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Cryo-EM structure of the Arabidopsis thaliana photosystem I(PSI-LHCII-ST2)
Resolution: 2.79 Å
EM Method: Single-particle
Fitted PDBs: 8j6z
Q-score: 0.587
Wu J, Chen S, Wang C, Lin W, Huang C, Fan C, Han D, Lu D, Xu X, Sui S, Zhang L
Mol Plant (2023) 16 pp. 1937-1950 [ Pubmed: 37936349 DOI: doi:10.1016/j.molp.2023.11.002 ]
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Chlorophyll a-b binding protein 6, chloroplastic (26 kDa, Protein from Arabidopsis thaliana)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Chlorophyll a isomer (893 Da, Ligand)
- Photosystem i chlorophyll a/b-binding protein 2, chloroplastic (27 kDa, Protein from Arabidopsis thaliana)
- Photosystem i reaction center subunit iv a, chloroplastic (14 kDa, Protein from Arabidopsis thaliana)
- Photosystem i reaction center subunit xi, chloroplastic (23 kDa, Protein from Arabidopsis thaliana)
- Chlorophyll a-b binding protein 4, chloroplastic (27 kDa, Protein from Arabidopsis thaliana)
- Photosystem i reaction center subunit psak, chloroplastic (13 kDa, Protein from Arabidopsis thaliana)
- Photosystem i reaction center subunit viii (4 kDa, Protein from Arabidopsis thaliana)
- Chlorophyll a-b binding protein 2, chloroplastic (28 kDa, Protein from Arabidopsis thaliana)
- Photosystem i reaction center subunit ii-2, chloroplastic (22 kDa, Protein from Arabidopsis thaliana)
- Photosystem i subunit o (15 kDa, Protein from Arabidopsis thaliana)
- Photosystem i (Complex from Arabidopsis thaliana)
- Phylloquinone (450 Da, Ligand)
- Photosystem i chlorophyll a/b-binding protein 3-1, chloroplastic (29 kDa, Protein from Arabidopsis thaliana)
- Photosystem i reaction center subunit iii, chloroplastic (24 kDa, Protein from Arabidopsis thaliana)
- (3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
- Iron/sulfur cluster (351 Da, Ligand)
- Photosystem i iron-sulfur center (9 kDa, Protein from Arabidopsis thaliana)
- Photosystem i reaction center subunit ix (5 kDa, Protein from Arabidopsis thaliana)
- Photosystem i reaction center subunit v, chloroplastic (17 kDa, Protein from Arabidopsis thaliana)
- (3s,5r,6s,3's,5'r,6's)-5,6,5',6'-diepoxy-5,6,5',6'- tetrahydro-beta,beta-carotene-3,3'-diol (600 Da, Ligand)
- Chlorophyll b (907 Da, Ligand)
- Chlorophyll a (893 Da, Ligand)
- Photosystem i p700 chlorophyll a apoprotein a2 (82 kDa, Protein from Arabidopsis thaliana)
- Chlorophyll a-b binding protein 2.1, chloroplastic (28 kDa, Protein from Arabidopsis thaliana)
- Photosystem i p700 chlorophyll a apoprotein a1 (83 kDa, Protein from Arabidopsis thaliana)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Beta-carotene (536 Da, Ligand)
- (1r,3r)-6-{(3e,5e,7e,9e,11e,13e,15e,17e)-18-[(1s,4r,6r)-4-hydroxy-2,2,6-trimethyl-7-oxabicyclo[4.1.0]hept-1-yl]-3,7,12,16-tetramethyloctadeca-1,3,5,7,9,11,13,15,17-nonaenylidene}-1,5,5-trimethylcyclohexane-1,3-diol (600 Da, Ligand)
- Photosystem i reaction center subunit vi-2, chloroplastic (15 kDa, Protein from Arabidopsis thaliana)
Coordinates of Cryo-EM structure of the Arabidopsis thaliana PSI in state 1 (PSI-ST1)
Resolution: 3.06 Å
EM Method: Single-particle
Fitted PDBs: 8j7a
Q-score: 0.549
Wu J, Chen S, Wang C, Lin W, Huang C, Fan C, Han D, Lu D, Xu X, Sui S, Zhang L
Mol Plant (2023) 16 pp. 1937-1950 [ Pubmed: 37936349 DOI: doi:10.1016/j.molp.2023.11.002 ]
