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EMBL

was set up in 1974 as Europe’s flagship laboratory for the life sciences – an intergovernmental organisation with more than 80 independent research groups covering the spectrum of molecular biology:

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perform basic research in molecular biology

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offer vital services to scientists in the member states

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scientists, students and visitors at all levels

Transfer

and development of technology

Develop

new instruments and methods

Integrating

life science research in Europe

More about EMBL

Six sites

represent EMBL in Europe.

Barcelona

Tissue biology and disease modelling

Grenoble

Structural biology

Hamburg

Structural biology

Heidelberg

Main laboratory

Hinxton

EMBL-EBI: European Bioinformatics Institute

Rome

Epigenetics and neurobiology

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sample_name:"IRON/SULFUR CLUSTER" AND natural_source_ncbi_code:"2949"

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EMD-36742

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PSI-AcpPCI supercomplex from Symbiodinium

Release date: Feb. 28, 2024
Resolution: 2.99 Å
EM Method: Single-particle
Fitted PDBs: 8jze
Q-score: 0.518

Li X, Li Z, Wang F, Zhao S, Xu C, Mao Z, Duan J, Feng Y, Yang Y, Shen L, Wang G, Yang Y, Yu LJ, Sang M, Han G, Wang X, Kuang T, Shen JR, Wang W

PNAS (2024) 121 pp. e2315476121-e2315476121 [ Pubmed: 38319970 DOI: doi:10.1073/pnas.2315476121 ]

Sample:

Phylloquinone (450 Da, Ligand)
Photosystem i psar (15 kDa, Protein from Symbiodinium)
Photosystem i psal (27 kDa, Protein from Symbiodinium)
Photosystem i psad (24 kDa, Protein from Symbiodinium)
Chlorophyll a-chlorophyll c-peridinin-protein-complex i-6, acppci-6 (19 kDa, Protein from Symbiodinium)
Chlorophyll a (893 Da, Ligand)
Photosystem i psaa (75 kDa, Protein from Symbiodinium)
[(1~{s},5~{r})-3,3,5-trimethyl-5-oxidanyl-4-[(3~{e},5~{e},7~{e},9~{e},11~{e},13~{e},15~{e},17~{e})-3,7,12,16-tetramethyl-18-[(1~{s},4~{s},6~{r})-2,2,6-trimethyl-4-oxidanyl-7-oxabicyclo[4.1.0]heptan-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenylidene]cyclohexyl] ethanoate (642 Da, Ligand)
Photosystem i psae (8 kDa, Protein from Symbiodinium)
Photosystem i psai (13 kDa, Protein from Symbiodinium)
1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
Beta-carotene (536 Da, Ligand)
Photosystem i psab (74 kDa, Protein from Symbiodinium)
Chlorophyll a-chlorophyll c-peridinin-protein-complex i-12, acppci-12 (17 kDa, Protein from Symbiodinium)
Peridinin (630 Da, Ligand)
Chlorophyll a-chlorophyll c-peridinin-protein-complex i-3, acppci-3 (22 kDa, Protein from Symbiodinium)
Chlorophyll a-chlorophyll c-peridinin-protein-complex i-10, acppci-10 (20 kDa, Protein from Symbiodinium)
Chlorophyll a-chlorophyll c-peridinin-protein-complex i-11, acppci-11 (21 kDa, Protein from Symbiodinium)
Chlorophyll a-chlorophyll c-peridinin-protein-complex i-4, acppci-4 (19 kDa, Protein from Symbiodinium)
(3s,3'r,5r,6s,7cis)-7',8'-didehydro-5,6-dihydro-5,6-epoxy-beta,beta-carotene-3,3'-diol (582 Da, Ligand)
Chlorophyll c1 (610 Da, Ligand)
Chlorophyll a-chlorophyll c-peridinin-protein-complex i-8, acppci-8 (24 kDa, Protein from Symbiodinium)
Psi-acppci supercomplex from symbiodinium (Complex from Symbiodinium)
Chlorophyll a-chlorophyll c-peridinin-protein-complex i-15, acppci-15 (17 kDa, Protein from Symbiodinium)
Chlorophyll a-chlorophyll c-peridinin-protein-complex i-7, acppci-7 (21 kDa, Protein from Symbiodinium)
Chlorophyll a-chlorophyll c-peridinin-protein-complex i-14, acppci-14 (17 kDa, Protein from Symbiodinium)
Chlorophyll a-chlorophyll c-peridinin-protein-complex i-13, acppci-13 (17 kDa, Protein from Symbiodinium)
1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
Chlorophyll a-chlorophyll c-peridinin-protein-complex i-9, acppci-9 (17 kDa, Protein from Symbiodinium)
Iron/sulfur cluster (351 Da, Ligand)
Photosystem i psam (8 kDa, Protein from Symbiodinium)
Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
Photosystem i unk (11 kDa, Protein from Symbiodinium)
Photosystem i psac (9 kDa, Protein from Symbiodinium)
Photosystem i psaf (20 kDa, Protein from Symbiodinium)
Photosystem i psaj (11 kDa, Protein from Symbiodinium)
Chlorophyll a-chlorophyll c-peridinin-protein-complex i-2, acppci-2 (19 kDa, Protein from Symbiodinium)
Photosystem i unk (6 kDa, Protein from Symbiodinium)
Chlorophyll a-chlorophyll c-peridinin-protein-complex i-5, acppci-5 (20 kDa, Protein from Symbiodinium)

