein cgr1 (14 kDa, Protein from Baker's yeast)
60s ribosomal protein l15-a (24 kDa, Protein from Baker's yeast)
60s ribosomal protein l22-a (13 kDa, Protein from Baker's yeast)
60s ribosomal protein l33-a (12 kDa, Protein from Baker's yeast)
60s ribosomal protein l36-a (11 kDa, Protein from Baker's yeast)
60s ribosomal protein l2-a (27 kDa, Protein from Baker's yeast)
Nuclear gtp-binding protein nug1 (57 kDa, Protein from Baker's yeast)
Ribosome assembly factor mrt4 (27 kDa, Protein from Baker's yeast)
Ribosome biogenesis protein rlp24 (24 kDa, Protein from Baker's yeast)
Pre-rrna-processing protein rix1 (86 kDa, Protein from Baker's yeast)
60s ribosomal protein l8-a (28 kDa, Protein from Baker's yeast)
60s ribosomal protein l3 (43 kDa, Protein from Baker's yeast)
Magnesium ion (24 Da, Ligand)
60s ribosomal protein l28 (16 kDa, Protein from Baker's yeast)
60s ribosomal protein l38 (8 kDa, Protein from Baker's yeast)
5.8s rrna (50 kDa, RNA from Baker's yeast)
60s ribosomal protein l6-a (20 kDa, Protein from Baker's yeast)
Nucleolar gtp-binding protein 1 (74 kDa, Protein from Baker's yeast)
60s ribosomal protein l37-a (9 kDa, Protein from Baker's yeast)
60s ribosomal protein l14-a (15 kDa, Protein from Baker's yeast)
60s ribosomal protein l30 (11 kDa, Protein from Baker's yeast)
60s ribosomal protein l4-a (39 kDa, Protein from Baker's yeast)
60s ribosomal protein l39 (6 kDa, Protein from Baker's yeast)

[Show more]

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EMDB [6]

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