- Cryo-em structure of the arabidopsis thaliana photosystem i(psi-lhcii-st2) (Complex from Arabidopsis thaliana)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Chlorophyll a-b binding protein 6, chloroplastic (26 kDa, Protein from Arabidopsis thaliana)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Chlorophyll a isomer (893 Da, Ligand)
- Photosystem i chlorophyll a/b-binding protein 2, chloroplastic (27 kDa, Protein from Arabidopsis thaliana)
- Photosystem i reaction center subunit iv a, chloroplastic (14 kDa, Protein from Arabidopsis thaliana)
- Photosystem i reaction center subunit xi, chloroplastic (23 kDa, Protein from Arabidopsis thaliana)
- Chlorophyll a-b binding protein 4, chloroplastic (27 kDa, Protein from Arabidopsis thaliana)
- Photosystem i reaction center subunit psak, chloroplastic (13 kDa, Protein from Arabidopsis thaliana)
- Photosystem i reaction center subunit viii (4 kDa, Protein from Arabidopsis thaliana)
- Photosystem i reaction center subunit ii-2, chloroplastic (22 kDa, Protein from Arabidopsis thaliana)
- Phylloquinone (450 Da, Ligand)
- Photosystem i chlorophyll a/b-binding protein 3-1, chloroplastic (29 kDa, Protein from Arabidopsis thaliana)
- Photosystem i reaction center subunit iii, chloroplastic (24 kDa, Protein from Arabidopsis thaliana)
- (3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
- Iron/sulfur cluster (351 Da, Ligand)
- Photosystem i iron-sulfur center (9 kDa, Protein from Arabidopsis thaliana)
- Photosystem i reaction center subunit ix (5 kDa, Protein from Arabidopsis thaliana)
- Photosystem i reaction center subunit v, chloroplastic (17 kDa, Protein from Arabidopsis thaliana)
- (3s,5r,6s,3's,5'r,6's)-5,6,5',6'-diepoxy-5,6,5',6'- tetrahydro-beta,beta-carotene-3,3'-diol (600 Da, Ligand)
- Chlorophyll b (907 Da, Ligand)
- Chlorophyll a (893 Da, Ligand)
- Photosystem i p700 chlorophyll a apoprotein a2 (82 kDa, Protein from Arabidopsis thaliana)
- Photosystem i p700 chlorophyll a apoprotein a1 (83 kDa, Protein from Arabidopsis thaliana)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Beta-carotene (536 Da, Ligand)
- Photosystem i reaction center subunit vi-2, chloroplastic (15 kDa, Protein from Arabidopsis thaliana)
Coordinates of Cryo-EM structure of the Arabidopsis thaliana PSI in state 2 (PSI-ST2)
Resolution: 3.22 Å
EM Method: Single-particle
Fitted PDBs: 8j7b
Q-score: 0.576
Wu J, Chen S, Wang C, Lin W, Huang C, Fan C, Han D, Lu D, Xu X, Sui S, Zhang L
Mol Plant (2023) 16 pp. 1937-1950 [ Pubmed: 37936349 DOI: doi:10.1016/j.molp.2023.11.002 ]
- Cryo-em structure of the arabidopsis thaliana photosystem i(psi-lhcii-st2) (Complex from Arabidopsis thaliana)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Chlorophyll a-b binding protein 6, chloroplastic (26 kDa, Protein from Arabidopsis thaliana)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Chlorophyll a isomer (893 Da, Ligand)
- Photosystem i chlorophyll a/b-binding protein 2, chloroplastic (27 kDa, Protein from Arabidopsis thaliana)
- Photosystem i reaction center subunit iv a, chloroplastic (14 kDa, Protein from Arabidopsis thaliana)
- Photosystem i reaction center subunit xi, chloroplastic (23 kDa, Protein from Arabidopsis thaliana)
- Chlorophyll a-b binding protein 4, chloroplastic (27 kDa, Protein from Arabidopsis thaliana)
- Photosystem i reaction center subunit psak, chloroplastic (13 kDa, Protein from Arabidopsis thaliana)
- Photosystem i reaction center subunit viii (4 kDa, Protein from Arabidopsis thaliana)
- Photosystem i reaction center subunit ii-2, chloroplastic (22 kDa, Protein from Arabidopsis thaliana)
- Phylloquinone (450 Da, Ligand)
- Photosystem i chlorophyll a/b-binding protein 3-1, chloroplastic (29 kDa, Protein from Arabidopsis thaliana)
- Photosystem i reaction center subunit iii, chloroplastic (24 kDa, Protein from Arabidopsis thaliana)
- (3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
- Iron/sulfur cluster (351 Da, Ligand)
- Photosystem i iron-sulfur center (9 kDa, Protein from Arabidopsis thaliana)
- Photosystem i reaction center subunit ix (5 kDa, Protein from Arabidopsis thaliana)
- Photosystem i reaction center subunit v, chloroplastic (17 kDa, Protein from Arabidopsis thaliana)
- (3s,5r,6s,3's,5'r,6's)-5,6,5',6'-diepoxy-5,6,5',6'- tetrahydro-beta,beta-carotene-3,3'-diol (600 Da, Ligand)
- Chlorophyll b (907 Da, Ligand)
- Chlorophyll a (893 Da, Ligand)
- Photosystem i p700 chlorophyll a apoprotein a2 (82 kDa, Protein from Arabidopsis thaliana)
- Photosystem i p700 chlorophyll a apoprotein a1 (83 kDa, Protein from Arabidopsis thaliana)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Beta-carotene (536 Da, Ligand)
- Photosystem i reaction center subunit vi-2, chloroplastic (15 kDa, Protein from Arabidopsis thaliana)
Chlamydomonas reinhardtii TSP9 mutant small Photosystem I complex
Resolution: 2.52 Å
EM Method: Single-particle
Fitted PDBs: 7r3k
Q-score: 0.633
Schwartz T, Fadeeva M, Klaiman D, Nelson N
Biomolecules (2023) 13 [ DOI: doi:10.3390/biom13030537 Pubmed: 36979472 ]
- Photosystem i reaction center subunit viii (10 kDa, Protein from Chlamydomonas reinhardtii)
- Photosystem i reaction center subunit iv, chloroplastic (10 kDa, Protein from Chlamydomonas reinhardtii)
- C. reinhardtii photosystem i supercomplex (780 kDa, Complex from Chlamydomonas reinhardtii)
- Diacyl glycerol (625 Da, Ligand)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Photosystem i iron-sulfur center (8 kDa, Protein from Chlamydomonas reinhardtii)
- Chlorophyll a isomer (893 Da, Ligand)
- Photosystem i reaction center subunit iii, chloroplastic (24 kDa, Protein from Chlamydomonas reinhardtii)
- Ergosterol (396 Da, Ligand)
- Photosystem i p700 chlorophyll a apoprotein a2 (82 kDa, Protein from Chlamydomonas reinhardtii)
- Chlorophyll a-b binding protein, chloroplastic (25 kDa, Protein from Chlamydomonas reinhardtii)
- Lauric acid (200 Da, Ligand)
- Water (18 Da, Ligand)
- Photosystem i p700 chlorophyll a apoprotein a1 (83 kDa, Protein from Chlamydomonas reinhardtii)
- Chlorophyll a-b binding protein, chloroplastic (27 kDa, Protein from Chlamydomonas reinhardtii)
- Chlorophyll a-b binding protein, chloroplastic (lhca4) (28 kDa, Protein from Chlamydomonas reinhardtii)
- Calcium ion (40 Da, Ligand)
- Photosystem i reaction center subunit ix (4 kDa, Protein from Chlamydomonas reinhardtii)
- 1,2-diacyl-glycerol-3-sn-phosphate (704 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (32 kDa, Protein from Chlamydomonas reinhardtii)
- Phylloquinone (450 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (28 kDa, Protein from Chlamydomonas reinhardtii)
- (3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
- Iron/sulfur cluster (351 Da, Ligand)
- Photosystem i reaction center subunit psak, chloroplastic (11 kDa, Protein from Chlamydomonas reinhardtii)
- Chlorophyll a-b binding protein, chloroplastic (26 kDa, Protein from Chlamydomonas reinhardtii)
- Photosystem i reaction center subunit v, chloroplastic (13 kDa, Protein from Chlamydomonas reinhardtii)
- (3r)-beta,beta-caroten-3-ol (552 Da, Ligand)
- Chlorophyll b (907 Da, Ligand)
- Chlorophyll a (893 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (23 kDa, Protein from Chlamydomonas reinhardtii)
- Sphingosine (299 Da, Ligand)
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Photosystem i reaction center subunit ii, chloroplastic (21 kDa, Protein from Chlamydomonas reinhardtii)
- Beta-carotene (536 Da, Ligand)
- (1~{s})-3,5,5-trimethyl-4-[(1~{e},3~{e},5~{e},7~{e},9~{e},11~{e},13~{e},15~{e},17~{e})-3,7,12,16-tetramethyl-18-[(4~{s})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenyl]cyclohex-3-en-1-ol (568 Da, Ligand)
- Dodecyl-beta-d-maltoside (510 Da, Ligand)
- Palmitic acid (256 Da, Ligand)
Native Photosystem I of Chlamydomonas reinhardtii
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 7wyi
Q-score: 0.39
Gerle C, Misumi Y, Kawamoto A, Tanaka H, Kubota-Kawai H, Tokutsu R, Kim E, Chorev D, Abe K, Robinson CV, Mitsuoka K, Minagawa J, Kurisu G
Biochim Biophys Acta Bioenerg (2023) 1864 pp. 148986-148986 [ Pubmed: 37270022 DOI: doi:10.1016/j.bbabio.2023.148986 ]
- Native photosystem i with bound light harvesting complex i from chlamydomonas reinhardtii thylakoid membranes. (765 kDa, Complex from Chlamydomonas reinhardtii)
- Photosystem i reaction center subunit iv, chloroplastic (10 kDa, Protein from Chlamydomonas reinhardtii)
- Photosystem i iron-sulfur center (8 kDa, Protein from Chlamydomonas reinhardtii)
- Chlorophyll a isomer (893 Da, Ligand)
- Photosystem i reaction center subunit iii, chloroplastic (24 kDa, Protein from Chlamydomonas reinhardtii)
- Photosystem i p700 chlorophyll a apoprotein a2 (82 kDa, Protein from Chlamydomonas reinhardtii)
- Chlorophyll a-b binding protein, chloroplastic (25 kDa, Protein from Chlamydomonas reinhardtii)
- Photosystem i p700 chlorophyll a apoprotein a1 (83 kDa, Protein from Chlamydomonas reinhardtii)
- Chlorophyll a-b binding protein, chloroplastic (27 kDa, Protein from Chlamydomonas reinhardtii)
- Photosystem i reaction center subunit ix (4 kDa, Protein from Chlamydomonas reinhardtii)
- Chlorophyll a-b binding protein, chloroplastic (32 kDa, Protein from Chlamydomonas reinhardtii)
- Phylloquinone (450 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (28 kDa, Protein from Chlamydomonas reinhardtii)
- Iron/sulfur cluster (351 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (26 kDa, Protein from Chlamydomonas reinhardtii)
- Chlorophyll a-b binding protein, chloroplastic (23 kDa, Protein from Chlamydomonas reinhardtii)
- Chlorophyll b (907 Da, Ligand)
- Chlorophyll a (893 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (23 kDa, Protein from Chlamydomonas reinhardtii)
- Photosystem i reaction center subunit ii, chloroplastic (21 kDa, Protein from Chlamydomonas reinhardtii)
- Chlorophyll a-b binding protein, chloroplastic (28 kDa, Protein from Chlamydomonas reinhardtii)
PSI-LHCI from Chlamydomonas reinhardtii with bound ferredoxin
Resolution: 4.9 Å
EM Method: Single-particle
Fitted PDBs: 7wzn
Q-score: 0.295
Gerle C, Misumi Y, Kawamoto A, Tanaka H, Kubota-Kawai H, Tokutsu R, Kim E, Chorev D, Abe K, Robinson CV, Mitsuoka K, Minagawa J, Kurisu G
Biochim Biophys Acta Bioenerg (2023) 1864 pp. 148986-148986 [ Pubmed: 37270022 DOI: doi:10.1016/j.bbabio.2023.148986 ]
- Photosystem i reaction center subunit iv, chloroplastic (10 kDa, Protein from Chlamydomonas reinhardtii)
- Photosystem i iron-sulfur center (8 kDa, Protein from Chlamydomonas reinhardtii)
- Ferredoxin (Complex from Chlamydomonas reinhardtii)
- Photosystem i reaction center subunit iii, chloroplastic (24 kDa, Protein from Chlamydomonas reinhardtii)
- Chlorophyll a isomer (893 Da, Ligand)
- Photosystem i p700 chlorophyll a apoprotein a2 (82 kDa, Protein from Chlamydomonas reinhardtii)
- Chlorophyll a-b binding protein, chloroplastic (25 kDa, Protein from Chlamydomonas reinhardtii)
- Ferredoxin, chloroplastic (13 kDa, Protein from Chlamydomonas reinhardtii)
- Photosystem i p700 chlorophyll a apoprotein a1 (83 kDa, Protein from Chlamydomonas reinhardtii)
- Chlorophyll a-b binding protein, chloroplastic (27 kDa, Protein from Chlamydomonas reinhardtii)
- Photosystem i reaction center subunit ix (4 kDa, Protein from Chlamydomonas reinhardtii)
- Photosystem i from chlamydomonas reinhardtii with bound ferredoxin. (785 kDa, Complex)
- Chlorophyll a-b binding protein, chloroplastic (32 kDa, Protein from Chlamydomonas reinhardtii)
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- Phylloquinone (450 Da, Ligand)
- Membrane supercomplex (Complex from Chlamydomonas reinhardtii)
- Chlorophyll a-b binding protein, chloroplastic (28 kDa, Protein from Chlamydomonas reinhardtii)
- Iron/sulfur cluster (351 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (26 kDa, Protein from Chlamydomonas reinhardtii)
- Chlorophyll a-b binding protein, chloroplastic (23 kDa, Protein from Chlamydomonas reinhardtii)
- Chlorophyll b (907 Da, Ligand)
- Chlorophyll a (893 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (23 kDa, Protein from Chlamydomonas reinhardtii)
- Photosystem i reaction center subunit ii, chloroplastic (21 kDa, Protein from Chlamydomonas reinhardtii)
- Chlorophyll a-b binding protein, chloroplastic (28 kDa, Protein from Chlamydomonas reinhardtii)
Dimeric PSI of Chlamydomonas reinhardtii at 2.74 A resolution (symmetry expanded)
Resolution: 2.74 Å
EM Method: Single-particle
Fitted PDBs: 7zq9
Q-score: 0.609
Naschberger A, Mosebach L, Tobiasson V, Kuhlgert S, Scholz M, Perez-Boerema A, Ho TTH, Vidal-Meireles A, Takahashi Y, Hippler M, Amunts A
Nat Plants (2022) 8 pp. 1191-1201 [ Pubmed: 36229605 DOI: doi:10.1038/s41477-022-01253-4 ]
- Photosystem i reaction center subunit viii (10 kDa, Protein from Chlamydomonas reinhardtii)
- Photosystem i reaction center subunit iv, chloroplastic (10 kDa, Protein from Chlamydomonas reinhardtii)
- Photosystem i dimer of chlamydomonas reinhardtii (700 kDa, Cellular component from Chlamydomonas reinhardtii)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Photosystem i iron-sulfur center (8 kDa, Protein from Chlamydomonas reinhardtii)
- Chlorophyll a isomer (893 Da, Ligand)
- Photosystem i reaction center subunit iii, chloroplastic (24 kDa, Protein from Chlamydomonas reinhardtii)
- Photosystem i p700 chlorophyll a apoprotein a2 (82 kDa, Protein from Chlamydomonas reinhardtii)
- Chlorophyll a-b binding protein, chloroplastic (25 kDa, Protein from Chlamydomonas reinhardtii)
- Water (18 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (22 kDa, Protein from Chlamydomonas reinhardtii)
- Photosystem i p700 chlorophyll a apoprotein a1 (83 kDa, Protein from Chlamydomonas reinhardtii)
- Chlorophyll a-b binding protein, chloroplastic (27 kDa, Protein from Chlamydomonas reinhardtii)
- Chlorophyll a-b binding protein, chloroplastic (lhca4) (28 kDa, Protein from Chlamydomonas reinhardtii)
- Chlorophyll a-b binding protein, chloroplastic (32 kDa, Protein from Chlamydomonas reinhardtii)
- Dodecyl-alpha-d-maltoside (510 Da, Ligand)
- Phylloquinone (450 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (28 kDa, Protein from Chlamydomonas reinhardtii)
- (3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
- Iron/sulfur cluster (351 Da, Ligand)
- Photosystem i reaction center subunit psak, chloroplastic (11 kDa, Protein from Chlamydomonas reinhardtii)
- Photosystem i reaction center subunit ix (4 kDa, Protein from Chlamydomonas reinhardtii)
- Chlorophyll a-b binding protein, chloroplastic (26 kDa, Protein from Chlamydomonas reinhardtii)
- Photosystem i reaction center subunit v, chloroplastic (13 kDa, Protein from Chlamydomonas reinhardtii)
- (3s,5r,6s,3's,5'r,6's)-5,6,5',6'-diepoxy-5,6,5',6'- tetrahydro-beta,beta-carotene-3,3'-diol (600 Da, Ligand)
- Chlorophyll b (907 Da, Ligand)
- Chlorophyll a (893 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (23 kDa, Protein from Chlamydomonas reinhardtii)
- Photosystem i reaction center subunit ii, chloroplastic (21 kDa, Protein from Chlamydomonas reinhardtii)
- Psi subunit v (20 kDa, Protein from Chlamydomonas reinhardtii)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Beta-carotene (536 Da, Ligand)
- Photosystem i p700 chlorophyll a apoprotein a2 (20 kDa, Protein from Chlamydomonas reinhardtii)
- (1r,3r)-6-{(3e,5e,7e,9e,11e,13e,15e,17e)-18-[(1s,4r,6r)-4-hydroxy-2,2,6-trimethyl-7-oxabicyclo[4.1.0]hept-1-yl]-3,7,12,16-tetramethyloctadeca-1,3,5,7,9,11,13,15,17-nonaenylidene}-1,5,5-trimethylcyclohexane-1,3-diol (600 Da, Ligand)
Monomeric PSI of Chlamydomonas reinhardtii at 2.31 A resolution
Resolution: 2.31 Å
EM Method: Single-particle
Fitted PDBs: 7zqc
Q-score: 0.675
Naschberger A, Mosebach L, Tobiasson V, Kuhlgert S, Scholz M, Perez-Boerema A, Ho TTH, Vidal-Meireles A, Takahashi Y, Hippler M, Amunts A
Nat Plants (2022) 8 pp. 1191-1201 [ Pubmed: 36229605 DOI: doi:10.1038/s41477-022-01253-4 ]
- Photosystem i reaction center subunit viii (10 kDa, Protein from Chlamydomonas reinhardtii)
- Photosystem i reaction center subunit iv, chloroplastic (10 kDa, Protein from Chlamydomonas reinhardtii)
- Photosystem i dimer of chlamydomonas reinhardtii (700 kDa, Cellular component from Chlamydomonas reinhardtii)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Photosystem i iron-sulfur center (8 kDa, Protein from Chlamydomonas reinhardtii)
- Chlorophyll a isomer (893 Da, Ligand)
- Photosystem i reaction center subunit iii, chloroplastic (24 kDa, Protein from Chlamydomonas reinhardtii)
- Photosystem i p700 chlorophyll a apoprotein a2 (82 kDa, Protein from Chlamydomonas reinhardtii)
- Chlorophyll a-b binding protein, chloroplastic (25 kDa, Protein from Chlamydomonas reinhardtii)
- Water (18 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (22 kDa, Protein from Chlamydomonas reinhardtii)
- Photosystem i p700 chlorophyll a apoprotein a1 (83 kDa, Protein from Chlamydomonas reinhardtii)
- Chlorophyll a-b binding protein, chloroplastic (27 kDa, Protein from Chlamydomonas reinhardtii)
- Chlorophyll a-b binding protein, chloroplastic (lhca4) (28 kDa, Protein from Chlamydomonas reinhardtii)
- Chlorophyll a-b binding protein, chloroplastic (32 kDa, Protein from Chlamydomonas reinhardtii)
- Dodecyl-alpha-d-maltoside (510 Da, Ligand)
- Phylloquinone (450 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (28 kDa, Protein from Chlamydomonas reinhardtii)
- (3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
- Iron/sulfur cluster (351 Da, Ligand)
- Photosystem i reaction center subunit psak, chloroplastic (11 kDa, Protein from Chlamydomonas reinhardtii)
- Photosystem i reaction center subunit ix (4 kDa, Protein from Chlamydomonas reinhardtii)
- Chlorophyll a-b binding protein, chloroplastic (26 kDa, Protein from Chlamydomonas reinhardtii)
- Photosystem i reaction center subunit v, chloroplastic (13 kDa, Protein from Chlamydomonas reinhardtii)
- (3s,5r,6s,3's,5'r,6's)-5,6,5',6'-diepoxy-5,6,5',6'- tetrahydro-beta,beta-carotene-3,3'-diol (600 Da, Ligand)
- Chlorophyll b (907 Da, Ligand)
- Chlorophyll a (893 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (23 kDa, Protein from Chlamydomonas reinhardtii)
- Photosystem i reaction center subunit ii, chloroplastic (21 kDa, Protein from Chlamydomonas reinhardtii)
- Psi subunit v (20 kDa, Protein from Chlamydomonas reinhardtii)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Beta-carotene (536 Da, Ligand)
- (1r,3r)-6-{(3e,5e,7e,9e,11e,13e,15e,17e)-18-[(1s,4r,6r)-4-hydroxy-2,2,6-trimethyl-7-oxabicyclo[4.1.0]hept-1-yl]-3,7,12,16-tetramethyloctadeca-1,3,5,7,9,11,13,15,17-nonaenylidene}-1,5,5-trimethylcyclohexane-1,3-diol (600 Da, Ligand)
Dimeric PSI of Chlamydomonas reinhardtii at 2.97 A resolution
Resolution: 2.97 Å
EM Method: Single-particle
Fitted PDBs: 7zqd
Q-score: 0.559
Naschberger A, Mosebach L, Tobiasson V, Kuhlgert S, Scholz M, Perez-Boerema A, Ho TTH, Vidal-Meireles A, Takahashi Y, Hippler M, Amunts A
Nat Plants (2022) 8 pp. 1191-1201 [ Pubmed: 36229605 DOI: doi:10.1038/s41477-022-01253-4 ]
- Photosystem i reaction center subunit viii (10 kDa, Protein from Chlamydomonas reinhardtii)
- Photosystem i reaction center subunit iv, chloroplastic (10 kDa, Protein from Chlamydomonas reinhardtii)
- Photosystem i dimer of chlamydomonas reinhardtii (700 kDa, Cellular component from Chlamydomonas reinhardtii)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Photosystem i iron-sulfur center (8 kDa, Protein from Chlamydomonas reinhardtii)
- Chlorophyll a isomer (893 Da, Ligand)
- Photosystem i reaction center subunit iii, chloroplastic (24 kDa, Protein from Chlamydomonas reinhardtii)
- Photosystem i p700 chlorophyll a apoprotein a2 (82 kDa, Protein from Chlamydomonas reinhardtii)
- Chlorophyll a-b binding protein, chloroplastic (25 kDa, Protein from Chlamydomonas reinhardtii)
- Water (18 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (22 kDa, Protein from Chlamydomonas reinhardtii)
- Photosystem i p700 chlorophyll a apoprotein a1 (83 kDa, Protein from Chlamydomonas reinhardtii)
- Chlorophyll a-b binding protein, chloroplastic (27 kDa, Protein from Chlamydomonas reinhardtii)
- Chlorophyll a-b binding protein, chloroplastic (lhca4) (28 kDa, Protein from Chlamydomonas reinhardtii)
- Chlorophyll a-b binding protein, chloroplastic (32 kDa, Protein from Chlamydomonas reinhardtii)
- Dodecyl-alpha-d-maltoside (510 Da, Ligand)
- Phylloquinone (450 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (28 kDa, Protein from Chlamydomonas reinhardtii)
- (3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
- Iron/sulfur cluster (351 Da, Ligand)
- Photosystem i reaction center subunit psak, chloroplastic (11 kDa, Protein from Chlamydomonas reinhardtii)
- Photosystem i reaction center subunit ix (4 kDa, Protein from Chlamydomonas reinhardtii)
- Chlorophyll a-b binding protein, chloroplastic (26 kDa, Protein from Chlamydomonas reinhardtii)
- Photosystem i reaction center subunit v, chloroplastic (13 kDa, Protein from Chlamydomonas reinhardtii)
- (3s,5r,6s,3's,5'r,6's)-5,6,5',6'-diepoxy-5,6,5',6'- tetrahydro-beta,beta-carotene-3,3'-diol (600 Da, Ligand)
- Chlorophyll b (907 Da, Ligand)
- Chlorophyll a (893 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (23 kDa, Protein from Chlamydomonas reinhardtii)
- Photosystem i reaction center subunit ii, chloroplastic (21 kDa, Protein from Chlamydomonas reinhardtii)
- Psi subunit v (20 kDa, Protein from Chlamydomonas reinhardtii)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Beta-carotene (536 Da, Ligand)
- (1r,3r)-6-{(3e,5e,7e,9e,11e,13e,15e,17e)-18-[(1s,4r,6r)-4-hydroxy-2,2,6-trimethyl-7-oxabicyclo[4.1.0]hept-1-yl]-3,7,12,16-tetramethyloctadeca-1,3,5,7,9,11,13,15,17-nonaenylidene}-1,5,5-trimethylcyclohexane-1,3-diol (600 Da, Ligand)
Left PSI in the cyclic electron transport supercomplex NDH-PSI from Arabidopsis
Resolution: 3.25 Å
EM Method: Single-particle
Fitted PDBs: 7wfd
Q-score: 0.526
Su X, Cao D, Pan X, Shi L, Liu Z, Dall'Osto L, Bassi R, Zhang X, Li M
Mol Plant (2022) 15 pp. 454-467 [ DOI: doi:10.1016/j.molp.2022.01.020 Pubmed: 35123031 ]
- Photosystem i reaction center subunit psak, chloroplastic (13 kDa, Protein from thale cress)
- Photosystem i reaction center subunit v, chloroplastic (17 kDa, Protein from thale cress)
- Photosystem i reaction center subunit xi, chloroplastic (23 kDa, Protein from thale cress)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Photosystem i reaction center subunit ii-2, chloroplastic (22 kDa, Protein from thale cress)
- Photosystem i reaction center subunit viii (4 kDa, Protein from thale cress)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Cylic electron transfer supercomplex from arabidopsis (Complex from Arabidopsis thaliana)
- Photosystem i reaction center subunit iii, chloroplastic (24 kDa, Protein from thale cress)
- Chlorophyll a-b binding protein 4, chloroplastic (27 kDa, Protein from thale cress)
- Photosystem i reaction center subunit ix (5 kDa, Protein from thale cress)
- Dodecyl-alpha-d-maltoside (510 Da, Ligand)
- Phylloquinone (450 Da, Ligand)
- Photosystem i chlorophyll a/b-binding protein 3-1, chloroplastic (29 kDa, Protein from thale cress)
- Chlorophyll a-b binding protein 6, chloroplastic (26 kDa, Protein from thale cress)
- (3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
- Iron/sulfur cluster (351 Da, Ligand)
- Photosystem i reaction center subunit iv a, chloroplastic (14 kDa, Protein from thale cress)
- (3s,5r,6s,3's,5'r,6's)-5,6,5',6'-diepoxy-5,6,5',6'- tetrahydro-beta,beta-carotene-3,3'-diol (600 Da, Ligand)
- Chlorophyll b (907 Da, Ligand)
- Chlorophyll a (893 Da, Ligand)
- Photosystem i iron-sulfur center (9 kDa, Protein from thale cress)
- Photosystem i reaction center subunit vi-2, chloroplastic (15 kDa, Protein from thale cress)
- Photosystem i p700 chlorophyll a apoprotein a2 (82 kDa, Protein from thale cress)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Photosystem i chlorophyll a/b-binding protein 6, chloroplastic (29 kDa, Protein from thale cress)
- Beta-carotene (536 Da, Ligand)
- Photosystem i p700 chlorophyll a apoprotein a1 (83 kDa, Protein from thale cress)