The structure of PSI-CAC(L-14)of R.salina at 2.7 angstroms resolution
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 8wm6
Q-score: 0.62
Zhang S, Si L, Su X, Zhao X, An X, Li M
Commun Biol (2024) 7 pp. 560-560 [ Pubmed: 38734819 DOI: doi:10.1038/s42003-024-06268-5 ]
- Photosystem i reaction center subunit viii (3 kDa, Protein from Rhodomonas salina)
- Photosystem i reaction center subunit psak (8 kDa, Protein from Rhodomonas salina)
- Photosystem i reaction center subunit ii (15 kDa, Protein from Rhodomonas salina)
- Phylloquinone (450 Da, Ligand)
- Psaq (23 kDa, Protein from Rhodomonas salina)
- Cac-b (23 kDa, Protein from Rhodomonas salina)
- Chlorophyll a (893 Da, Ligand)
- Photosystem i reaction center subunit ix (4 kDa, Protein from Rhodomonas salina)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Chlorophyll c2 (608 Da, Ligand)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Cac-f (22 kDa, Protein from Rhodomonas salina)
- Cac-k (25 kDa, Protein from Rhodomonas salina)
- Psi-cac (800 kDa, Complex from Rhodomonas salina)
- Photosystem i p700 chlorophyll a apoprotein a1 (83 kDa, Protein from Rhodomonas salina)
- Photosystem i reaction center subunit xii (3 kDa, Protein from Rhodomonas salina)
- Cac-d (22 kDa, Protein from Rhodomonas salina)
- Cac-n (22 kDa, Protein from Rhodomonas salina)
- 1,3,3-trimethyl-2-[(1e,3e,5e,7e,9e,11e,13e,15e,17e)-3,7,12,16-tetramethyl-18-[(1r)-2,6,6-trimethylcyclohex-2-en-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenyl]cyclohexene (536 Da, Ligand)
- Photosystem i iron-sulfur center (8 kDa, Protein from Rhodomonas salina)
- Chain s (27 kDa, Protein from Rhodomonas salina)
- Photosystem i p700 chlorophyll a apoprotein a2 (82 kDa, Protein from Rhodomonas salina)
- Water (18 Da, Ligand)
- (1~{r})-3,5,5-trimethyl-4-[(3~{e},5~{e},7~{e},9~{e},11~{e},13~{e},15~{e},17~{e})-3,7,12,16-tetramethyl-18-(2,6,6-trimethylcyclohexen-1-yl)octadeca-3,5,7,9,11,13,15,17-octaen-1-ynyl]cyclohex-3-en-1-ol (550 Da, Ligand)
- Dodecyl-alpha-d-maltoside (510 Da, Ligand)
- Photosystem i reaction center subunit iv (7 kDa, Protein from Rhodomonas salina)
- Cac-h (23 kDa, Protein from Rhodomonas salina)
- Iron/sulfur cluster (351 Da, Ligand)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Cac-a (23 kDa, Protein from Rhodomonas salina)
- Cac-i (23 kDa, Protein from Rhodomonas salina)
- Psar (13 kDa, Protein from Rhodomonas salina)
- Cac-e (21 kDa, Protein from Rhodomonas salina)
- Photosystem i reaction center subunit iii (20 kDa, Protein from Rhodomonas salina)
- Cac-c (23 kDa, Protein from Rhodomonas salina)
- Cac-l (25 kDa, Protein from Rhodomonas salina)
- (1~{r})-3,5,5-trimethyl-4-[(3~{e},5~{e},7~{e},9~{e},11~{e},13~{e},15~{e})-3,7,12,16-tetramethyl-18-[(4~{r})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-3,5,7,9,11,13,15-heptaen-1,17-diynyl]cyclohex-3-en-1-ol (564 Da, Ligand)
- Psao (15 kDa, Protein from Rhodomonas salina)
- Photosystem i reaction center subunit xi (16 kDa, Protein from Rhodomonas salina)
- Dodecyl-beta-d-maltoside (510 Da, Ligand)
- Cac-g (26 kDa, Protein from Rhodomonas salina)
structure of PSI-11CAC complex at Logrithmic growth phase
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 8wmj
Q-score: 0.553
Zhang S, Si L, Su X, Zhao X, An X, Li M
Commun Biol (2024) 7 pp. 560-560 [ Pubmed: 38734819 DOI: doi:10.1038/s42003-024-06268-5 ]
- Photosystem i reaction center subunit viii (3 kDa, Protein from Rhodomonas salina)
- Photosystem i reaction center subunit psak (8 kDa, Protein from Rhodomonas salina)
- Photosystem i reaction center subunit ii (15 kDa, Protein from Rhodomonas salina)
- Phylloquinone (450 Da, Ligand)
- Psaq (23 kDa, Protein from Rhodomonas salina)
- Cac-k (25 kDa, Protein from Rhodomonas salina)
- Cac-c (23 kDa, Protein from Rhodomonas salina)
- Chlorophyll a (893 Da, Ligand)
- Photosystem i reaction center subunit ix (4 kDa, Protein from Rhodomonas salina)
- Cac-j (22 kDa, Protein from Rhodomonas salina)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Chlorophyll c2 (608 Da, Ligand)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Cac-l (25 kDa, Protein from Rhodomonas salina)
- Cac-b (23 kDa, Protein from Rhodomonas salina)
- Photosystem i p700 chlorophyll a apoprotein a1 (83 kDa, Protein from Rhodomonas salina)
- Photosystem i reaction center subunit xii (3 kDa, Protein from Rhodomonas salina)
- Cac-d (22 kDa, Protein from Rhodomonas salina)
- Psi-cac (Complex from Rhodomonas salina)
- 1,3,3-trimethyl-2-[(1e,3e,5e,7e,9e,11e,13e,15e,17e)-3,7,12,16-tetramethyl-18-[(1r)-2,6,6-trimethylcyclohex-2-en-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenyl]cyclohexene (536 Da, Ligand)
- Photosystem i iron-sulfur center (8 kDa, Protein from Rhodomonas salina)
- Chain s (27 kDa, Protein from Rhodomonas salina)
- Photosystem i p700 chlorophyll a apoprotein a2 (82 kDa, Protein from Rhodomonas salina)
- Water (18 Da, Ligand)
- Cac-i (23 kDa, Protein from Rhodomonas salina)
- (1~{r})-3,5,5-trimethyl-4-[(3~{e},5~{e},7~{e},9~{e},11~{e},13~{e},15~{e},17~{e})-3,7,12,16-tetramethyl-18-(2,6,6-trimethylcyclohexen-1-yl)octadeca-3,5,7,9,11,13,15,17-octaen-1-ynyl]cyclohex-3-en-1-ol (550 Da, Ligand)
- Dodecyl-alpha-d-maltoside (510 Da, Ligand)
- Cac-a (23 kDa, Protein from Rhodomonas salina)
- Photosystem i reaction center subunit iv (7 kDa, Protein from Rhodomonas salina)
- Iron/sulfur cluster (351 Da, Ligand)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Psar (13 kDa, Protein from Rhodomonas salina)
- Cac-n (22 kDa, Protein from Rhodomonas salina)
- Photosystem i reaction center subunit iii (20 kDa, Protein from Rhodomonas salina)
- (1~{r})-3,5,5-trimethyl-4-[(3~{e},5~{e},7~{e},9~{e},11~{e},13~{e},15~{e})-3,7,12,16-tetramethyl-18-[(4~{r})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-3,5,7,9,11,13,15-heptaen-1,17-diynyl]cyclohex-3-en-1-ol (564 Da, Ligand)
- Cac-h (23 kDa, Protein from Rhodomonas salina)
- Photosystem i reaction center subunit xi (16 kDa, Protein from Rhodomonas salina)
- Dodecyl-beta-d-maltoside (510 Da, Ligand)
The structure of PSI-14CAC complex at stationary growth phase
Resolution: 2.94 Å
EM Method: Single-particle
Fitted PDBs: 8wmv
Q-score: 0.555
Zhang S, Si L, Su X, Zhao X, An X, Li M
Commun Biol (2024) 7 pp. 560-560 [ Pubmed: 38734819 DOI: doi:10.1038/s42003-024-06268-5 ]
- Photosystem i reaction center subunit viii (3 kDa, Protein from Rhodomonas salina)
- Photosystem i reaction center subunit psak (8 kDa, Protein from Rhodomonas salina)
- Photosystem i reaction center subunit ii (15 kDa, Protein from Rhodomonas salina)
- Phylloquinone (450 Da, Ligand)
- Psi-14cac(l-phase) (Complex from Rhodomonas salina)
- Cac-e (21 kDa, Protein from Rhodomonas salina)
- Cac-k (25 kDa, Protein from Rhodomonas salina)
- Cac-c (23 kDa, Protein from Rhodomonas salina)
- Chlorophyll a (893 Da, Ligand)
- Photosystem i reaction center subunit ix (4 kDa, Protein from Rhodomonas salina)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Chlorophyll c2 (608 Da, Ligand)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Cac-m, cac-f (22 kDa, Protein from Rhodomonas salina)
- Cac-l (25 kDa, Protein from Rhodomonas salina)
- Cac-b (23 kDa, Protein from Rhodomonas salina)
- Photosystem i p700 chlorophyll a apoprotein a1 (83 kDa, Protein from Rhodomonas salina)
- Photosystem i reaction center subunit xii (3 kDa, Protein from Rhodomonas salina)
- Cac-d (22 kDa, Protein from Rhodomonas salina)
- 1,3,3-trimethyl-2-[(1e,3e,5e,7e,9e,11e,13e,15e,17e)-3,7,12,16-tetramethyl-18-[(1r)-2,6,6-trimethylcyclohex-2-en-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenyl]cyclohexene (536 Da, Ligand)
- Photosystem i iron-sulfur center (8 kDa, Protein from Rhodomonas salina)
- Chain s (27 kDa, Protein from Rhodomonas salina)
- Photosystem i p700 chlorophyll a apoprotein a2 (82 kDa, Protein from Rhodomonas salina)
- Water (18 Da, Ligand)
- Cac-g (26 kDa, Protein from Rhodomonas salina)
- Cac-i (23 kDa, Protein from Rhodomonas salina)
- (1~{r})-3,5,5-trimethyl-4-[(3~{e},5~{e},7~{e},9~{e},11~{e},13~{e},15~{e},17~{e})-3,7,12,16-tetramethyl-18-(2,6,6-trimethylcyclohexen-1-yl)octadeca-3,5,7,9,11,13,15,17-octaen-1-ynyl]cyclohex-3-en-1-ol (550 Da, Ligand)
- Dodecyl-alpha-d-maltoside (510 Da, Ligand)
- Cac-a (23 kDa, Protein from Rhodomonas salina)
- Photosystem i reaction center subunit iv (7 kDa, Protein from Rhodomonas salina)
- Iron/sulfur cluster (351 Da, Ligand)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Psar (13 kDa, Protein from Rhodomonas salina)
- Cac-n (22 kDa, Protein from Rhodomonas salina)
- Photosystem i reaction center subunit iii (20 kDa, Protein from Rhodomonas salina)
- (1~{r})-3,5,5-trimethyl-4-[(3~{e},5~{e},7~{e},9~{e},11~{e},13~{e},15~{e})-3,7,12,16-tetramethyl-18-[(4~{r})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-3,5,7,9,11,13,15-heptaen-1,17-diynyl]cyclohex-3-en-1-ol (564 Da, Ligand)
- Cac-h (23 kDa, Protein from Rhodomonas salina)
- Psao (15 kDa, Protein from Rhodomonas salina)
- Photosystem i reaction center subunit xi (16 kDa, Protein from Rhodomonas salina)
- Dodecyl-beta-d-maltoside (510 Da, Ligand)
The structure of PSI-11CAC at the stationary growth phase
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 8wmw
Q-score: 0.526
Zhang S, Si L, Su X, Zhao X, An X, Li M
Commun Biol (2024) 7 pp. 560-560 [ Pubmed: 38734819 DOI: doi:10.1038/s42003-024-06268-5 ]
- Photosystem i reaction center subunit viii (3 kDa, Protein from Rhodomonas salina)
- Photosystem i reaction center subunit psak (8 kDa, Protein from Rhodomonas salina)
- Photosystem i reaction center subunit ii (15 kDa, Protein from Rhodomonas salina)
- Phylloquinone (450 Da, Ligand)
- Pigment binding protein complex (Complex from Rhodomonas salina)
- Cac-e (21 kDa, Protein from Rhodomonas salina)
- Cac-k (25 kDa, Protein from Rhodomonas salina)
- Cac-c (23 kDa, Protein from Rhodomonas salina)
- Chlorophyll a (893 Da, Ligand)
- Photosystem i reaction center subunit ix (4 kDa, Protein from Rhodomonas salina)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Chlorophyll c2 (608 Da, Ligand)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Cac-f (22 kDa, Protein from Rhodomonas salina)
- Cac-b (23 kDa, Protein from Rhodomonas salina)
- Photosystem i p700 chlorophyll a apoprotein a1 (83 kDa, Protein from Rhodomonas salina)
- Photosystem i reaction center subunit xii (3 kDa, Protein from Rhodomonas salina)
- Cac-d (22 kDa, Protein from Rhodomonas salina)
- 1,3,3-trimethyl-2-[(1e,3e,5e,7e,9e,11e,13e,15e,17e)-3,7,12,16-tetramethyl-18-[(1r)-2,6,6-trimethylcyclohex-2-en-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenyl]cyclohexene (536 Da, Ligand)
- Photosystem i iron-sulfur center (8 kDa, Protein from Rhodomonas salina)
- Photosystem i p700 chlorophyll a apoprotein a2 (82 kDa, Protein from Rhodomonas salina)
- Water (18 Da, Ligand)
- Cac-g (26 kDa, Protein from Rhodomonas salina)
- Cac-i (23 kDa, Protein from Rhodomonas salina)
- Dodecyl-alpha-d-maltoside (510 Da, Ligand)
- (1~{r})-3,5,5-trimethyl-4-[(3~{e},5~{e},7~{e},9~{e},11~{e},13~{e},15~{e},17~{e})-3,7,12,16-tetramethyl-18-(2,6,6-trimethylcyclohexen-1-yl)octadeca-3,5,7,9,11,13,15,17-octaen-1-ynyl]cyclohex-3-en-1-ol (550 Da, Ligand)
- Cac-a (23 kDa, Protein from Rhodomonas salina)
- Photosystem i reaction center subunit iv (7 kDa, Protein from Rhodomonas salina)
- Iron/sulfur cluster (351 Da, Ligand)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Psar (13 kDa, Protein from Rhodomonas salina)
- Photosystem i reaction center subunit iii (20 kDa, Protein from Rhodomonas salina)
- (1~{r})-3,5,5-trimethyl-4-[(3~{e},5~{e},7~{e},9~{e},11~{e},13~{e},15~{e})-3,7,12,16-tetramethyl-18-[(4~{r})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-3,5,7,9,11,13,15-heptaen-1,17-diynyl]cyclohex-3-en-1-ol (564 Da, Ligand)
- Cac-h (23 kDa, Protein from Rhodomonas salina)
- Psao (15 kDa, Protein from Rhodomonas salina)
- Photosystem i reaction center subunit xi (16 kDa, Protein from Rhodomonas salina)
- Dodecyl-beta-d-maltoside (510 Da, Ligand)
Resolution: 2.87 Å
EM Method: Single-particle
Fitted PDBs: 8htu
Q-score: 0.55
Nat Plants (2023) 9 pp. 1347-1358 [ DOI: doi:10.1038/s41477-023-01463-4 Pubmed: 37474782 ]
- Psi subunit v (23 kDa, Protein from Physcomitrium patens)
- Photosystem i reaction center subunit vi, chloroplastic (14 kDa, Protein from Physcomitrium patens)
- Photosystem i subunit x (13 kDa, Protein from Physcomitrium patens)
- Phylloquinone (450 Da, Ligand)
- (1r,3r)-6-{(3e,5e,7e,9e,11e,13e,15e,17e)-18-[(1s,4r,6r)-4-hydroxy-2,2,6-trimethyl-7-oxabicyclo[4.1.0]hept-1-yl]-3,7,12,16-tetramethyloctadeca-1,3,5,7,9,11,13,15,17-nonaenylidene}-1,5,5-trimethylcyclohexane-1,3-diol (600 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (25 kDa, Protein from Physcomitrium patens)
- Chlorophyll a (893 Da, Ligand)
- Photosystem i from physcomitrium patens (Complex from Physcomitrium patens)
- Chlorophyll b (907 Da, Ligand)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Photosystem i subunit o (15 kDa, Protein from Physcomitrium patens)
- (3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (28 kDa, Protein from Physcomitrium patens)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Beta-carotene (536 Da, Ligand)
- Photosystem i reaction center subunit ii, chloroplastic (22 kDa, Protein from Physcomitrium patens)
- Chlorophyll a-b binding protein, chloroplastic (33 kDa, Protein from Physcomitrium patens)
- Dodecyl-beta-d-maltoside (510 Da, Ligand)
- Photosystem i reaction center subunit v, chloroplastic (16 kDa, Protein from Physcomitrium patens)
- Photosystem i reaction center subunit iv, chloroplastic (13 kDa, Protein from Physcomitrium patens)
- Photosystem i p700 chlorophyll a apoprotein a2 (82 kDa, Protein from Physcomitrium patens)
- Photosystem i reaction center subunit xii (3 kDa, Protein from Physcomitrium patens)
- Chlorophyll a-b binding protein, chloroplastic (34 kDa, Protein from Physcomitrium patens)
- Water (18 Da, Ligand)
- Iron/sulfur cluster (351 Da, Ligand)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (29 kDa, Protein from Physcomitrium patens)
- Photosystem i reaction center subunit ix (4 kDa, Protein from Physcomitrium patens)
- Photosystem i iron-sulfur center (8 kDa, Protein from Physcomitrium patens)
- (3s,5r,6s,3's,5'r,6's)-5,6,5',6'-diepoxy-5,6,5',6'- tetrahydro-beta,beta-carotene-3,3'-diol (600 Da, Ligand)
- Photosystem i p700 chlorophyll a apoprotein a1 (83 kDa, Protein from Physcomitrium patens)
- Photosystem i reaction center subunit iii (26 kDa, Protein from Physcomitrium patens)
- Photosystem i reaction center subunit viii (4 kDa, Protein from Physcomitrium patens)
- Chlorophyll a-b binding protein, chloroplastic (28 kDa, Protein from Physcomitrium patens)
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 7qco
Q-score: 0.326
Semchonok DA, Mondal J, Cooper CJ, Schlum K, Li M, Amin M, Sorzano COS, Ramirez-Aportela E, Kastritis PL, Boekema EJ, Guskov A, Bruce BD
Plant Commun. (2022) 3 pp. 100248-100248 [ DOI: doi:10.1016/j.xplc.2021.100248 Pubmed: 35059628 ]
- Photosystem i reaction center subunit xi (18 kDa, Protein from Chroococcidiopsis sp. TS-821)
- Chlorophyll a (893 Da, Ligand)
- Photosystem i reaction center subunit ii (18 kDa, Protein from Chroococcidiopsis sp. TS-821)
- Photosystem i p700 chlorophyll a apoprotein a1 (83 kDa, Protein from Chroococcidiopsis sp. TS-821)
- Photosystem i reaction center subunit ix (5 kDa, Protein from Chroococcidiopsis sp. TS-821)
- Iron/sulfur cluster (351 Da, Ligand)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Phylloquinone (450 Da, Ligand)
- Photosystem i p700 chlorophyll a apoprotein a2 (82 kDa, Protein from Chroococcidiopsis sp. TS-821)
- Beta-carotene (536 Da, Ligand)
- Photosystem i iron-sulfur center (8 kDa, Protein from Chroococcidiopsis sp. TS-821)
- Photosystem i reaction center subunit psak (9 kDa, Protein from Chroococcidiopsis sp. TS-821)
- Photosystem i reaction center subunit xii (3 kDa, Protein from Chroococcidiopsis sp. TS-821)
- Photosystem i (1 MDa, Complex from Chroococcidiopsis sp. TS-821)
- Photosystem i reaction center subunit iv (13 kDa, Protein from Chroococcidiopsis sp. TS-821)
- Photosystem i reaction center subunit iii (18 kDa, Protein from Chroococcidiopsis sp. TS-821)
- Photosystem i reaction center subunit viii (4 kDa, Protein from Chroococcidiopsis sp. TS-821)
Left PSI in the cyclic electron transport supercomplex NDH-PSI from Arabidopsis
Resolution: 3.25 Å
EM Method: Single-particle
Fitted PDBs: 7wfd
Q-score: 0.526
Su X, Cao D, Pan X, Shi L, Liu Z, Dall'Osto L, Bassi R, Zhang X, Li M
Mol Plant (2022) 15 pp. 454-467 [ DOI: doi:10.1016/j.molp.2022.01.020 Pubmed: 35123031 ]
- Chlorophyll a-b binding protein 4, chloroplastic (27 kDa, Protein from thale cress)
- Phylloquinone (450 Da, Ligand)
- Photosystem i reaction center subunit iv a, chloroplastic (14 kDa, Protein from thale cress)
- Chlorophyll a (893 Da, Ligand)
- Chlorophyll b (907 Da, Ligand)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Photosystem i chlorophyll a/b-binding protein 3-1, chloroplastic (29 kDa, Protein from thale cress)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- (3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
- Beta-carotene (536 Da, Ligand)
- Photosystem i reaction center subunit xi, chloroplastic (23 kDa, Protein from thale cress)
- Photosystem i reaction center subunit ix (5 kDa, Protein from thale cress)
- Cylic electron transfer supercomplex from arabidopsis (Complex from Arabidopsis thaliana)
- Photosystem i reaction center subunit iii, chloroplastic (24 kDa, Protein from thale cress)
- Photosystem i reaction center subunit v, chloroplastic (17 kDa, Protein from thale cress)
- Dodecyl-alpha-d-maltoside (510 Da, Ligand)
- Chlorophyll a-b binding protein 6, chloroplastic (26 kDa, Protein from thale cress)
- Photosystem i reaction center subunit ii-2, chloroplastic (22 kDa, Protein from thale cress)
- Iron/sulfur cluster (351 Da, Ligand)
- Photosystem i chlorophyll a/b-binding protein 6, chloroplastic (29 kDa, Protein from thale cress)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- (3s,5r,6s,3's,5'r,6's)-5,6,5',6'-diepoxy-5,6,5',6'- tetrahydro-beta,beta-carotene-3,3'-diol (600 Da, Ligand)
- Photosystem i reaction center subunit vi-2, chloroplastic (15 kDa, Protein from thale cress)
- Photosystem i reaction center subunit viii (4 kDa, Protein from thale cress)
- Photosystem i iron-sulfur center (9 kDa, Protein from thale cress)
- Photosystem i reaction center subunit psak, chloroplastic (13 kDa, Protein from thale cress)
- Photosystem i p700 chlorophyll a apoprotein a1 (83 kDa, Protein from thale cress)
- Photosystem i p700 chlorophyll a apoprotein a2 (82 kDa, Protein from thale cress)
Right PSI in the cyclic electron transfer supercomplex NDH-PSI from Arabidopsis
Resolution: 3.25 Å
EM Method: Single-particle
Fitted PDBs: 7wfe
Q-score: 0.508
Su X, Cao D, Pan X, Shi L, Liu Z, Dall'Osto L, Bassi R, Zhang X, Li M
Mol Plant (2022) 15 pp. 454-467 [ DOI: doi:10.1016/j.molp.2022.01.020 Pubmed: 35123031 ]
- Psi complex in the ndh-psi supercomplex of arabidopsis (Complex from Arabidopsis thaliana)
- Phylloquinone (450 Da, Ligand)
- Photosystem i reaction center subunit iv a, chloroplastic (14 kDa, Protein from thale cress)
- Photosystem i chlorophyll a/b-binding protein 5, chloroplastic (27 kDa, Protein from thale cress)
- Chlorophyll a (893 Da, Ligand)
- Chlorophyll b (907 Da, Ligand)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Photosystem i chlorophyll a/b-binding protein 3-1, chloroplastic (29 kDa, Protein from thale cress)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- (3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
- Beta-carotene (536 Da, Ligand)
- Photosystem i reaction center subunit xi, chloroplastic (23 kDa, Protein from thale cress)
- Photosystem i reaction center subunit ix (5 kDa, Protein from thale cress)
- Photosystem i reaction center subunit iii, chloroplastic (24 kDa, Protein from thale cress)
- Photosystem i reaction center subunit v, chloroplastic (17 kDa, Protein from thale cress)
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- Dodecyl-alpha-d-maltoside (510 Da, Ligand)
- Chlorophyll a-b binding protein 6, chloroplastic (26 kDa, Protein from thale cress)
- Photosystem i reaction center subunit ii-2, chloroplastic (22 kDa, Protein from thale cress)
- Iron/sulfur cluster (351 Da, Ligand)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- (3s,5r,6s,3's,5'r,6's)-5,6,5',6'-diepoxy-5,6,5',6'- tetrahydro-beta,beta-carotene-3,3'-diol (600 Da, Ligand)
- Photosystem i reaction center subunit vi-2, chloroplastic (15 kDa, Protein from thale cress)
- Photosystem i reaction center subunit viii (4 kDa, Protein from thale cress)
- Photosystem i iron-sulfur center (9 kDa, Protein from thale cress)
- Photosystem i reaction center subunit psak, chloroplastic (13 kDa, Protein from thale cress)
- Photosystem i p700 chlorophyll a apoprotein a1 (83 kDa, Protein from thale cress)
- Photosystem i chlorophyll a/b-binding protein 2, chloroplastic (27 kDa, Protein from thale cress)
- Photosystem i p700 chlorophyll a apoprotein a2 (82 kDa, Protein from thale cress)
Subcomplexes A and E in NDH complex from Arabidopsis
Resolution: 4.33 Å
EM Method: Single-particle
Fitted PDBs: 7wfg
Q-score: 0.232
Su X, Cao D, Pan X, Shi L, Liu Z, Dall'Osto L, Bassi R, Zhang X, Li M
Mol Plant (2022) 15 pp. 454-467 [ DOI: doi:10.1016/j.molp.2022.01.020 Pubmed: 35123031 ]
- Iron/sulfur cluster (351 Da, Ligand)
- Nad(p)h-quinone oxidoreductase subunit j, chloroplastic (18 kDa, Protein from thale cress)
- Nad(p)h-quinone oxidoreductase subunit h, chloroplastic (45 kDa, Protein from thale cress)
- Ndht (10 kDa, Protein from thale cress)
- Nad(p)h-quinone oxidoreductase subunit n, chloroplastic (23 kDa, Protein from thale cress)
- Nad(p)h-quinone oxidoreductase subunit m, chloroplastic (24 kDa, Protein from thale cress)
- Nad(p)h-quinone oxidoreductase subunit i, chloroplastic (20 kDa, Protein from thale cress)
- Subcomplex a and e in ndh complex from arabidopsis (Complex from Arabidopsis thaliana)
- Nad(p)h-quinone oxidoreductase subunit l, chloroplastic (21 kDa, Protein from thale cress)
- Ndho (17 kDa, Protein from thale cress)
- Nad(p)h-quinone oxidoreductase subunit k, chloroplastic (25 kDa, Protein from thale cress)
Cyclic electron transport supercomplex NDH-PSI from Arabidopsis
Resolution: 3.89 Å
EM Method: Single-particle
Fitted PDBs: 7wg5
Q-score: 0.278
Su X, Cao D, Pan X, Shi L, Liu Z, Dall'Osto L, Bassi R, Zhang X, Li M
Mol Plant (2022) 15 pp. 454-467 [ DOI: doi:10.1016/j.molp.2022.01.020 Pubmed: 35123031 ]
- Photosynthetic ndh subunit of subcomplex b 3, chloroplastic (22 kDa, Protein from thale cress)
- Nad(p)h-quinone oxidoreductase subunit 6, chloroplastic (19 kDa, Protein from thale cress)
- Chlorophyll a-b binding protein 4, chloroplastic (27 kDa, Protein from thale cress)
- Phylloquinone (450 Da, Ligand)
- Ndh dependent flow 6 (18 kDa, Protein from thale cress)
- Nad(p)h-quinone oxidoreductase subunit 1, chloroplastic (40 kDa, Protein from thale cress)
- Photosynthetic ndh subunit of lumenal location 4, chloroplastic (23 kDa, Protein from thale cress)
- Nad(p)h-quinone oxidoreductase subunit m, chloroplastic (24 kDa, Protein from thale cress)
- Photosystem i reaction center subunit iv a, chloroplastic (14 kDa, Protein from thale cress)
- Nad(p)h-quinone oxidoreductase subunit i, chloroplastic (20 kDa, Protein from thale cress)
- Nad(p)h-quinone oxidoreductase subunit 5, chloroplastic (85 kDa, Protein from thale cress)
- Nad(p)h-quinone oxidoreductase subunit 2, chloroplastic (57 kDa, Protein from thale cress)
- Nad(p)h-quinone oxidoreductase subunit l, chloroplastic (21 kDa, Protein from thale cress)
- Photosystem i chlorophyll a/b-binding protein 5, chloroplastic (27 kDa, Protein from thale cress)
- Photosynthetic ndh subunit of lumenal location 2, chloroplastic (22 kDa, Protein from thale cress)
- Chlorophyll a (893 Da, Ligand)
- Nad(p)h-quinone oxidoreductase subunit 4l, chloroplastic (11 kDa, Protein from thale cress)
- Chlorophyll b (907 Da, Ligand)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Photosystem i chlorophyll a/b-binding protein 3-1, chloroplastic (29 kDa, Protein from thale cress)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- (3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
- Beta-carotene (536 Da, Ligand)
- Photosynthetic ndh subunit of subcomplex b 2, chloroplastic (38 kDa, Protein from thale cress)
- Photosystem i reaction center subunit xi, chloroplastic (23 kDa, Protein from thale cress)
- Ndho (17 kDa, Protein from thale cress)
- Photosystem i reaction center subunit ix (5 kDa, Protein from thale cress)
- Nad(p)h-quinone oxidoreductase subunit j, chloroplastic (18 kDa, Protein from thale cress)
- Photosynthetic ndh subunit of lumenal location 3, chloroplastic (24 kDa, Protein from thale cress)
- Photosynthetic ndh subunit of subcomplex b 5, chloroplastic (23 kDa, Protein from thale cress)
- Photosystem i reaction center subunit iii, chloroplastic (24 kDa, Protein from thale cress)
- Nad(p)h-quinone oxidoreductase subunit n, chloroplastic (23 kDa, Protein from thale cress)
- Photosystem i reaction center subunit v, chloroplastic (17 kDa, Protein from thale cress)
- Photosynthetic ndh subunit of subcomplex b 1, chloroplastic (51 kDa, Protein from thale cress)
- Isoform 2 of photosynthetic ndh subunit of lumenal location 5, chloroplastic (27 kDa, Protein from thale cress)
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- Nad(p)h-quinone oxidoreductase chain 4, chloroplastic (56 kDa, Protein from thale cress)
- Dodecyl-alpha-d-maltoside (510 Da, Ligand)
- Chlorophyll a-b binding protein 6, chloroplastic (26 kDa, Protein from thale cress)
- Photosystem i reaction center subunit ii-2, chloroplastic (22 kDa, Protein from thale cress)
- Iron/sulfur cluster (351 Da, Ligand)
- Photosystem i chlorophyll a/b-binding protein 6, chloroplastic (29 kDa, Protein from thale cress)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Cyclic electron transfer supercomplex from arabidopsis (Complex from Arabidopsis thaliana)
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- Nad(p)h-quinone oxidoreductase subunit 3, chloroplastic (13 kDa, Protein from thale cress)
- Nad(p)h-quinone oxidoreductase subunit h, chloroplastic (45 kDa, Protein from thale cress)
- (3s,5r,6s,3's,5'r,6's)-5,6,5',6'-diepoxy-5,6,5',6'- tetrahydro-beta,beta-carotene-3,3'-diol (600 Da, Ligand)
- Photosystem i reaction center subunit vi-2, chloroplastic (15 kDa, Protein from thale cress)
- Photosystem i reaction center subunit viii (4 kDa, Protein from thale cress)
- Photosynthetic ndh subunit of lumenal location 1, chloroplastic (26 kDa, Protein from thale cress)
- Photosystem i iron-sulfur center (9 kDa, Protein from thale cress)
- Photosystem i reaction center subunit psak, chloroplastic (13 kDa, Protein from thale cress)
- Photosystem i p700 chlorophyll a apoprotein a1 (83 kDa, Protein from thale cress)
- Ndht (10 kDa, Protein from thale cress)
- Photosystem i chlorophyll a/b-binding protein 2, chloroplastic (27 kDa, Protein from thale cress)
- Photosystem i p700 chlorophyll a apoprotein a2 (82 kDa, Protein from thale cress)
- Nad(p)h-quinone oxidoreductase subunit k, chloroplastic (25 kDa, Protein from thale cress)