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EMD-36743

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PSI-AcpPCI supercomplex from Symbiodinium

Release date: Feb. 28, 2024
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 8jzf
Q-score: 0.537

Li X, Li Z, Wang F, Zhao S, Xu C, Mao Z, Duan J, Feng Y, Yang Y, Shen L, Wang G, Yang Y, Yu LJ, Sang M, Han G, Wang X, Kuang T, Shen JR, Wang W

PNAS (2024) 121 pp. e2315476121-e2315476121 [ Pubmed: 38319970 DOI: doi:10.1073/pnas.2315476121 ]

Sample:

Phylloquinone (450 Da, Ligand)
Photosystem i psar (15 kDa, Protein from Symbiodinium)
Photosystem i psal (27 kDa, Protein from Symbiodinium)
Photosystem i psad (24 kDa, Protein from Symbiodinium)
Chlorophyll a-chlorophyll c-peridinin-protein-complex i-6, acppci-6 (19 kDa, Protein from Symbiodinium)
Chlorophyll a (893 Da, Ligand)
Photosystem i psaa (75 kDa, Protein from Symbiodinium)
[(1~{s},5~{r})-3,3,5-trimethyl-5-oxidanyl-4-[(3~{e},5~{e},7~{e},9~{e},11~{e},13~{e},15~{e},17~{e})-3,7,12,16-tetramethyl-18-[(1~{s},4~{s},6~{r})-2,2,6-trimethyl-4-oxidanyl-7-oxabicyclo[4.1.0]heptan-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenylidene]cyclohexyl] ethanoate (642 Da, Ligand)
Photosystem i psae (8 kDa, Protein from Symbiodinium)
Photosystem i psai (13 kDa, Protein from Symbiodinium)
1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
Beta-carotene (536 Da, Ligand)
Photosystem i psab (74 kDa, Protein from Symbiodinium)
Chlorophyll a-chlorophyll c-peridinin-protein-complex i-12, acppci-12 (17 kDa, Protein from Symbiodinium)
Peridinin (630 Da, Ligand)
Chlorophyll a-chlorophyll c-peridinin-protein-complex i-3, acppci-3 (22 kDa, Protein from Symbiodinium)
Chlorophyll a-chlorophyll c-peridinin-protein-complex i-10, acppci-10 (20 kDa, Protein from Symbiodinium)
Chlorophyll a-chlorophyll c-peridinin-protein-complex i-11, acppci-11 (21 kDa, Protein from Symbiodinium)
Chlorophyll a-chlorophyll c-peridinin-protein-complex i-4, acppci-4 (19 kDa, Protein from Symbiodinium)
(3s,3'r,5r,6s,7cis)-7',8'-didehydro-5,6-dihydro-5,6-epoxy-beta,beta-carotene-3,3'-diol (582 Da, Ligand)
Chlorophyll c1 (610 Da, Ligand)
Chlorophyll a-chlorophyll c-peridinin-protein-complex i-8, acppci-8 (24 kDa, Protein from Symbiodinium)
Psi-acppci supercomplex from symbiodinium (Complex from Symbiodinium)
Chlorophyll a-chlorophyll c-peridinin-protein-complex i-7, acppci-7 (21 kDa, Protein from Symbiodinium)
Chlorophyll a-chlorophyll c-peridinin-protein-complex i-13, acppci-13 (17 kDa, Protein from Symbiodinium)
1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
Chlorophyll a-chlorophyll c-peridinin-protein-complex i-9, acppci-9 (17 kDa, Protein from Symbiodinium)
Iron/sulfur cluster (351 Da, Ligand)
Photosystem i psam (8 kDa, Protein from Symbiodinium)
Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
Photosystem i unk (11 kDa, Protein from Symbiodinium)
Photosystem i psac (9 kDa, Protein from Symbiodinium)
Photosystem i psaf (20 kDa, Protein from Symbiodinium)
Photosystem i psaj (11 kDa, Protein from Symbiodinium)
Chlorophyll a-chlorophyll c-peridinin-protein-complex i-2, acppci-2 (19 kDa, Protein from Symbiodinium)
Photosystem i unk (6 kDa, Protein from Symbiodinium)
Chlorophyll a-chlorophyll c-peridinin-protein-complex i-5, acppci-5 (20 kDa, Protein from Symbiodinium)

[Show more]

Sort by: Download

Showing 1 - 2 of 2. Page 1 of 1

Display: Statistics

Download

Select database:

EMDB [2]

Format:

Select the script type:

Shell (Unix-based) Batch (Windows-based)

Preview first 10

Field: