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sample_name:"50S ribosomal protein L33 1" AND software_ft:"RELION" AND xref_links:"scop2"

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EMD-0176

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Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycin

Release date: Aug. 29, 2018
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 6ha1
Q-score: 0.48

Crowe-McAuliffe C, Graf M, Huter P, Takada H, Abdelshahid M, Novacek J, Murina V, Atkinson GC, Hauryliuk V, Wilson DN

PNAS (2018) 115 pp. 8978-8983 [ DOI: doi:10.1073/pnas.1808535115 Pubmed: 30126986 ]

Sample:

50s ribosomal protein l13 (16 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l22 (12 kDa, Protein from Bacillus subtilis (strain 168))
Telithromycin (812 Da, Ligand)
50s ribosomal protein l30 (6 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l20 (13 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s15 (10 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s11 (13 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s19 (10 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s7 (17 kDa, Protein from Bacillus subtilis (strain 168))
70s ribosome (Complex from Bacillus subtilis (strain 168))
50s ribosomal protein l5 (20 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l6 (19 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l17 (13 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l28 (6 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l36 (4 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l2 (30 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l19 (13 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s8 (14 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l18 (12 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l14 (13 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s14 (7 kDa, Protein from Bacillus subtilis (strain 168))
Ermd stalling peptide (Complex from Bacillus subtilis (strain 168))
30s ribosomal protein s3 (24 kDa, Protein from Bacillus subtilis (strain 168))
P-trna (28 kDa, RNA from Escherichia coli)
50s ribosomal protein l15 (15 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l3 (22 kDa, Protein from Bacillus subtilis (strain 168))
16s ribosomal rna (503 kDa, RNA from Bacillus subtilis (strain 168))
30s ribosomal protein s10 (11 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s20 (9 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s18 (8 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l23 (10 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l34 (5 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l29 (7 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s16 (10 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s9 (14 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s6 (11 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s4 (22 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s17 (10 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l24 (11 kDa, Protein from Bacillus subtilis (strain 168))
Mrna (872 Da, RNA from Bacillus subtilis (strain 168))
30s ribosomal protein s5 (17 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s12 (15 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l27 (10 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s13 (13 kDa, Protein from Bacillus subtilis (strain 168))
23s ribosomal rna (949 kDa, RNA from Bacillus subtilis (strain 168))
30s ribosomal protein s2 (28 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l31 (7 kDa, Protein from Bacillus subtilis (strain 168))
70s ribosome with p-trna translating the ermd stalling peptide and complexed with telithromycin (Complex)
50s ribosomal protein l33 1 (5 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l16 (16 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l21 (11 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l32 (6 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l35 (7 kDa, Protein from Bacillus subtilis (strain 168))
Trna (Complex from Escherichia coli)
5s ribosomal rna (36 kDa, RNA from Bacillus subtilis (strain 168))
50s ribosomal protein l4 (22 kDa, Protein from Bacillus subtilis (strain 168))

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EMD-0177

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Cryo-EM structure of the ABCF protein VmlR bound to the Bacillus subtilis ribosome

Release date: Aug. 29, 2018
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 6ha8
Q-score: 0.389

Crowe-McAuliffe C, Graf M, Huter P, Takada H, Abdelshahid M, Novacek J, Murina V, Atkinson GC, Hauryliuk V, Wilson DN

PNAS (2018) 115 pp. 8978-8983 [ DOI: doi:10.1073/pnas.1808535115 Pubmed: 30126986 ]

Sample:

50s ribosomal protein l13 (16 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l22 (12 kDa, Protein from Bacillus subtilis (strain 168))
Mrna (872 Da, RNA from Bacillus subtilis subsp. subtilis str. 168)
Telithromycin (812 Da, Ligand)
Adenosine-5'-triphosphate (507 Da, Ligand)
50s ribosomal protein l30 (6 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l31 (7 kDa, Protein from Bacillus subtilis (strain 168))
Nucleotide-binding protein expz (Complex from Bacillus subtilis subsp. subtilis str. 168)
50s ribosomal protein l20 (13 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s15 (10 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s11 (13 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s19 (10 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l1 (25 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s7 (17 kDa, Protein from Bacillus subtilis (strain 168))
Ribosome (Complex from Bacillus subtilis subsp. subtilis str. 168)
50s ribosomal protein l5 (20 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l6 (19 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l17 (13 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l28 (6 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l36 (4 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l2 (30 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l19 (13 kDa, Protein from Bacillus subtilis (strain 168))
16s rrna (503 kDa, RNA from Bacillus subtilis (strain 168))
30s ribosomal protein s8 (14 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l18 (12 kDa, Protein from Bacillus subtilis (strain 168))
P-trna(leu) (24 kDa, RNA from Escherichia coli)
50s ribosomal protein l14 (13 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s14 (7 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s3 (24 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l15 (15 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l3 (22 kDa, Protein from Bacillus subtilis (strain 168))
Nucleotide-binding protein expz (60 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s10 (11 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s20 (9 kDa, Protein from Bacillus subtilis (strain 168))
5s rrna (36 kDa, RNA from Bacillus subtilis (strain 168))
30s ribosomal protein s18 (8 kDa, Protein from Bacillus subtilis (strain 168))
Complex of translating 70s ribosome with abcf antibiotic resistance protein vmlr (Complex)
50s ribosomal protein l23 (10 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l34 (5 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l29 (7 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s16 (10 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s9 (14 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s6 (11 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s4 (22 kDa, Protein from Bacillus subtilis (strain 168))
23s rrna (949 kDa, RNA from Bacillus subtilis (strain 168))
30s ribosomal protein s17 (10 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l24 (11 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s13 (13 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s5 (17 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s12 (15 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l27 (10 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s2 (28 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l33 1 (5 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l16 (16 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l21 (11 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l32 (6 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l35 (7 kDa, Protein from Bacillus subtilis (strain 168))
Trna (Complex from Escherichia coli)
50s ribosomal protein l4 (22 kDa, Protein from Bacillus subtilis (strain 168))

[Show more]

EMD-3750

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Cryo-EM reconstruction of the large subunit of the Mycobacterium smegmatis ribosome

Release date: July 12, 2017
Resolution: 3.18 Å
EM Method: Single-particle
Fitted PDBs: 5o60
Q-score: 0.487

Hentschel J, Burnside C, Mignot I, Leibundgut M, Boehringer D, Ban N

Cell Rep (2017) 20 pp. 149-160 [ Pubmed: 28683309 DOI: doi:10.1016/j.celrep.2017.06.029 ]

Sample:

50s ribosomal protein l21 (11 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
5s rrna (38 kDa, RNA from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l23 (11 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l20 (14 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l34 (5 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l28 (6 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
Trna cca-end acetylated (phe) (894 Da, RNA from Mycobacterium smegmatis str. MC2 155)
Zinc ion (65 Da, Ligand)
Phenylalanine (165 Da, Ligand from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l11 (15 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
23s rrna (1 MDa, RNA from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l25 (22 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l27 (9 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
50s large ribosomal subunit (Complex from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l16 (15 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l29 (8 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l3 (23 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l35 (7 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l31 (8 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l14 (13 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein bl37 (2 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l6 (19 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l9 (15 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l4 (22 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l10 (18 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l30 (7 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l32 (6 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l36 (4 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l15 (15 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l5 (21 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l17 (21 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l33 1 (6 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l24 (11 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l18 (13 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l2 (30 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l22 (16 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l19 (12 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
Magnesium ion (24 Da, Ligand)
50s ribosomal protein l13 (16 kDa, Protein from Mycobacterium smegmatis str. MC2 155)

[Show more]

Sort by: Download

Showing 1 - 3 of 3. Page 1 of 1

Display: Statistics

Download

Select database:

EMDB [3]

Format:

Select the script type:

Shell (Unix-based) Batch (Windows-based)

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Field: