EMDB < Search results

EMBL

was set up in 1974 as Europe’s flagship laboratory for the life sciences – an intergovernmental organisation with more than 80 independent research groups covering the spectrum of molecular biology:

Research:

perform basic research in molecular biology

Services:

offer vital services to scientists in the member states

Training

scientists, students and visitors at all levels

Transfer

and development of technology

Develop

new instruments and methods

Integrating

life science research in Europe

More about EMBL

Six sites

represent EMBL in Europe.

Barcelona

Tissue biology and disease modelling

Grenoble

Structural biology

Hamburg

Structural biology

Heidelberg

Main laboratory

Hinxton

EMBL-EBI: European Bioinformatics Institute

Rome

Epigenetics and neurobiology

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sample_name:"POTASSIUM ION" AND electron_source:"TUNGSTEN HAIRPIN"

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EMD-40349

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CryoEM structure of rat Kv2.1(1-598) wild type in nanodiscs

Release date: Sept. 27, 2023
Resolution: 2.95 Å
EM Method: Single-particle
Fitted PDBs: 8sd3
Q-score: 0.534

Fernandez-Marino AI, Tan XF, Bae C, Huffer K, Jiang J, Swartz KJ

Nature (2023) 622 pp. 410-417 [ DOI: doi:10.1038/s41586-023-06582-8 Pubmed: 37758949 ]

Sample:

Potassium voltage-gated channel subfamily b member 1 (68 kDa, Protein from Rattus norvegicus)
(2s)-3-(hexadecanoyloxy)-2-[(9z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate (760 Da, Ligand)
Voltage-dependent potassium channel kv2.1 (Complex from Rattus norvegicus)
Potassium ion (39 Da, Ligand)

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EMD-40350

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CryoEM structure of rat Kv2.1(1-598) L403A mutant in nanodiscs

Release date: Sept. 27, 2023
Resolution: 3.32 Å
EM Method: Single-particle
Fitted PDBs: 8sda
Q-score: 0.478

Fernandez-Marino AI, Tan XF, Bae C, Huffer K, Jiang J, Swartz KJ

Nature (2023) 622 pp. 410-417 [ DOI: doi:10.1038/s41586-023-06582-8 Pubmed: 37758949 ]

Sample:

Potassium ion (39 Da, Ligand)
(2s)-3-(hexadecanoyloxy)-2-[(9z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate (760 Da, Ligand)
Voltage-dependent potassium channel kv2.1 l403a mutant (Complex from Rattus norvegicus)
Potassium voltage-gated channel subfamily b member 1 (68 kDa, Protein from Rattus norvegicus)

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EMD-33329

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High resolution cry-EM structure of the human 80S ribosome from SNORD127+/+ Kasumi-1 cells

Release date: April 5, 2023
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 7xnx
Q-score: 0.58

Zhou F, Aroua N, Liu Y, Rohde C, Cheng J, Wirth AK, Fijalkowska D, Gollner S, Lotze M, Yun H, Yu X, Pabst C, Sauer T, Oellerich T, Serve H, Rollig C, Bornhauser M, Thiede C, Baldus C, Frye M, Raffel S, Krijgsveld J, Jeremias I, Beckmann R, Trumpp A, Muller-Tidow C

Cancer Discov (2023) 13 pp. 332-347 [ DOI: doi:10.1158/2159-8290.CD-22-0210 Pubmed: 36259929 ]

Sample:

5s rrna (38 kDa, RNA from human)
40s ribosomal protein s14 (16 kDa, Protein from human)
40s ribosomal protein s24 (15 kDa, Protein from human)
40s ribosomal protein s21 (9 kDa, Protein from human)
40s ribosomal protein s26 (13 kDa, Protein from human)
60s ribosomal protein l24 (17 kDa, Protein from human)
40s ribosomal protein s6 (28 kDa, Protein from human)
40s ribosomal protein s2 (31 kDa, Protein from human)
40s ribosomal protein s11 (18 kDa, Protein from human)
40s ribosomal protein s19 (16 kDa, Protein from human)
40s ribosomal protein s23 (15 kDa, Protein from human)
60s ribosomal protein l18 (21 kDa, Protein from human)
40s ribosomal protein s18 (17 kDa, Protein from human)
60s ribosomal protein l36a (12 kDa, Protein from human)
60s ribosomal protein l22 (14 kDa, Protein from human)
60s ribosomal protein l11 (20 kDa, Protein from human)
Water (18 Da, Ligand)
60s ribosomal protein l4 (47 kDa, Protein from human)
60s ribosomal protein l5 (34 kDa, Protein from human)
60s ribosomal protein l13a (23 kDa, Protein from human)
60s ribosomal protein l31 (14 kDa, Protein from human)
40s ribosomal protein s15a (14 kDa, Protein from human)
60s ribosomal protein l14 (23 kDa, Protein from human)
60s ribosomal protein l30 (12 kDa, Protein from human)
Ubiquitin-40s ribosomal protein s27a (15 kDa, Protein from human)
40s ribosomal protein s3a (30 kDa, Protein from human)
60s ribosomal protein l3 (46 kDa, Protein from human)
40s ribosomal protein s7 (22 kDa, Protein from human)
40s ribosomal protein sa (32 kDa, Protein from human)
Ubiquitin-60s ribosomal protein l40 (14 kDa, Protein from human)
60s ribosomal protein l23a (17 kDa, Protein from human)
5.8s rrna (50 kDa, RNA from human)
60s ribosomal protein l35a (12 kDa, Protein from human)
60s ribosomal protein l37a (10 kDa, Protein from human)
Potassium ion (39 Da, Ligand)
60s ribosomal protein l32 (15 kDa, Protein from human)
40s ribosomal protein s25 (13 kDa, Protein from human)
40s ribosomal protein s15 (17 kDa, Protein from human)
Ribosomal protein l10 isoform a (24 kDa, Protein from human)
60s ribosomal protein l28 (15 kDa, Protein from human)
Ribosome (Complex from Homo sapiens)
40s ribosomal protein s16 (16 kDa, Protein from human)
40s ribosomal protein s10 (18 kDa, Protein from human)
40s ribosomal protein s17 (15 kDa, Protein from human)
60s ribosomal protein l38 (8 kDa, Protein from human)
40s ribosomal protein s30 (6 kDa, Protein from human)
40s ribosomal protein s13 (17 kDa, Protein from human)
40s ribosomal protein s29 (6 kDa, Protein from human)
60s ribosomal protein l18a (20 kDa, Protein from human)
60s ribosomal protein l13 (24 kDa, Protein from human)
60s ribosomal protein l34 (13 kDa, Protein from human)
60s ribosomal protein l35 (14 kDa, Protein from human)
60s ribosomal protein l23 (14 kDa, Protein from human)
60s ribosomal protein l7 (29 kDa, Protein from human)
60s ribosomal protein l7a (30 kDa, Protein from human)
60s ribosomal protein l9 (21 kDa, Protein from human)
60s ribosomal protein l21 (18 kDa, Protein from human)
60s ribosomal protein l41 (3 kDa, Protein from human)
Magnesium ion (24 Da, Ligand)
60s ribosomal protein l6 (32 kDa, Protein from human)
40s ribosomal protein s12 (14 kDa, Protein from human)
40s ribosomal protein s27 (9 kDa, Protein from human)
40s ribosomal protein s20 (13 kDa, Protein from human)
40s ribosomal protein s8 (24 kDa, Protein from human)
60s ribosomal protein l39 (6 kDa, Protein from human)
60s ribosomal protein l19 (23 kDa, Protein from human)
60s ribosomal protein l26 (17 kDa, Protein from human)
40s ribosomal protein s5 (22 kDa, Protein from human)
60s ribosomal protein l36 (12 kDa, Protein from human)
60s ribosomal protein l15 (24 kDa, Protein from human)
40s ribosomal protein s9 (22 kDa, Protein from human)
28s rrna (1 MDa, RNA from human)
40s ribosomal protein s4, x isoform (29 kDa, Protein from human)
60s ribosomal protein l8 (28 kDa, Protein from human)
60s ribosomal protein l37 (11 kDa, Protein from human)
Zinc ion (65 Da, Ligand)
Receptor of activated protein c kinase 1 (35 kDa, Protein from human)
40s ribosomal protein s28 (7 kDa, Protein from human)
60s ribosomal protein l27 (32 kDa, Protein from human)
18s rrna (603 kDa, RNA from human)
60s ribosomal protein l17 (21 kDa, Protein from human)
60s ribosomal protein l29 (17 kDa, Protein from human)
40s ribosomal protein s3 (26 kDa, Protein from human)
Trna (24 kDa, RNA from human)

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EMD-33330

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High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells

Release date: April 5, 2023
Resolution: 2.5 Å
EM Method: Single-particle
Fitted PDBs: 7xny
Q-score: 0.56

Zhou F, Aroua N, Liu Y, Rohde C, Cheng J, Wirth AK, Fijalkowska D, Gollner S, Lotze M, Yun H, Yu X, Pabst C, Sauer T, Oellerich T, Serve H, Rollig C, Bornhauser M, Thiede C, Baldus C, Frye M, Raffel S, Krijgsveld J, Jeremias I, Beckmann R, Trumpp A, Muller-Tidow C

Cancer Discov (2023) 13 pp. 332-347 [ DOI: doi:10.1158/2159-8290.CD-22-0210 Pubmed: 36259929 ]

Sample:

40s ribosomal protein s24 (15 kDa, Protein from human)
40s ribosomal protein s14 (16 kDa, Protein from human)
40s ribosomal protein s21 (9 kDa, Protein from human)
40s ribosomal protein s26 (13 kDa, Protein from human)
60s ribosomal protein l24 (17 kDa, Protein from human)
40s ribosomal protein s6 (28 kDa, Protein from human)
40s ribosomal protein s2 (31 kDa, Protein from human)
40s ribosomal protein s11 (18 kDa, Protein from human)
40s ribosomal protein s19 (16 kDa, Protein from human)
40s ribosomal protein s23 (15 kDa, Protein from human)
60s ribosomal protein l18 (21 kDa, Protein from human)
40s ribosomal protein s18 (17 kDa, Protein from human)
60s ribosomal protein l36a (12 kDa, Protein from human)
60s ribosomal protein l22 (14 kDa, Protein from human)
60s ribosomal protein l11 (20 kDa, Protein from human)
Water (18 Da, Ligand)
60s ribosomal protein l4 (47 kDa, Protein from human)
60s ribosomal protein l5 (34 kDa, Protein from human)
60s ribosomal protein l13a (23 kDa, Protein from human)
60s ribosomal protein l31 (14 kDa, Protein from human)
60s ribosomal protein l27 (15 kDa, Protein from human)
40s ribosomal protein s15a (14 kDa, Protein from human)
5.8s rrna (50 kDa, RNA from human)
60s ribosomal protein l14 (23 kDa, Protein from human)
60s ribosomal protein l30 (12 kDa, Protein from human)
60s ribosomal protein l27a (16 kDa, Protein from human)
40s ribosomal protein s3a (30 kDa, Protein from human)
60s ribosomal protein l3 (46 kDa, Protein from human)
40s ribosomal protein s7 (22 kDa, Protein from human)
40s ribosomal protein sa (32 kDa, Protein from human)
Ubiquitin-60s ribosomal protein l40 (14 kDa, Protein from human)
60s ribosomal protein l23a (17 kDa, Protein from human)
60s ribosomal protein l35a (12 kDa, Protein from human)
60s ribosomal protein l37a (10 kDa, Protein from human)
Potassium ion (39 Da, Ligand)
60s ribosomal protein l32 (15 kDa, Protein from human)
40s ribosomal protein s25 (13 kDa, Protein from human)
40s ribosomal protein s15 (17 kDa, Protein from human)
Ribosomal protein l10 isoform a (24 kDa, Protein from human)
60s ribosomal protein l28 (15 kDa, Protein from human)
Ribosome (Complex from Homo sapiens)
40s ribosomal protein s16 (16 kDa, Protein from human)
40s ribosomal protein s10 (18 kDa, Protein from human)
40s ribosomal protein s17 (15 kDa, Protein from human)
60s ribosomal protein l38 (8 kDa, Protein from human)
40s ribosomal protein s30 (6 kDa, Protein from human)
40s ribosomal protein s13 (17 kDa, Protein from human)
40s ribosomal protein s29 (6 kDa, Protein from human)
60s ribosomal protein l18a (20 kDa, Protein from human)
60s ribosomal protein l13 (24 kDa, Protein from human)
60s ribosomal protein l34 (13 kDa, Protein from human)
60s ribosomal protein l35 (14 kDa, Protein from human)
60s ribosomal protein l23 (14 kDa, Protein from human)
60s ribosomal protein l7 (29 kDa, Protein from human)
60s ribosomal protein l7a (30 kDa, Protein from human)
60s ribosomal protein l9 (21 kDa, Protein from human)
60s ribosomal protein l21 (18 kDa, Protein from human)
5s rrna (38 kDa, RNA from human)
60s ribosomal protein l41 (3 kDa, Protein from human)
Magnesium ion (24 Da, Ligand)
60s ribosomal protein l6 (32 kDa, Protein from human)
40s ribosomal protein s12 (14 kDa, Protein from human)
40s ribosomal protein s27 (9 kDa, Protein from human)
40s ribosomal protein s20 (13 kDa, Protein from human)
40s ribosomal protein s8 (24 kDa, Protein from human)
60s ribosomal protein l39 (6 kDa, Protein from human)
60s ribosomal protein l19 (23 kDa, Protein from human)
60s ribosomal protein l26 (17 kDa, Protein from human)
40s ribosomal protein s5 (22 kDa, Protein from human)
60s ribosomal protein l36 (12 kDa, Protein from human)
60s ribosomal protein l15 (24 kDa, Protein from human)
40s ribosomal protein s9 (22 kDa, Protein from human)
28s rrna (1 MDa, RNA from human)
40s ribosomal protein s4, x isoform (29 kDa, Protein from human)
60s ribosomal protein l8 (28 kDa, Protein from human)
60s ribosomal protein l37 (11 kDa, Protein from human)
Ubiquitin-40s ribosomal protein s27a (18 kDa, Protein from human)
Zinc ion (65 Da, Ligand)
Receptor of activated protein c kinase 1 (35 kDa, Protein from human)
40s ribosomal protein s28 (7 kDa, Protein from human)
60s ribosomal protein l17 (21 kDa, Protein from human)
18s rrna (603 kDa, RNA from human)
60s ribosomal protein l29 (17 kDa, Protein from human)
40s ribosomal protein s3 (26 kDa, Protein from human)

[Show more]

Sort by: Download

Showing 1 - 4 of 4. Page 1 of 1

Display: Statistics

Download

Select database:

EMDB [4]

Format:

Select the script type:

Shell (Unix-based) Batch (Windows-based)

Preview first 10

Field: