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EMBL

was set up in 1974 as Europe’s flagship laboratory for the life sciences – an intergovernmental organisation with more than 80 independent research groups covering the spectrum of molecular biology:

Research:

perform basic research in molecular biology

Services:

offer vital services to scientists in the member states

Training

scientists, students and visitors at all levels

Transfer

and development of technology

Develop

new instruments and methods

Integrating

life science research in Europe

More about EMBL

Six sites

represent EMBL in Europe.

Barcelona

Tissue biology and disease modelling

Grenoble

Structural biology

Hamburg

Structural biology

Heidelberg

Main laboratory

Hinxton

EMBL-EBI: European Bioinformatics Institute

Rome

Epigenetics and neurobiology

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sample_name:"POTASSIUM ION" AND author_orcid:"0000-0003-2081-4506"

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EMD-10958

Download Map 3D View

The structure of the small subunit of the mitoribosome from Neurospora crassa

Release date: Nov. 11, 2020
Resolution: 2.85 Å
EM Method: Single-particle
Fitted PDBs: 6yw5
Q-score: 0.592

Itoh Y, Naschberger A, Mortezaei N, Herrmann JM, Amunts A

Nat Commun (2020) 11 pp. 5187-5187 [ Pubmed: 33056988 DOI: doi:10.1038/s41467-020-18830-w ]

Sample:

Ms47 (10 kDa, Protein from Neurospora crassa OR74A)
Mitochondrial 37s ribosomal protein s17 (18 kDa, Protein from Neurospora crassa OR74A)
Ms26 (35 kDa, Protein from Neurospora crassa OR74A)
If1 (23 kDa, Protein from Neurospora crassa OR74A)
40s ribosomal protein s8 (17 kDa, Protein from Neurospora crassa OR74A)
Duf1713 domain-containing protein (38 kDa, Protein from Neurospora crassa OR74A)
37s ribosomal protein s5 (53 kDa, Protein from Neurospora crassa OR74A)
3-hydroxyisobutyryl-coa hydrolase, mitochondrial (56 kDa, Protein from Neurospora crassa OR74A)
Igr domain-containing protein (26 kDa, Protein from Neurospora crassa OR74A)
37s ribosomal protein s10, mitochondrial (30 kDa, Protein from Neurospora crassa OR74A)
Ribosomal protein s15 (35 kDa, Protein from Neurospora crassa OR74A)
Ribosomal protein s16, mitochondrial (12 kDa, Protein from Neurospora crassa OR74A)
Ribosomal_s7 domain-containing protein (33 kDa, Protein from Neurospora crassa OR74A)
Potassium ion (39 Da, Ligand)
Mito ribosomal protein s21 (25 kDa, Protein from Neurospora crassa OR74A)
Ms27 (44 kDa, Protein from Neurospora crassa OR74A)
Us2m (51 kDa, Protein from Neurospora crassa OR74A)
Ms46 (43 kDa, Protein from Neurospora crassa OR74A)
Adenosine-5'-triphosphate (507 Da, Ligand)
Ribosomal protein s5, mitochondrial (58 kDa, Protein from Neurospora crassa OR74A)
37s ribosomal protein s25, mitochondrial (29 kDa, Protein from Neurospora crassa OR74A)
16s rrna (600 kDa, RNA from Neurospora crassa OR74A)
Ms33 (12 kDa, Protein from Neurospora crassa OR74A)
Mito ribosomal protein s4 (51 kDa, Protein from Neurospora crassa OR74A)
Mitochondrial ribosomal protein dap3 (51 kDa, Protein from Neurospora crassa OR74A)
Fe superoxide dismutase (34 kDa, Protein from Neurospora crassa OR74A)
Magnesium ion (24 Da, Ligand)
Mitochondrial ribosomal protein s19 (10 kDa, Protein from Neurospora crassa OR74A)
Mito ribosomal protein s18 (28 kDa, Protein from Neurospora crassa OR74A)
37s ribosomal protein mrp10, mitochondrial (9 kDa, Protein from Neurospora crassa OR74A)
Mito ribosomal protein s6 (13 kDa, Protein from Neurospora crassa OR74A)
Mitoribosome of neurospora crassa (Complex from Neurospora crassa OR74A)
Mito ribosomal protein s2 (47 kDa, Protein from Neurospora crassa OR74A)
Mitochondrial 30s ribosomal protein s12 (18 kDa, Protein from Neurospora crassa OR74A)
Mitochondrial 40s ribosomal protein mrp2 (13 kDa, Protein from Neurospora crassa OR74A)
37s ribosomal protein s24, mitochondrial (44 kDa, Protein from Neurospora crassa OR74A)
Ms42 (39 kDa, Protein from Neurospora crassa OR74A)
Us9m (35 kDa, Protein from Neurospora crassa OR74A)
Mitochondrial ribosomal protein subunit s18 (42 kDa, Protein from Neurospora crassa OR74A)
40s ribosomal protein s13 (13 kDa, Protein from Neurospora crassa OR74A)

[Show more]

EMD-10965

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The structure of the mitoribosome from Neurospora crassa in the P/E tRNA bound state

Release date: Nov. 11, 2020
Resolution: 2.99 Å
EM Method: Single-particle
Fitted PDBs: 6ywe
Q-score: 0.575

Itoh Y, Naschberger A, Mortezaei N, Herrmann JM, Amunts A

Nat Commun (2020) 11 pp. 5187-5187 [ Pubmed: 33056988 DOI: doi:10.1038/s41467-020-18830-w ]

Sample:

23s rrna (1 MDa, RNA from Neurospora crassa)
Related to ribosomal protein s5 (mitochondrial) (53 kDa, Protein from Neurospora crassa)
Ribosomal_s7 domain-containing protein (33 kDa, Protein from Neurospora crassa)
Related to ribosomal protein yml20, mitochondrial (25 kDa, Protein from Neurospora crassa)
Ml50 (49 kDa, Protein from Neurospora crassa)
60s ribosomal protein l1, mitochondrial (33 kDa, Protein from Neurospora crassa)
Kow domain-containing protein (45 kDa, Protein from Neurospora crassa)
Ribosomal protein s19/s15 (10 kDa, Protein from Neurospora crassa)
Mitochondrial ribosomal protein dap3 (51 kDa, Protein from Neurospora crassa)
Ribosomal protein l14 (14 kDa, Protein from Neurospora crassa)
Us9m (35 kDa, Protein from Neurospora crassa)
Ul11m (16 kDa, Protein from Neurospora crassa)
Ribosomal_l9 domain-containing protein (33 kDa, Protein from Neurospora crassa)
Related to ribosomal protein l3, mitochondrial (41 kDa, Protein from Neurospora crassa)
Ml41 (11 kDa, Protein from Neurospora crassa)
60s ribosomal protein l2, mitochondrial (42 kDa, Protein from Neurospora crassa)
Bl33m (7 kDa, Protein from Neurospora crassa)
Ribosomal protein l15 (33 kDa, Protein from Neurospora crassa)
Ms46 (43 kDa, Protein from Neurospora crassa)
S4 rna-binding domain-containing protein (51 kDa, Protein from Neurospora crassa)
Us8m (17 kDa, Protein from Neurospora crassa)
Bl19m (28 kDa, Protein from Neurospora crassa)
60s ribosomal protein l4, variant (36 kDa, Protein from Neurospora crassa)
Related to ribosomal protein l34, mitochondrial (14 kDa, Protein from Neurospora crassa)
Ml67 (32 kDa, Protein from Neurospora crassa)
Mitoribosome of neurospora crassa in the p/e state (Complex from Neurospora crassa)
37s ribosomal protein s25, mitochondrial (29 kDa, Protein from Neurospora crassa)
Rnase iii domain-containing protein (29 kDa, Protein from Neurospora crassa)
Ribosomal protein s12 (18 kDa, Protein from Neurospora crassa)
37s ribosomal protein s24, mitochondrial (44 kDa, Protein from Neurospora crassa)
Potassium ion (39 Da, Ligand)
Related to ribosomal protein yml49, mitochondrial (23 kDa, Protein from Neurospora crassa)
Duf1713 domain-containing protein (38 kDa, Protein from Neurospora crassa)
Ml40 (41 kDa, Protein from Neurospora crassa)
Related to ribosomal protein yml11, mitochondrial (37 kDa, Protein from Neurospora crassa)
Probable ribosomal protein yml44, mitochondrial (11 kDa, Protein from Neurospora crassa)
Ribosomal protein s6 (13 kDa, Protein from Neurospora crassa)
Mitochondrial large ribosomal subunit (41 kDa, Protein from Neurospora crassa)
Ml54 (23 kDa, Protein from Neurospora crassa)
Ul23m (26 kDa, Protein from Neurospora crassa)
Ms45 (39 kDa, Protein from Neurospora crassa)
Probable ribosomal protein s13 (13 kDa, Protein from Neurospora crassa)
Translational machinery component (42 kDa, Protein from Neurospora crassa)
Mrp-l46 domain-containing protein (41 kDa, Protein from Neurospora crassa)
30s ribosomal protein s10, mitochondrial (30 kDa, Protein from Neurospora crassa)
Bs16m (12 kDa, Protein from Neurospora crassa)
Pebp-like protein (50 kDa, Protein from Neurospora crassa)
Ms27 (44 kDa, Protein from Neurospora crassa)
Us17m (18 kDa, Protein from Neurospora crassa)
Related to ribosomal protein l30 (18 kDa, Protein from Neurospora crassa)
Magnesium ion (24 Da, Ligand)
L51_s25_ci-b8 domain-containing protein (22 kDa, Protein from Neurospora crassa)
54s ribosomal protein l31, mitochondrial (13 kDa, Protein from Neurospora crassa)
Ul17m (22 kDa, Protein from Neurospora crassa)
Ul13m (20 kDa, Protein from Neurospora crassa)
Ribosomal protein (13 kDa, Protein from Neurospora crassa)
Ml49 (18 kDa, Protein from Neurospora crassa)
Trna p/e state (23 kDa, RNA from Neurospora crassa)
Mrna (3 kDa, RNA from Neurospora crassa)
Bl28m (31 kDa, Protein from Neurospora crassa)
Nicotinamide-adenine-dinucleotide (663 Da, Ligand)
Ribosomal protein s18 (28 kDa, Protein from Neurospora crassa)
Related to ribosomal protein yml32 (mitochondrial),mitochondrial ribosomal protein subunit l32 (14 kDa, Protein from Neurospora crassa)
Related to ribosomal protein yml36, mitochondrial (23 kDa, Protein from Neurospora crassa)
Related to ribosomal protein l16, mitochondrial (27 kDa, Protein from Neurospora crassa)
Related to ribosomal protein l5, mitochondrial (39 kDa, Protein from Neurospora crassa)
Bs21m (25 kDa, Protein from Neurospora crassa)
L51_s25_ci-b8 domain-containing protein (15 kDa, Protein from Neurospora crassa)
16s rrna (600 kDa, RNA from Neurospora crassa)
Ms26 (35 kDa, Protein from Neurospora crassa)
Spermine (202 Da, Ligand)
Mitochondrial 37s ribosomal protein mrp2 (13 kDa, Protein from Neurospora crassa)
Related to 60s ribosomal protein l2 (mitochondrial) (49 kDa, Protein from Neurospora crassa)
37s ribosomal protein mrp10, mitochondrial (9 kDa, Protein from Neurospora crassa)
3-hydroxyisobutyryl-coa hydrolase, mitochondrial (56 kDa, Protein from Neurospora crassa)
Ribonuclease iii (48 kDa, Protein from Neurospora crassa)
Zinc ion (65 Da, Ligand)
Mitoc_ml59 domain-containing protein (18 kDa, Protein from Neurospora crassa)
Related to ribosomal protein s15 (mitochondrial) (35 kDa, Protein from Neurospora crassa)
Ul6m (28 kDa, Protein from Neurospora crassa)
Adenosine-5'-triphosphate (507 Da, Ligand)
If1 (10 kDa, Protein from Neurospora crassa)
Mito ribosomal protein s2 (47 kDa, Protein from Neurospora crassa)
Protein fyv4, mitochondrial (26 kDa, Protein from Neurospora crassa)
Ribosomal protein s5 (58 kDa, Protein from Neurospora crassa)
Manganese and iron superoxide dismutase (34 kDa, Protein from Neurospora crassa)
54s ribosomal protein l4, mitochondrial (29 kDa, Protein from Neurospora crassa)
Ms33 (12 kDa, Protein from Neurospora crassa)
Bs1m (51 kDa, Protein from Neurospora crassa)

[Show more]

EMD-10973

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The structure of the large subunit of the mitoribosome from Neurospora crassa

Release date: Nov. 11, 2020
Resolution: 2.74 Å
EM Method: Single-particle
Fitted PDBs: 6yws
Q-score: 0.601

Itoh Y, Naschberger A, Mortezaei N, Herrmann JM, Amunts A

Nat Commun (2020) 11 pp. 5187-5187 [ Pubmed: 33056988 DOI: doi:10.1038/s41467-020-18830-w ]

Sample:

Mitochondrial ribosomal protein l43 (15 kDa, Protein from Neurospora crassa OR74A)
Mitochondrial ribosomal protein subunit l32 (14 kDa, Protein from Neurospora crassa OR74A)
Uncharacterized protein (49 kDa, Protein from Neurospora crassa OR74A)
Mitochondrial ribosomal protein subunit l23 (26 kDa, Protein from Neurospora crassa OR74A)
60s ribosomal protein l6 (28 kDa, Protein from Neurospora crassa OR74A)
Uncharacterized protein (11 kDa, Protein from Neurospora crassa OR74A)
50s ribosomal protein l17 (22 kDa, Protein from Neurospora crassa OR74A)
Uncharacterized protein (23 kDa, Protein from Neurospora crassa OR74A)
60s ribosomal protein l20 (25 kDa, Protein from Neurospora crassa OR74A)
Rnase iii domain-containing protein (29 kDa, Protein from Neurospora crassa OR74A)
54s ribosomal protein l4, mitochondrial (29 kDa, Protein from Neurospora crassa OR74A)
Ribosomal protein (13 kDa, Protein from Neurospora crassa OR74A)
Mitoc_ml59 domain-containing protein (18 kDa, Protein from Neurospora crassa OR74A)
Nicotinamide-adenine-dinucleotide (663 Da, Ligand)
50s ribosomal protein l30 (18 kDa, Protein from Neurospora crassa OR74A)
Uncharacterized protein (37 kDa, Protein from Neurospora crassa OR74A)
Mitochondrial large ribosomal subunit yml35 (50 kDa, Protein from Neurospora crassa OR74A)
Spermine (202 Da, Ligand)
Uncharacterized protein (18 kDa, Protein from Neurospora crassa OR74A)
Kow domain-containing protein (45 kDa, Protein from Neurospora crassa OR74A)
Potassium ion (39 Da, Ligand)
Uncharacterized protein (7 kDa, Protein from Neurospora crassa OR74A)
50s ribosomal protein l24 (31 kDa, Protein from Neurospora crassa OR74A)
Zinc ion (65 Da, Ligand)
60s ribosomal protein l16 (27 kDa, Protein from Neurospora crassa OR74A)
60s ribosomal protein l3 (41 kDa, Protein from Neurospora crassa OR74A)
Mitochondrial ribosomal protein (28 kDa, Protein from Neurospora crassa OR74A)
60s ribosomal protein l1 (33 kDa, Protein from Neurospora crassa OR74A)
Aconitate hydratase (23 kDa, Protein from Neurospora crassa OR74A)
Uncharacterized protein (41 kDa, Protein from Neurospora crassa OR74A)
Mitochondrial large ribosomal subunit (41 kDa, Protein from Neurospora crassa OR74A)
54s ribosomal protein l31, mitochondrial (13 kDa, Protein from Neurospora crassa OR74A)
Uncharacterized protein (23 kDa, Protein from Neurospora crassa OR74A)
Magnesium ion (24 Da, Ligand)
50s ribosomal protein l5 (39 kDa, Protein from Neurospora crassa OR74A)
60s ribosomal protein l2 (42 kDa, Protein from Neurospora crassa OR74A)
50s ribosomal subunit l30 (41 kDa, Protein from Neurospora crassa OR74A)
50s ribosomal protein l14 (14 kDa, Protein from Neurospora crassa OR74A)
Ribosomal protein l13 (20 kDa, Protein from Neurospora crassa OR74A)
Mitoribosome of neurospora crassa (Complex from Neurospora crassa OR74A)
60s ribosomal protein l4, variant (36 kDa, Protein from Neurospora crassa OR74A)
60s ribosomal protein l19 (16 kDa, Protein from Neurospora crassa OR74A)
Ribosomal_l9 domain-containing protein (33 kDa, Protein from Neurospora crassa OR74A)
Mitochondrial ribosomal protein l44 (11 kDa, Protein from Neurospora crassa OR74A)
Ribosomal protein l15 (33 kDa, Protein from Neurospora crassa OR74A)
Uncharacterized protein (32 kDa, Protein from Neurospora crassa OR74A)
L51_s25_ci-b8 domain-containing protein (22 kDa, Protein from Neurospora crassa OR74A)
Uncharacterized protein (49 kDa, Protein from Neurospora crassa OR74A)
Related to ribosomal protein l34, mitochondrial (14 kDa, Protein from Neurospora crassa OR74A)
Rna (2820-mer) (1 MDa, RNA from Neurospora crassa OR74A)
60s ribosomal protein l3 (48 kDa, Protein from Neurospora crassa OR74A)

[Show more]

EMD-10977

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The structure of the Atp25 bound assembly intermediate of the mitoribosome from Neurospora crassa

Release date: Nov. 11, 2020
Resolution: 3.03 Å
EM Method: Single-particle
Fitted PDBs: 6ywv
Q-score: 0.544

Itoh Y, Naschberger A, Mortezaei N, Herrmann JM, Amunts A

Nat Commun (2020) 11 pp. 5187-5187 [ Pubmed: 33056988 DOI: doi:10.1038/s41467-020-18830-w ]

Sample:

Mitochondrial ribosomal protein l43 (15 kDa, Protein from Neurospora crassa OR74A)
Mitochondrial ribosomal protein subunit l32 (14 kDa, Protein from Neurospora crassa OR74A)
Uncharacterized protein (49 kDa, Protein from Neurospora crassa OR74A)
Mitochondrial ribosomal protein subunit l23 (26 kDa, Protein from Neurospora crassa OR74A)
Assembly intermediate of the mitoribosome of neurospora crassa (Complex from Neurospora crassa OR74A)
60s ribosomal protein l6 (28 kDa, Protein from Neurospora crassa OR74A)
Uncharacterized protein (14 kDa, Protein from Neurospora crassa OR74A)
Uncharacterized protein (11 kDa, Protein from Neurospora crassa OR74A)
50s ribosomal protein l17 (22 kDa, Protein from Neurospora crassa OR74A)
Uncharacterized protein (23 kDa, Protein from Neurospora crassa OR74A)
60s ribosomal protein l20 (25 kDa, Protein from Neurospora crassa OR74A)
Rnase iii domain-containing protein (29 kDa, Protein from Neurospora crassa OR74A)
54s ribosomal protein l4, mitochondrial (29 kDa, Protein from Neurospora crassa OR74A)
23 s rrna (1 MDa, RNA from Neurospora crassa OR74A)
Ribosomal protein (13 kDa, Protein from Neurospora crassa OR74A)
Nicotinamide-adenine-dinucleotide (663 Da, Ligand)
50s ribosomal subunit protein l15 (33 kDa, Protein from Neurospora crassa OR74A)
50s ribosomal protein l30 (18 kDa, Protein from Neurospora crassa OR74A)
Uncharacterized protein (37 kDa, Protein from Neurospora crassa OR74A)
Mitochondrial large ribosomal subunit yml35 (50 kDa, Protein from Neurospora crassa OR74A)
Spermine (202 Da, Ligand)
Uncharacterized protein (18 kDa, Protein from Neurospora crassa OR74A)
Kow domain-containing protein (45 kDa, Protein from Neurospora crassa OR74A)
Potassium ion (39 Da, Ligand)
Uncharacterized protein (7 kDa, Protein from Neurospora crassa OR74A)
50s ribosomal protein l24 (31 kDa, Protein from Neurospora crassa OR74A)
Zinc ion (65 Da, Ligand)
60s ribosomal protein l16 (27 kDa, Protein from Neurospora crassa OR74A)
60s ribosomal protein l3 (41 kDa, Protein from Neurospora crassa OR74A)
Mitochondrial ribosomal protein (28 kDa, Protein from Neurospora crassa OR74A)
Atpase synthesis protein 25, mitochondrial (77 kDa, Protein from Neurospora crassa OR74A)
Aconitate hydratase (23 kDa, Protein from Neurospora crassa OR74A)
Uncharacterized protein (41 kDa, Protein from Neurospora crassa OR74A)
Mitochondrial large ribosomal subunit (41 kDa, Protein from Neurospora crassa OR74A)
54s ribosomal protein l31, mitochondrial (13 kDa, Protein from Neurospora crassa OR74A)
Uncharacterized protein (23 kDa, Protein from Neurospora crassa OR74A)
Magnesium ion (24 Da, Ligand)
50s ribosomal protein l5 (39 kDa, Protein from Neurospora crassa OR74A)
60s ribosomal protein l2 (42 kDa, Protein from Neurospora crassa OR74A)
50s ribosomal subunit l30 (41 kDa, Protein from Neurospora crassa OR74A)
50s ribosomal protein l14 (14 kDa, Protein from Neurospora crassa OR74A)
Ribosomal protein l13 (20 kDa, Protein from Neurospora crassa OR74A)
60s ribosomal protein l4, variant (36 kDa, Protein from Neurospora crassa OR74A)
60s ribosomal protein l19 (16 kDa, Protein from Neurospora crassa OR74A)
Mitochondrial ribosomal protein l44 (11 kDa, Protein from Neurospora crassa OR74A)
Uncharacterized protein (32 kDa, Protein from Neurospora crassa OR74A)
Uncharacterized protein (49 kDa, Protein from Neurospora crassa OR74A)
60s ribosomal protein l3 (48 kDa, Protein from Neurospora crassa OR74A)
Mitochondrial 60s ribosomal protein l25 (18 kDa, Protein from Neurospora crassa OR74A)

[Show more]

EMD-10978

Download Map 3D View

The structure of the mitoribosome from Neurospora crassa with tRNA bound to the E-site

Release date: Nov. 11, 2020
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 6ywx
Q-score: 0.546

Itoh Y, Naschberger A, Mortezaei N, Herrmann JM, Amunts A

Nat Commun (2020) 11 pp. 5187-5187 [ Pubmed: 33056988 DOI: doi:10.1038/s41467-020-18830-w ]

Sample:

Mitochondrial ribosomal protein subunit l23 (26 kDa, Protein from Neurospora crassa OR74A)
60s ribosomal protein l6 (28 kDa, Protein from Neurospora crassa OR74A)
Ml50 (49 kDa, Protein from Neurospora crassa OR74A)
54s ribosomal protein l4, mitochondrial (29 kDa, Protein from Neurospora crassa OR74A)
Ribosomal protein (13 kDa, Protein from Neurospora crassa OR74A)
Ms45 (39 kDa, Protein from Neurospora crassa OR74A)
50s ribosomal subunit protein l15 (33 kDa, Protein from Neurospora crassa OR74A)
Ribosomal_s7 domain-containing protein (33 kDa, Protein from Neurospora crassa OR74A)
60s ribosomal protein l16 (27 kDa, Protein from Neurospora crassa OR74A)
Bl27m (49 kDa, Protein from Neurospora crassa OR74A)
60s ribosomal protein l1 (33 kDa, Protein from Neurospora crassa OR74A)
Mitochondrial large ribosomal subunit (41 kDa, Protein from Neurospora crassa OR74A)
Ms33 (12 kDa, Protein from Neurospora crassa OR74A)
Mito ribosomal protein s6 (13 kDa, Protein from Neurospora crassa OR74A)
60s ribosomal protein l4, variant (36 kDa, Protein from Neurospora crassa OR74A)
37s ribosomal protein s24, mitochondrial (44 kDa, Protein from Neurospora crassa OR74A)
Mitochondrial 60s ribosomal protein l25 (18 kDa, Protein from Neurospora crassa OR74A)
Mitochondrial 37s ribosomal protein s17 (18 kDa, Protein from Neurospora crassa OR74A)
Ms26 (35 kDa, Protein from Neurospora crassa OR74A)
Ml41 (11 kDa, Protein from Neurospora crassa OR74A)
37s ribosomal protein s10, mitochondrial (30 kDa, Protein from Neurospora crassa OR74A)
50s ribosomal protein l17 (22 kDa, Protein from Neurospora crassa OR74A)
Ribosomal protein s15 (35 kDa, Protein from Neurospora crassa OR74A)
Trna e-site (19 kDa, RNA from Neurospora crassa OR74A)
Ribosomal protein s16, mitochondrial (12 kDa, Protein from Neurospora crassa OR74A)
Potassium ion (39 Da, Ligand)
37s ribosomal protein s25, mitochondrial (29 kDa, Protein from Neurospora crassa OR74A)
60s ribosomal protein l20 (25 kDa, Protein from Neurospora crassa OR74A)
Mitochondrial ribosomal protein dap3 (51 kDa, Protein from Neurospora crassa OR74A)
Ml49 (18 kDa, Protein from Neurospora crassa OR74A)
Mitochondrial ribosomal protein s19 (10 kDa, Protein from Neurospora crassa OR74A)
Mito ribosomal protein s18 (28 kDa, Protein from Neurospora crassa OR74A)
37s ribosomal protein mrp10, mitochondrial (9 kDa, Protein from Neurospora crassa OR74A)
Ul10m (37 kDa, Protein from Neurospora crassa OR74A)
60s ribosomal protein l19 (16 kDa, Protein from Neurospora crassa OR74A)
50s ribosomal protein l30 (18 kDa, Protein from Neurospora crassa OR74A)
Aconitate hydratase (23 kDa, Protein from Neurospora crassa OR74A)
Mitochondrial 40s ribosomal protein mrp2 (13 kDa, Protein from Neurospora crassa OR74A)
40s ribosomal protein s13 (13 kDa, Protein from Neurospora crassa OR74A)
Ml67 (32 kDa, Protein from Neurospora crassa OR74A)
37s ribosomal protein s9, mitochondrial (35 kDa, Protein from Neurospora crassa OR74A)
Duf1713 domain-containing protein (38 kDa, Protein from Neurospora crassa OR74A)
3-hydroxyisobutyryl-coa hydrolase, mitochondrial (56 kDa, Protein from Neurospora crassa OR74A)
Igr domain-containing protein (26 kDa, Protein from Neurospora crassa OR74A)
Mitoribosome of neurospora crassa with trna in the e-site (Complex from Neurospora crassa OR74A)
Mito ribosomal protein s21 (25 kDa, Protein from Neurospora crassa OR74A)
23s rrna (1 MDa, RNA from Neurospora crassa OR74A)
Mito ribosomal protein s4 (51 kDa, Protein from Neurospora crassa OR74A)
Magnesium ion (24 Da, Ligand)
50s ribosomal subunit l30 (41 kDa, Protein from Neurospora crassa OR74A)
Ml54 (23 kDa, Protein from Neurospora crassa OR74A)
Bs1m (51 kDa, Protein from Neurospora crassa OR74A)
If1 (10 kDa, Protein from Neurospora crassa OR74A)
Ribosomal_l9 domain-containing protein (33 kDa, Protein from Neurospora crassa OR74A)
Kow domain-containing protein (45 kDa, Protein from Neurospora crassa OR74A)
Mitochondrial ribosomal protein l44 (11 kDa, Protein from Neurospora crassa OR74A)
Mito ribosomal protein s2 (47 kDa, Protein from Neurospora crassa OR74A)
Mitochondrial ribosomal protein subunit s18 (42 kDa, Protein from Neurospora crassa OR74A)
Ml40 (41 kDa, Protein from Neurospora crassa OR74A)
Mitochondrial ribosomal protein subunit l32 (14 kDa, Protein from Neurospora crassa OR74A)
Nicotinamide-adenine-dinucleotide (663 Da, Ligand)
50s ribosomal protein l14 (14 kDa, Protein from Neurospora crassa OR74A)
40s ribosomal protein s8 (17 kDa, Protein from Neurospora crassa OR74A)
Rnase iii domain-containing protein (29 kDa, Protein from Neurospora crassa OR74A)
Bl33m (7 kDa, Protein from Neurospora crassa OR74A)
37s ribosomal protein s5 (53 kDa, Protein from Neurospora crassa OR74A)
Mitochondrial large ribosomal subunit yml35 (50 kDa, Protein from Neurospora crassa OR74A)
Bl31m (23 kDa, Protein from Neurospora crassa OR74A)
Spermine (202 Da, Ligand)
50s ribosomal protein l24 (31 kDa, Protein from Neurospora crassa OR74A)
Zinc ion (65 Da, Ligand)
60s ribosomal protein l3 (41 kDa, Protein from Neurospora crassa OR74A)
Mitochondrial ribosomal protein (28 kDa, Protein from Neurospora crassa OR74A)
Ms27 (44 kDa, Protein from Neurospora crassa OR74A)
Mitochondrial ribosomal protein l43 (15 kDa, Protein from Neurospora crassa OR74A)
Ms46 (43 kDa, Protein from Neurospora crassa OR74A)
Adenosine-5'-triphosphate (507 Da, Ligand)
Ribosomal protein s5, mitochondrial (58 kDa, Protein from Neurospora crassa OR74A)
54s ribosomal protein l31, mitochondrial (13 kDa, Protein from Neurospora crassa OR74A)
16s rrna (600 kDa, RNA from Neurospora crassa OR74A)
Fe superoxide dismutase (34 kDa, Protein from Neurospora crassa OR74A)
50s ribosomal protein l5 (39 kDa, Protein from Neurospora crassa OR74A)
60s ribosomal protein l2 (42 kDa, Protein from Neurospora crassa OR74A)
Ribosomal protein l13 (20 kDa, Protein from Neurospora crassa OR74A)
L51_s25_ci-b8 domain-containing protein (22 kDa, Protein from Neurospora crassa OR74A)
Mitochondrial 30s ribosomal protein s12 (18 kDa, Protein from Neurospora crassa OR74A)
Related to ribosomal protein l34, mitochondrial (14 kDa, Protein from Neurospora crassa OR74A)
60s ribosomal protein l3 (48 kDa, Protein from Neurospora crassa OR74A)

[Show more]

EMD-10985

Download Map 3D View

The structure of the mitoribosome from Neurospora crassa with bound tRNA at the P-site

Release date: Nov. 11, 2020
Resolution: 3.05 Å
EM Method: Single-particle
Fitted PDBs: 6ywy
Q-score: 0.56

Itoh Y, Naschberger A, Mortezaei N, Herrmann JM, Amunts A

Nat Commun (2020) 11 pp. 5187-5187 [ Pubmed: 33056988 DOI: doi:10.1038/s41467-020-18830-w ]

Sample:

23s rrna (1 MDa, RNA from Neurospora crassa)
Related to ribosomal protein s5 (mitochondrial) (53 kDa, Protein from Neurospora crassa)
Ribosomal_s7 domain-containing protein (33 kDa, Protein from Neurospora crassa)
Related to ribosomal protein yml20, mitochondrial (25 kDa, Protein from Neurospora crassa)
Ml50 (49 kDa, Protein from Neurospora crassa)
60s ribosomal protein l1, mitochondrial (33 kDa, Protein from Neurospora crassa)
Kow domain-containing protein (45 kDa, Protein from Neurospora crassa)
Ribosomal protein s19/s15 (10 kDa, Protein from Neurospora crassa)
Mitochondrial ribosomal protein dap3 (51 kDa, Protein from Neurospora crassa)
Ribosomal protein l14 (14 kDa, Protein from Neurospora crassa)
Us9m (35 kDa, Protein from Neurospora crassa)
Ul11m (16 kDa, Protein from Neurospora crassa)
Ribosomal_l9 domain-containing protein (33 kDa, Protein from Neurospora crassa)
Related to ribosomal protein l3, mitochondrial (41 kDa, Protein from Neurospora crassa)
Ml41 (11 kDa, Protein from Neurospora crassa)
Related to ribosomal protein yml32 (mitochondrial) (14 kDa, Protein from Neurospora crassa)
60s ribosomal protein l2, mitochondrial (42 kDa, Protein from Neurospora crassa)
Bl33m (7 kDa, Protein from Neurospora crassa)
Ribosomal protein l15 (33 kDa, Protein from Neurospora crassa)
Ms46 (43 kDa, Protein from Neurospora crassa)
S4 rna-binding domain-containing protein (51 kDa, Protein from Neurospora crassa)
Us8m (17 kDa, Protein from Neurospora crassa)
Bl19m (28 kDa, Protein from Neurospora crassa)
60s ribosomal protein l4, variant (36 kDa, Protein from Neurospora crassa)
Related to ribosomal protein l34, mitochondrial (14 kDa, Protein from Neurospora crassa)
Ml67 (32 kDa, Protein from Neurospora crassa)
P-site-trna (23 kDa, RNA from Neurospora crassa)
37s ribosomal protein s25, mitochondrial (29 kDa, Protein from Neurospora crassa)
Rnase iii domain-containing protein (29 kDa, Protein from Neurospora crassa)
Ribosomal protein s12 (18 kDa, Protein from Neurospora crassa)
37s ribosomal protein s24, mitochondrial (44 kDa, Protein from Neurospora crassa)
Potassium ion (39 Da, Ligand)
Related to ribosomal protein yml49, mitochondrial (23 kDa, Protein from Neurospora crassa)
Duf1713 domain-containing protein (38 kDa, Protein from Neurospora crassa)
Mrna (3 kDa, RNA from Neurospora crassa)
Ml40 (41 kDa, Protein from Neurospora crassa)
Related to ribosomal protein yml11, mitochondrial (37 kDa, Protein from Neurospora crassa)
Probable ribosomal protein yml44, mitochondrial (11 kDa, Protein from Neurospora crassa)
Ribosomal protein s6 (13 kDa, Protein from Neurospora crassa)
Mitochondrial large ribosomal subunit (41 kDa, Protein from Neurospora crassa)
Ml54 (23 kDa, Protein from Neurospora crassa)
Ul23m (26 kDa, Protein from Neurospora crassa)
Ms45 (39 kDa, Protein from Neurospora crassa)
Probable ribosomal protein s13 (13 kDa, Protein from Neurospora crassa)
Translational machinery component (42 kDa, Protein from Neurospora crassa)
30s ribosomal protein s10, mitochondrial (30 kDa, Protein from Neurospora crassa)
Bs16m (12 kDa, Protein from Neurospora crassa)
Pebp-like protein (50 kDa, Protein from Neurospora crassa)
Ms27 (44 kDa, Protein from Neurospora crassa)
Us17m (18 kDa, Protein from Neurospora crassa)
Related to ribosomal protein l30 (18 kDa, Protein from Neurospora crassa)
Magnesium ion (24 Da, Ligand)
L51_s25_ci-b8 domain-containing protein (22 kDa, Protein from Neurospora crassa)
54s ribosomal protein l31, mitochondrial (13 kDa, Protein from Neurospora crassa)
Ul17m (22 kDa, Protein from Neurospora crassa)
Ul13m (20 kDa, Protein from Neurospora crassa)
Ribosomal protein (13 kDa, Protein from Neurospora crassa)
Ml49 (18 kDa, Protein from Neurospora crassa)
Mitoribosome of neurospora crassa in the trna bound state (p-site). (Complex from Neurospora crassa)
Bl28m (31 kDa, Protein from Neurospora crassa)
Nicotinamide-adenine-dinucleotide (663 Da, Ligand)
Ribosomal protein s18 (28 kDa, Protein from Neurospora crassa)
Related to ribosomal protein yml36, mitochondrial (23 kDa, Protein from Neurospora crassa)
Related to ribosomal protein l16, mitochondrial (27 kDa, Protein from Neurospora crassa)
Related to ribosomal protein l5, mitochondrial (39 kDa, Protein from Neurospora crassa)
Bs21m (25 kDa, Protein from Neurospora crassa)
L51_s25_ci-b8 domain-containing protein (15 kDa, Protein from Neurospora crassa)
Poly-peptide (515 Da, Protein from Neurospora crassa)
16s rrna (600 kDa, RNA from Neurospora crassa)
Ms26 (35 kDa, Protein from Neurospora crassa)
Spermine (202 Da, Ligand)
Mitochondrial 37s ribosomal protein mrp2 (13 kDa, Protein from Neurospora crassa)
Related to 60s ribosomal protein l2 (mitochondrial) (49 kDa, Protein from Neurospora crassa)
37s ribosomal protein mrp10, mitochondrial (9 kDa, Protein from Neurospora crassa)
3-hydroxyisobutyryl-coa hydrolase, mitochondrial (56 kDa, Protein from Neurospora crassa)
Ribonuclease iii (48 kDa, Protein from Neurospora crassa)
Zinc ion (65 Da, Ligand)
Mitoc_ml59 domain-containing protein (18 kDa, Protein from Neurospora crassa)
Related to ribosomal protein s15 (mitochondrial) (35 kDa, Protein from Neurospora crassa)
Ml46 (41 kDa, Protein from Neurospora crassa)
Ul6m (28 kDa, Protein from Neurospora crassa)
Adenosine-5'-triphosphate (507 Da, Ligand)
If1 (10 kDa, Protein from Neurospora crassa)
Mito ribosomal protein s2 (47 kDa, Protein from Neurospora crassa)
Protein fyv4, mitochondrial (26 kDa, Protein from Neurospora crassa)
Ribosomal protein s5 (58 kDa, Protein from Neurospora crassa)
Manganese and iron superoxide dismutase (34 kDa, Protein from Neurospora crassa)
54s ribosomal protein l4, mitochondrial (29 kDa, Protein from Neurospora crassa)
Ms33 (12 kDa, Protein from Neurospora crassa)
Bs1m (51 kDa, Protein from Neurospora crassa)

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