Do data resources managed by EMBL-EBI and our collaborators make a difference to your work? Please take 10 minutes to fill in our annual user survey, and help us make the case for why sustaining open data resources is critical for life sciences research.
Edit your search query here and hit Return to execute it:
sample_name:"30S ribosomal protein S14"
Release date: May 1, 2024
Resolution: 2.44 Å
EM Method: Single-particle
Fitted PDBs: 8p2f
Q-score: 0.597
Resolution: 2.44 Å
EM Method: Single-particle
Fitted PDBs: 8p2f
Q-score: 0.597
Gonzalez-Lopez A, Larsson D, Nelson B, Hergenrother PJ, Selmer M
To Be Published
Sample:
- Water (18 Da, Ligand)
- Trna (24 kDa, RNA from Escherichia coli)
- 30s ribosomal protein s7 (17 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s6 (11 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s12 (15 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l6 (19 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s18 (9 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 1,4-diaminobutane (88 Da, Ligand)
- Potassium ion (39 Da, Ligand)
- 30s ribosomal protein s9 (14 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l21 (11 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l17 (13 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s5 (17 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- Elongation factor g (76 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l16 (16 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- Magnesium ion (24 Da, Ligand)
- 30s ribosomal protein s8 (14 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l31 type b (9 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l4 (22 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s2 (29 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s15 (10 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l35 (7 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 5s ribosomal rna (36 kDa, RNA from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l19 (13 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l5 (20 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s10 (11 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s11 (13 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l15 (15 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l20 (13 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s17 (10 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- Spermidine (145 Da, Ligand)
- 50s ribosomal protein l32 (6 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- Staphylococcus aureus 70s ribosome with elongation factor g and fusidic acid cyclopentane (2 MDa, Complex from Staphylococcus aureus subsp. aureus NCTC 8325)
- 2-[(3~{r},4~{s},5~{s},8~{s},9~{s},10~{s},11~{r},13~{s},14~{s},16~{s})-16-acetyloxy-4,8,10,14-tetramethyl-3,11-bis(oxidanyl)-1,2,3,4,5,6,7,9,11,12,13,15,16,17-tetradecahydrocyclopenta[a]phenanthren-17-yl]-5-cyclopentyl-pentanoic acid (546 Da, Ligand)
- 50s ribosomal protein l3 (23 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l22 (12 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l36 (4 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 23s ribosomal rna (946 kDa, RNA from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s16 (10 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s14 type z (7 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l2 (30 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s3 (24 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l23 (10 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l28 (6 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s20 (9 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- Zinc ion (65 Da, Ligand)
- 50s ribosomal protein l29 (8 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l14 (13 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l25 (23 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s13 (13 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l33 1 (5 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s4 (23 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- Mrna (7 kDa, RNA from Escherichia coli)
- 50s ribosomal protein l34 (5 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l13 (16 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l30 (6 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l27 (10 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s19 (10 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 16s ribosomal rna (503 kDa, RNA from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l24 (11 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- Guanosine-5'-diphosphate (443 Da, Ligand)
- 50s ribosomal protein l18 (13 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
Release date: May 1, 2024
Resolution: 2.02 Å
EM Method: Single-particle
Fitted PDBs: 8p2g
Q-score: 0.68
Resolution: 2.02 Å
EM Method: Single-particle
Fitted PDBs: 8p2g
Q-score: 0.68
Gonzalez-Lopez A, Larsson D, Nelson B, Hergenrother PJ, Selmer M
To Be Published
Sample:
- Water (18 Da, Ligand)
- Trna (24 kDa, RNA from Escherichia coli)
- 30s ribosomal protein s7 (17 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s6 (11 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s12 (15 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l6 (19 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s18 (9 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 1,4-diaminobutane (88 Da, Ligand)
- 30s ribosomal protein s9 (14 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l21 (11 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l17 (13 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s5 (17 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- Elongation factor g (76 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l16 (16 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- Magnesium ion (24 Da, Ligand)
- 30s ribosomal protein s8 (14 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l31 type b (9 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l4 (22 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s2 (29 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s15 (10 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l35 (7 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 5s ribosomal rna (36 kDa, RNA from Staphylococcus aureus subsp. aureus NCTC 8325)
- Large ribosomal subunit protein bl33a (5 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l19 (13 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l5 (20 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s11 (13 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l15 (15 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l20 (13 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s17 (10 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- Spermidine (145 Da, Ligand)
- Large ribosomal subunit protein bl32 (6 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- Staphylococcus aureus 70s ribosome with elongation factor g and fusidic acid cyclopentane (2 MDa, Complex from Staphylococcus aureus subsp. aureus NCTC 8325)
- 2-[(3~{r},4~{s},5~{s},8~{s},9~{s},10~{s},11~{r},13~{s},14~{s},16~{s})-16-acetyloxy-4,8,10,14-tetramethyl-3,11-bis(oxidanyl)-1,2,3,4,5,6,7,9,11,12,13,15,16,17-tetradecahydrocyclopenta[a]phenanthren-17-yl]-5-cyclopentyl-pentanoic acid (546 Da, Ligand)
- 50s ribosomal protein l3 (23 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l22 (12 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l36 (4 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 23s ribosomal rna (946 kDa, RNA from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s16 (10 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- Small ribosomal subunit protein us10 (11 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s14 type z (7 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l2 (30 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s3 (24 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l23 (10 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l28 (6 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s20 (9 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- Zinc ion (65 Da, Ligand)
- 50s ribosomal protein l29 (8 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l14 (13 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l25 (23 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s13 (13 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s4 (23 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- Mrna (7 kDa, RNA from Escherichia coli)
- 50s ribosomal protein l34 (5 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l13 (16 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l30 (6 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l27 (10 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s19 (10 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 16s ribosomal rna (503 kDa, RNA from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l24 (11 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- Guanosine-5'-diphosphate (443 Da, Ligand)
- 50s ribosomal protein l18 (13 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
Release date: May 1, 2024
Resolution: 2.49 Å
EM Method: Single-particle
Fitted PDBs: 8p2h
Q-score: 0.6
Resolution: 2.49 Å
EM Method: Single-particle
Fitted PDBs: 8p2h
Q-score: 0.6
Gonzalez-Lopez A, Larsson D, Nelson B, Hergenrother PJ, Selmer M
To Be Published
Sample:
- Trna (24 kDa, RNA from Escherichia coli)
- 30s ribosomal protein s7 (17 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s6 (11 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s12 (15 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l6 (19 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s18 (9 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 1,4-diaminobutane (88 Da, Ligand)
- 30s ribosomal protein s9 (14 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l21 (11 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l17 (13 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s5 (17 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- Elongation factor g (76 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l16 (16 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- Magnesium ion (24 Da, Ligand)
- 30s ribosomal protein s8 (14 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l31 type b (9 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l4 (22 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s2 (29 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s15 (10 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l35 (7 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 5s ribosomal rna (36 kDa, RNA from Staphylococcus aureus subsp. aureus NCTC 8325)
- Large ribosomal subunit protein bl33a (5 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l19 (13 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l5 (20 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s11 (13 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l15 (15 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l20 (13 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s17 (10 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- Spermidine (145 Da, Ligand)
- Large ribosomal subunit protein bl32 (6 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- Staphylococcus aureus 70s ribosome with elongation factor g and fusidic acid (2 MDa, Complex from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l3 (23 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l22 (12 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l36 (4 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 23s ribosomal rna (946 kDa, RNA from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s16 (10 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- Small ribosomal subunit protein us10 (11 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s14 type z (7 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l2 (30 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s3 (24 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l23 (10 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l28 (6 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s20 (9 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- Zinc ion (65 Da, Ligand)
- 50s ribosomal protein l29 (8 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l14 (13 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l25 (23 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s13 (13 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s4 (23 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- Fusidic acid (516 Da, Ligand)
- Mrna (7 kDa, RNA from Escherichia coli)
- 50s ribosomal protein l34 (5 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l13 (16 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l30 (6 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l27 (10 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s19 (10 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 16s ribosomal rna (503 kDa, RNA from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l24 (11 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- Guanosine-5'-diphosphate (443 Da, Ligand)
- 50s ribosomal protein l18 (13 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
Structural basis of translation inhibition by a valine tRNA-derived fragment
Release date: April 10, 2024
Resolution: 4.62 Å
EM Method: Single-particle
Fitted PDBs: 8wkp
Q-score: 0.242
Resolution: 4.62 Å
EM Method: Single-particle
Fitted PDBs: 8wkp
Q-score: 0.242
Wu Y, Ni MT, Wang YH, Wang C, Hou H, Zhang X, Zhou J
Life Sci Alliance (2024) 7 [ Pubmed: 38599770 DOI: doi:10.26508/lsa.202302488 ]
Sample:
- 30s ribosomal protein s17 (12 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l7ae (13 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s4e (27 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- Unknown (103 Da, Ligand)
- 30s ribosomal protein s27e (6 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s5 (22 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s10 (11 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s7 (21 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s28e (7 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s3 (22 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s13 (17 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s4 (19 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- Rna (25-mer) (8 kDa, RNA from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s14 type z (6 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s19e (17 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- Rna (1328-mer) (486 kDa, RNA from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s9 (15 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s12 (15 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s24e (10 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s6e (11 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s8e (14 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s17e (7 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s27ae (6 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s19 (13 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s15 (17 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s2 (22 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- Small ribosomal subunit protein us8 (14 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s11 (13 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s3ae (21 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- Sulfolobus acidocaldarius ribosome (Complex from Sulfolobus acidocaldarius DSM 639)
Structural basis of translation inhibition by a valine tRNA-derived fragment
Release date: April 10, 2024
Resolution: 4.1 Å
EM Method: Single-particle
Fitted PDBs: 8wq2
Q-score: 0.219
Resolution: 4.1 Å
EM Method: Single-particle
Fitted PDBs: 8wq2
Q-score: 0.219
Wu Y, Ni MT, Wang YH, Wang C, Hou H, Zhang X, Zhou J
Life Sci Alliance (2024) 7 [ Pubmed: 38599770 DOI: doi:10.26508/lsa.202302488 ]
Sample:
- 30s ribosomal protein s17 (12 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l7ae (13 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s4e (27 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- Unknown (103 Da, Ligand)
- 30s ribosomal protein s27e (6 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s5 (22 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s10 (11 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- Rna (26-mer) (8 kDa, RNA from Haloferax volcanii)
- 30s ribosomal protein s7 (21 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s28e (7 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s3 (22 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s13 (17 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s4 (19 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s14 type z (6 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s19e (17 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- Rna (1328-mer) (486 kDa, RNA from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s9 (15 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s12 (15 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s24e (10 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s6e (11 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s8e (14 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s17e (7 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s27ae (6 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s19 (13 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s15 (17 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s2 (22 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- Small ribosomal subunit protein us8 (14 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s11 (13 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s3ae (21 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- Sulfolobus acidocaldarius ribosome (Complex from Sulfolobus acidocaldarius DSM 639)
Structural basis of translation inhibition by a valine tRNA-derived fragment
Release date: April 10, 2024
Resolution: 4.53 Å
EM Method: Single-particle
Fitted PDBs: 8wq4
Q-score: 0.189
Resolution: 4.53 Å
EM Method: Single-particle
Fitted PDBs: 8wq4
Q-score: 0.189
Wu Y, Ni MT, Wang YH, Wang C, Hou H, Zhang X, Zhou J
Life Sci Alliance (2024) 7 [ Pubmed: 38599770 DOI: doi:10.26508/lsa.202302488 ]
Sample:
- 30s ribosomal protein s17 (12 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l7ae (13 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s4e (27 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- Unknown (103 Da, Ligand)
- 30s ribosomal protein s27e (6 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s5 (22 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s10 (11 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- Rna (26-mer) (8 kDa, RNA from Haloferax volcanii)
- 30s ribosomal protein s7 (21 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s28e (7 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s3 (22 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s13 (17 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s4 (19 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s14 type z (6 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s19e (17 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- Rna (1328-mer) (486 kDa, RNA from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s9 (15 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s12 (15 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s24e (10 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s6e (11 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s8e (14 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s17e (7 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s27ae (6 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s19 (13 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s15 (17 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s2 (22 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- Small ribosomal subunit protein us8 (14 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s11 (13 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s3ae (21 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- Sulfolobus acidocaldarius ribosome (Complex from Sulfolobus acidocaldarius DSM 639)
E. coli 70S ribosome complexed with tRNA_Ile2 bearing L34 and t6A37 in classical state
Release date: April 3, 2024
Resolution: 2.32 Å
EM Method: Single-particle
Fitted PDBs: 8hsp
Q-score: 0.649
Resolution: 2.32 Å
EM Method: Single-particle
Fitted PDBs: 8hsp
Q-score: 0.649
Akiyama N, Ishiguro K, Yokoyama T, Miyauchi K, Nagao A, Shirouzu M, Suzuki T
Nat Struct Mol Biol (2024) [ DOI: doi:10.1038/s41594-024-01238-1 Pubmed: 38538915 ]
Sample:
- 50s ribosomal protein l35 (7 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s7 (20 kDa, Protein from Escherichia coli)
- Potassium ion (39 Da, Ligand)
- The complex of e. coli 70s ribosome with mrna and a-, p- site trna (Complex)
- E. coli 70s ribosome (Complex from Escherichia coli)
- 23s rrna (941 kDa, RNA from Escherichia coli)
- 50s ribosomal protein l14 (13 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s9 (14 kDa, Protein from Escherichia coli)
- Magnesium ion (24 Da, Ligand)
- 30s ribosomal protein s3 (26 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l19 (13 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s16 (9 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l18 (12 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s18 (9 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l24 (11 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s2 (26 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s6, fully modified isoform (15 kDa, Protein from Escherichia coli)
- Mrna (Complex)
- 50s ribosomal protein l4 (22 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l17 (14 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s17 (9 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l23 (11 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l25 (10 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l28 (9 kDa, Protein from Escherichia coli)
- Mrna (15 kDa, RNA from Escherichia coli)
- A-, p- site trna (Complex from Escherichia coli BW25113)
- 30s ribosomal protein s13 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l6 (18 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s8 (14 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l5 (20 kDa, Protein from Escherichia coli)
- P-site trna_glu (24 kDa, RNA from Escherichia coli BW25113)
- 30s ribosomal protein s14 (11 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l16 (15 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l21 (11 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l27 (9 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s15 (10 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s21 (8 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l29 (7 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l31 (7 kDa, Protein from Escherichia coli)
- 16s rrna (499 kDa, RNA from Escherichia coli)
- 50s ribosomal protein l30 (6 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l3 (22 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s12 (13 kDa, Protein from Escherichia coli)
- 5s rrna (38 kDa, RNA from Escherichia coli)
- 50s ribosomal protein l32 (6 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l36 (4 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l2 (29 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l13 (16 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l20 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l34 (5 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s19 (10 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s5 (17 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s20 (9 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l15 (15 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l9 (15 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l33 (6 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s11 (13 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s4 (23 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s10 (11 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l22 (12 kDa, Protein from Escherichia coli)
- A-site trna_ile2 (24 kDa, RNA from Escherichia coli BW25113)
E. coli 70S ribosome complexed with H. marismortui tRNA_Ile2 bearing agm2C34 in classical state
Release date: April 3, 2024
Resolution: 2.4 Å
EM Method: Single-particle
Fitted PDBs: 8htz
Q-score: 0.657
Resolution: 2.4 Å
EM Method: Single-particle
Fitted PDBs: 8htz
Q-score: 0.657
Akiyama N, Ishiguro K, Yokoyama T, Miyauchi K, Nagao A, Shirouzu M, Suzuki T
Nat Struct Mol Biol (2024) [ DOI: doi:10.1038/s41594-024-01238-1 Pubmed: 38538915 ]
Sample:
- 50s ribosomal protein l35 (7 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s7 (20 kDa, Protein from Escherichia coli)
- Potassium ion (39 Da, Ligand)
- The complex of e. coli 70s ribosome with mrna and a-, p- site trna (Complex)
- E. coli 70s ribosome (Complex from Escherichia coli)
- 23s rrna (941 kDa, RNA from Escherichia coli)
- 50s ribosomal protein l14 (13 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s9 (14 kDa, Protein from Escherichia coli)
- Magnesium ion (24 Da, Ligand)
- 30s ribosomal protein s3 (26 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l19 (13 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s16 (9 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l18 (12 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s18 (9 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l24 (11 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s2 (26 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s6, fully modified isoform (15 kDa, Protein from Escherichia coli)
- Mrna (Complex)
- 50s ribosomal protein l4 (22 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l17 (14 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s17 (9 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l23 (11 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l25 (10 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l28 (9 kDa, Protein from Escherichia coli)
- Mrna (15 kDa, RNA from Escherichia coli)
- 30s ribosomal protein s13 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l6 (18 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s8 (14 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l5 (20 kDa, Protein from Escherichia coli)
- P-site trna_glu (24 kDa, RNA from Escherichia coli BW25113)
- 30s ribosomal protein s14 (11 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l16 (15 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l21 (11 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l27 (9 kDa, Protein from Escherichia coli)
- A-site trna_ile2 (25 kDa, RNA from Haloarcula marismortui)
- 30s ribosomal protein s15 (10 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s21 (8 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l29 (7 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l31 (7 kDa, Protein from Escherichia coli)
- 16s rrna (499 kDa, RNA from Escherichia coli)
- 50s ribosomal protein l30 (6 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l3 (22 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s12 (13 kDa, Protein from Escherichia coli)
- 5s rrna (38 kDa, RNA from Escherichia coli)
- 50s ribosomal protein l32 (6 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l36 (4 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l2 (29 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l13 (16 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l20 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l34 (5 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s19 (10 kDa, Protein from Escherichia coli)
- P-site trna (Complex from Escherichia coli BW25113)
- 30s ribosomal protein s5 (17 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s20 (9 kDa, Protein from Escherichia coli)
- A-site trna (Complex from Haloarcula marismortui)
- 50s ribosomal protein l15 (15 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l9 (15 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l33 (6 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s11 (13 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s4 (23 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s10 (11 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l22 (12 kDa, Protein from Escherichia coli)
E. coli 70S ribosome complexed with tRNA_Ile2 bearing L34 and ct6A37 in classical state
Release date: April 3, 2024
Resolution: 2.69 Å
EM Method: Single-particle
Fitted PDBs: 8hu1
Q-score: 0.599
Resolution: 2.69 Å
EM Method: Single-particle
Fitted PDBs: 8hu1
Q-score: 0.599
Akiyama N, Ishiguro K, Yokoyama T, Miyauchi K, Nagao A, Shirouzu M, Suzuki T
Nat Struct Mol Biol (2024) [ DOI: doi:10.1038/s41594-024-01238-1 Pubmed: 38538915 ]
Sample:
- 50s ribosomal protein l35 (7 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s7 (20 kDa, Protein from Escherichia coli)
- Potassium ion (39 Da, Ligand)
- The complex of e. coli 70s ribosome with mrna and a-, p- site trna (Complex)
- E. coli 70s ribosome (Complex from Escherichia coli)
- 23s rrna (941 kDa, RNA from Escherichia coli)
- 50s ribosomal protein l14 (13 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s9 (14 kDa, Protein from Escherichia coli)
- Magnesium ion (24 Da, Ligand)
- 30s ribosomal protein s3 (26 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l19 (13 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s16 (9 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l18 (12 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s18 (9 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l24 (11 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s2 (26 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s6, fully modified isoform (15 kDa, Protein from Escherichia coli)
- Mrna (Complex)
- 50s ribosomal protein l4 (22 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l17 (14 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s17 (9 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l23 (11 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l25 (10 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l28 (9 kDa, Protein from Escherichia coli)
- Mrna (15 kDa, RNA from Escherichia coli)
- 30s ribosomal protein s13 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l6 (18 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s8 (14 kDa, Protein from Escherichia coli)
- Trna (Complex from Escherichia coli BW25113)
- 50s ribosomal protein l5 (20 kDa, Protein from Escherichia coli)
- P-site trna_glu (24 kDa, RNA from Escherichia coli BW25113)
- 30s ribosomal protein s14 (11 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l16 (15 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l21 (11 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l27 (9 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s15 (10 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s21 (8 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l29 (7 kDa, Protein from Escherichia coli)
- A-site trna_ile2 (24 kDa, RNA from Escherichia coli BW25113)
- 50s ribosomal protein l31 (7 kDa, Protein from Escherichia coli)
- 16s rrna (499 kDa, RNA from Escherichia coli)
- 50s ribosomal protein l30 (6 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l3 (22 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s12 (13 kDa, Protein from Escherichia coli)
- 5s rrna (38 kDa, RNA from Escherichia coli)
- 50s ribosomal protein l32 (6 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l36 (4 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l2 (29 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l13 (16 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l20 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l34 (5 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s19 (10 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s5 (17 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s20 (9 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l15 (15 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l9 (15 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l33 (6 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s11 (13 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s4 (23 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s10 (11 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l22 (12 kDa, Protein from Escherichia coli)
B. subtilis ApdA-stalled ribosomal complex
Release date: March 20, 2024
Resolution: 2.3 Å
EM Method: Single-particle
Fitted PDBs: 8qcq
Q-score: 0.61
Resolution: 2.3 Å
EM Method: Single-particle
Fitted PDBs: 8qcq
Q-score: 0.61
Morici M, Gabrielli S, Fujiwara K, Paternoga H, Beckert B, Bock LV, Chiba S, Wilson DN
Nat Commun (2024) 15 pp. 2432-2432 [ DOI: doi:10.1038/s41467-024-46761-3 Pubmed: 38503735 ]
Sample:
- 30s ribosomal protein s11 (13 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- Water (18 Da, Ligand)
- 50s ribosomal protein l33 1 (5 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- 50s ribosomal protein l13 (16 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- 30s ribosomal protein s13 (13 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- 50s ribosomal protein l29 (7 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- Large ribosomal subunit protein bl27 (10 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- 16s rrna (503 kDa, RNA from Bacillus subtilis subsp. subtilis str. 168)
- 30s ribosomal protein s19 (10 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- Potassium ion (39 Da, Ligand)
- 50s ribosomal protein l16 (16 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- 50s ribosomal protein l3 (22 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- 30s ribosomal protein s6 (11 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- Large ribosomal subunit protein bl31-a (7 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- Magnesium ion (24 Da, Ligand)
- 30s ribosomal protein s10 (11 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- Apda nascent chain (970 Da, Protein from Amycolatopsis japonica)
- B. subtilis apda-stalled ribosomal complex (Complex from Amycolatopsis japonica)
- 23s rrna (948 kDa, RNA from Bacillus subtilis subsp. subtilis str. 168)
- 30s ribosomal protein s18 (8 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- Mrna (1 kDa, RNA from Amycolatopsis japonica)
- 50s ribosomal protein l34 (5 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- 30s ribosomal protein s14 (7 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- 50s ribosomal protein l35 (7 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- 50s ribosomal protein l28 (6 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- 50s ribosomal protein l17 (13 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- 30s ribosomal protein s5 (17 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- 50s ribosomal protein l18 (12 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- 50s ribosomal protein l36 (4 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- 50s ribosomal protein l2 (30 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- Small ribosomal subunit protein us7 (17 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- 50s ribosomal protein l14 (13 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- Small ribosomal subunit protein us3 (23 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- Pro-trna (24 kDa, RNA from Bacillus subtilis subsp. subtilis str. 168)
- 50s ribosomal protein l32 (6 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- Zinc ion (65 Da, Ligand)
- 5s rrna (38 kDa, RNA from Bacillus subtilis subsp. subtilis str. 168)
- 50s ribosomal protein l5 (20 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- Large ribosomal subunit protein bl20 (13 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- Large ribosomal subunit protein ul30 (6 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- 30s ribosomal protein s8 (14 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- Large ribosomal subunit protein ul6 (19 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- 50s ribosomal protein l19 (13 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- 30s ribosomal protein s9 (14 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- 50s ribosomal protein l4 (22 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- 30s ribosomal protein s15 (10 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- 30s ribosomal protein s20 (9 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- 30s ribosomal protein s12 (15 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- 50s ribosomal protein l22 (12 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- 30s ribosomal protein s17 (10 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- 50s ribosomal protein l21 (11 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- Proline (115 Da, Ligand)
- Large ribosomal subunit protein ul23 (10 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- 50s ribosomal protein l24 (11 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- 50s ribosomal protein l15 (15 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)