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was set up in 1974 as Europe’s flagship laboratory for the life sciences – an intergovernmental organisation with more than 80 independent research groups covering the spectrum of molecular biology:

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Barcelona

Tissue biology and disease modelling

Grenoble

Structural biology

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Structural biology

Heidelberg

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Hinxton

EMBL-EBI: European Bioinformatics Institute

Rome

Epigenetics and neurobiology

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sample_name:"23S Ribosomal RNA" AND author_orcid:"0000-0002-3299-894x"

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EMD-24738

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A. baumannii Ribosome-TP-6076 complex: P-site tRNA 70S

Release date: Feb. 2, 2022
Resolution: 2.65 Å
EM Method: Single-particle
Fitted PDBs: 7ryf
Q-score: 0.541

Morgan CE, Zhang Z, Bonomo RA, Yu EW

Mbio (2022) 13 pp. e0373221-e0373221 [ Pubmed: 35100868 DOI: doi:10.1128/mbio.03732-21 ]

Sample:

50s ribosomal protein l33 (6 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l19 (13 kDa, Protein from Acinetobacter baumannii (strain AB0057))
30s ribosomal protein s2 (27 kDa, Protein from Acinetobacter baumannii AB0057)
30s ribosomal protein s8 (14 kDa, Protein from Acinetobacter baumannii (strain AB0057))
A. baumannii 70s ribosome in complex with p-site trna and tp-6076 (Complex from Acinetobacter baumannii AB0057)
50s ribosomal protein l23 (11 kDa, Protein from Acinetobacter baumannii (strain AB0057))
(4s,4as,5ar,12as)-4-(diethylamino)-3,10,12,12a-tetrahydroxy-1,11-dioxo-8-[(2s)-pyrrolidin-2-yl]-7-(trifluoromethyl)-1,4,4a,5,5a,6,11,12a-octahydrotetracene-2-carboxamide (579 Da, Ligand)
50s ribosomal protein l22 (11 kDa, Protein from Acinetobacter baumannii AB0057)
50s ribosomal protein l17 (14 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l21 (11 kDa, Protein from Acinetobacter baumannii (strain AB0057))
30s ribosomal protein s7 (17 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l14 (13 kDa, Protein from Acinetobacter baumannii AB0057)
30s ribosomal protein s14 (11 kDa, Protein from Acinetobacter baumannii (strain AB0057))
30s ribosomal protein s15 (10 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l5 (20 kDa, Protein from Acinetobacter baumannii (strain AB0057))
23s ribosomal rna (945 kDa, RNA from Acinetobacter baumannii AB0057)
50s ribosomal protein l28 (9 kDa, Protein from Acinetobacter baumannii AB0057)
50s ribosomal protein l29 (7 kDa, Protein from Acinetobacter baumannii (strain AB0057))
30s ribosomal protein s11 (13 kDa, Protein from Acinetobacter baumannii AB0057)
30s ribosomal protein s16 (11 kDa, Protein from Acinetobacter baumannii AB0057)
50s ribosomal protein l20 (13 kDa, Protein from Acinetobacter baumannii AB0057)
50s ribosomal protein l36 (4 kDa, Protein from Acinetobacter baumannii (strain AB0057))
30s ribosomal protein s9 (14 kDa, Protein from Acinetobacter baumannii AB0057)
50s ribosomal protein l16 (15 kDa, Protein from Acinetobacter baumannii (strain AB0057))
30s ribosomal protein s19 (10 kDa, Protein from Acinetobacter baumannii (strain AB0057))
30s ribosomal protein s13 (13 kDa, Protein from Acinetobacter baumannii (strain AB0057))
30s ribosomal protein s4 (23 kDa, Protein from Acinetobacter baumannii (strain AB0057))
Zinc ion (65 Da, Ligand)
5s ribosomal rna (36 kDa, RNA from Acinetobacter baumannii AB0057)
50s ribosomal protein l27 (9 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l25 (10 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l15 (15 kDa, Protein from Acinetobacter baumannii (strain AB0057))
30s ribosomal protein s21 (8 kDa, Protein from Acinetobacter baumannii AB0057)
50s ribosomal protein l35 (7 kDa, Protein from Acinetobacter baumannii (strain AB0057))
30s ribosomal protein s12 (13 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l18 (12 kDa, Protein from Acinetobacter baumannii (strain AB0057))
30s ribosomal protein s10 (11 kDa, Protein from Acinetobacter baumannii AB0057)
30s ribosomal protein s3 (27 kDa, Protein from Acinetobacter baumannii AB0057)
30s ribosomal protein s18 (9 kDa, Protein from Acinetobacter baumannii AB0057)
Mrna (935 Da, RNA from Acinetobacter baumannii AB0057)
50s ribosomal protein l6 (19 kDa, Protein from Acinetobacter baumannii (strain AB0057))
Magnesium ion (24 Da, Ligand)
30s ribosomal protein s6 (14 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l2 (30 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l34 (5 kDa, Protein from Acinetobacter baumannii AB0057)
50s ribosomal protein l3 (22 kDa, Protein from Acinetobacter baumannii (strain AB0057))
30s ribosomal protein s5 (17 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l4 (21 kDa, Protein from Acinetobacter baumannii (strain AB0057))
30s ribosomal protein s20 (9 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l30 (6 kDa, Protein from Acinetobacter baumannii AB0057)
50s ribosomal protein l24 (11 kDa, Protein from Acinetobacter baumannii (strain AB0057))
Trna-met (24 kDa, RNA from Acinetobacter baumannii AB0057)
50s ribosomal protein l32 (7 kDa, Protein from Acinetobacter baumannii (strain AB0057))
30s ribosomal protein s17 (9 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l9 (15 kDa, Protein from Acinetobacter baumannii (strain AB0057))
16s ribosomal rna (500 kDa, RNA from Acinetobacter baumannii AB0057)
50s ribosomal protein l13 (15 kDa, Protein from Acinetobacter baumannii (strain AB0057))

[Show more]

EMD-24739

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A. baumannii Ribosome-TP-6076 complex: E-site tRNA 70S

Release date: Feb. 2, 2022
Resolution: 2.38 Å
EM Method: Single-particle
Fitted PDBs: 7ryg
Q-score: 0.596

Morgan CE, Zhang Z, Bonomo RA, Yu EW

Mbio (2022) 13 pp. e0373221-e0373221 [ Pubmed: 35100868 DOI: doi:10.1128/mbio.03732-21 ]

Sample:

50s ribosomal protein l33 (6 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l19 (13 kDa, Protein from Acinetobacter baumannii (strain AB0057))
30s ribosomal protein s2 (27 kDa, Protein from Acinetobacter baumannii AB0057)
30s ribosomal protein s8 (14 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l23 (11 kDa, Protein from Acinetobacter baumannii (strain AB0057))
(4s,4as,5ar,12as)-4-(diethylamino)-3,10,12,12a-tetrahydroxy-1,11-dioxo-8-[(2s)-pyrrolidin-2-yl]-7-(trifluoromethyl)-1,4,4a,5,5a,6,11,12a-octahydrotetracene-2-carboxamide (579 Da, Ligand)
50s ribosomal protein l22 (11 kDa, Protein from Acinetobacter baumannii AB0057)
50s ribosomal protein l17 (14 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l21 (11 kDa, Protein from Acinetobacter baumannii (strain AB0057))
30s ribosomal protein s7 (17 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l14 (13 kDa, Protein from Acinetobacter baumannii AB0057)
30s ribosomal protein s14 (11 kDa, Protein from Acinetobacter baumannii (strain AB0057))
30s ribosomal protein s15 (10 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l5 (20 kDa, Protein from Acinetobacter baumannii (strain AB0057))
23s ribosomal rna (945 kDa, RNA from Acinetobacter baumannii AB0057)
50s ribosomal protein l28 (9 kDa, Protein from Acinetobacter baumannii AB0057)
50s ribosomal protein l29 (7 kDa, Protein from Acinetobacter baumannii (strain AB0057))
30s ribosomal protein s11 (13 kDa, Protein from Acinetobacter baumannii AB0057)
30s ribosomal protein s16 (11 kDa, Protein from Acinetobacter baumannii AB0057)
50s ribosomal protein l20 (13 kDa, Protein from Acinetobacter baumannii AB0057)
50s ribosomal protein l36 (4 kDa, Protein from Acinetobacter baumannii (strain AB0057))
30s ribosomal protein s9 (14 kDa, Protein from Acinetobacter baumannii AB0057)
50s ribosomal protein l16 (15 kDa, Protein from Acinetobacter baumannii (strain AB0057))
30s ribosomal protein s19 (10 kDa, Protein from Acinetobacter baumannii (strain AB0057))
30s ribosomal protein s13 (13 kDa, Protein from Acinetobacter baumannii (strain AB0057))
30s ribosomal protein s4 (23 kDa, Protein from Acinetobacter baumannii (strain AB0057))
Zinc ion (65 Da, Ligand)
A. baumannii 70s ribosome in complex with e-site trna and tp-6076 (Complex from Acinetobacter baumannii AB0057)
5s ribosomal rna (36 kDa, RNA from Acinetobacter baumannii AB0057)
50s ribosomal protein l27 (9 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l25 (10 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l15 (15 kDa, Protein from Acinetobacter baumannii (strain AB0057))
30s ribosomal protein s21 (8 kDa, Protein from Acinetobacter baumannii AB0057)
50s ribosomal protein l35 (7 kDa, Protein from Acinetobacter baumannii (strain AB0057))
30s ribosomal protein s12 (13 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l18 (12 kDa, Protein from Acinetobacter baumannii (strain AB0057))
30s ribosomal protein s10 (11 kDa, Protein from Acinetobacter baumannii AB0057)
30s ribosomal protein s3 (27 kDa, Protein from Acinetobacter baumannii AB0057)
30s ribosomal protein s18 (9 kDa, Protein from Acinetobacter baumannii AB0057)
Mrna (935 Da, RNA from Acinetobacter baumannii AB0057)
50s ribosomal protein l6 (19 kDa, Protein from Acinetobacter baumannii (strain AB0057))
Magnesium ion (24 Da, Ligand)
30s ribosomal protein s6 (14 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l2 (30 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l34 (5 kDa, Protein from Acinetobacter baumannii AB0057)
50s ribosomal protein l3 (22 kDa, Protein from Acinetobacter baumannii (strain AB0057))
30s ribosomal protein s5 (17 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l4 (21 kDa, Protein from Acinetobacter baumannii (strain AB0057))
30s ribosomal protein s20 (9 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l30 (6 kDa, Protein from Acinetobacter baumannii AB0057)
50s ribosomal protein l24 (11 kDa, Protein from Acinetobacter baumannii (strain AB0057))
Trna-met (24 kDa, RNA from Acinetobacter baumannii AB0057)
50s ribosomal protein l32 (7 kDa, Protein from Acinetobacter baumannii (strain AB0057))
30s ribosomal protein s17 (9 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l9 (15 kDa, Protein from Acinetobacter baumannii (strain AB0057))
16s ribosomal rna (500 kDa, RNA from Acinetobacter baumannii AB0057)
50s ribosomal protein l13 (15 kDa, Protein from Acinetobacter baumannii (strain AB0057))

[Show more]

EMD-24740

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A. baumannii Ribosome-TP-6076 complex: Empty 70S

Release date: Feb. 2, 2022
Resolution: 2.43 Å
EM Method: Single-particle
Fitted PDBs: 7ryh
Q-score: 0.587

Morgan CE, Zhang Z, Bonomo RA, Yu EW

Mbio (2022) 13 pp. e0373221-e0373221 [ Pubmed: 35100868 DOI: doi:10.1128/mbio.03732-21 ]

Sample:

50s ribosomal protein l33 (6 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l19 (13 kDa, Protein from Acinetobacter baumannii (strain AB0057))
30s ribosomal protein s2 (27 kDa, Protein from Acinetobacter baumannii AB0057)
30s ribosomal protein s8 (14 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l23 (11 kDa, Protein from Acinetobacter baumannii (strain AB0057))
(4s,4as,5ar,12as)-4-(diethylamino)-3,10,12,12a-tetrahydroxy-1,11-dioxo-8-[(2s)-pyrrolidin-2-yl]-7-(trifluoromethyl)-1,4,4a,5,5a,6,11,12a-octahydrotetracene-2-carboxamide (579 Da, Ligand)
50s ribosomal protein l22 (11 kDa, Protein from Acinetobacter baumannii AB0057)
50s ribosomal protein l17 (14 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l21 (11 kDa, Protein from Acinetobacter baumannii (strain AB0057))
30s ribosomal protein s7 (17 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l14 (13 kDa, Protein from Acinetobacter baumannii AB0057)
30s ribosomal protein s14 (11 kDa, Protein from Acinetobacter baumannii (strain AB0057))
30s ribosomal protein s15 (10 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l5 (20 kDa, Protein from Acinetobacter baumannii (strain AB0057))
23s ribosomal rna (945 kDa, RNA from Acinetobacter baumannii AB0057)
50s ribosomal protein l28 (9 kDa, Protein from Acinetobacter baumannii AB0057)
50s ribosomal protein l29 (7 kDa, Protein from Acinetobacter baumannii (strain AB0057))
30s ribosomal protein s11 (13 kDa, Protein from Acinetobacter baumannii AB0057)
30s ribosomal protein s16 (11 kDa, Protein from Acinetobacter baumannii AB0057)
50s ribosomal protein l20 (13 kDa, Protein from Acinetobacter baumannii AB0057)
50s ribosomal protein l36 (4 kDa, Protein from Acinetobacter baumannii (strain AB0057))
30s ribosomal protein s9 (14 kDa, Protein from Acinetobacter baumannii AB0057)
50s ribosomal protein l16 (15 kDa, Protein from Acinetobacter baumannii (strain AB0057))
30s ribosomal protein s19 (10 kDa, Protein from Acinetobacter baumannii (strain AB0057))
30s ribosomal protein s13 (13 kDa, Protein from Acinetobacter baumannii (strain AB0057))
30s ribosomal protein s4 (23 kDa, Protein from Acinetobacter baumannii (strain AB0057))
Zinc ion (65 Da, Ligand)
5s ribosomal rna (36 kDa, RNA from Acinetobacter baumannii AB0057)
50s ribosomal protein l27 (9 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l25 (10 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l15 (15 kDa, Protein from Acinetobacter baumannii (strain AB0057))
A. baumannii 70s ribosome in complex with tp-6076 (Complex from Acinetobacter baumannii AB0057)
30s ribosomal protein s21 (8 kDa, Protein from Acinetobacter baumannii AB0057)
50s ribosomal protein l35 (7 kDa, Protein from Acinetobacter baumannii (strain AB0057))
30s ribosomal protein s12 (13 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l18 (12 kDa, Protein from Acinetobacter baumannii (strain AB0057))
30s ribosomal protein s10 (11 kDa, Protein from Acinetobacter baumannii AB0057)
30s ribosomal protein s3 (27 kDa, Protein from Acinetobacter baumannii AB0057)
30s ribosomal protein s18 (9 kDa, Protein from Acinetobacter baumannii AB0057)
50s ribosomal protein l6 (19 kDa, Protein from Acinetobacter baumannii (strain AB0057))
Magnesium ion (24 Da, Ligand)
30s ribosomal protein s6 (14 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l2 (30 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l34 (5 kDa, Protein from Acinetobacter baumannii AB0057)
50s ribosomal protein l3 (22 kDa, Protein from Acinetobacter baumannii (strain AB0057))
30s ribosomal protein s5 (17 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l4 (21 kDa, Protein from Acinetobacter baumannii (strain AB0057))
30s ribosomal protein s20 (9 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l30 (6 kDa, Protein from Acinetobacter baumannii AB0057)
50s ribosomal protein l24 (11 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l32 (7 kDa, Protein from Acinetobacter baumannii (strain AB0057))
30s ribosomal protein s17 (9 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l9 (15 kDa, Protein from Acinetobacter baumannii (strain AB0057))
16s ribosomal rna (500 kDa, RNA from Acinetobacter baumannii AB0057)
50s ribosomal protein l13 (15 kDa, Protein from Acinetobacter baumannii (strain AB0057))

[Show more]

EMD-23667

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A. baumannii Ribosome-Eravacycline complex: 50S

Release date: May 19, 2021
Resolution: 2.54 Å
EM Method: Single-particle
Fitted PDBs: 7m4v
Q-score: 0.632

Zhang Z, Morgan CE, Bonomo RA, Yu EW

Mbio (2021) 12 pp. e0103121-e0103121 [ Pubmed: 34044590 DOI: doi:10.1128/mBio.01031-21 ]

Sample:

50s ribosomal protein l19 (13 kDa, Protein from Acinetobacter baumannii (strain AB0057))
Eravacycline (558 Da, Ligand)
50s ribosomal protein l23 (11 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l22 (11 kDa, Protein from Acinetobacter baumannii AB0057)
50s ribosomal protein l17 (14 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l21 (11 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l14 (13 kDa, Protein from Acinetobacter baumannii AB0057)
50s ribosomal protein l36 (4 kDa, Protein from Acinetobacter baumannii AB0057)
50s ribosomal protein l5 (20 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l28 (9 kDa, Protein from Acinetobacter baumannii AB0057)
50s ribosomal protein l29 (7 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l20 (13 kDa, Protein from Acinetobacter baumannii AB0057)
50s ribosomal protein l16 (15 kDa, Protein from Acinetobacter baumannii (strain AB0057))
Zinc ion (65 Da, Ligand)
23s ribosomal rna (945 kDa, RNA from Acinetobacter baumannii AB0057)
50s ribosomal protein l27 (9 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l25 (10 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l15 (15 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l35 (7 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l18 (12 kDa, Protein from Acinetobacter baumannii (strain AB0057))
Water (18 Da, Ligand)
50s ribosomal protein l33 (6 kDa, Protein from Acinetobacter baumannii AB0057)
50s ribosomal protein l6 (19 kDa, Protein from Acinetobacter baumannii (strain AB0057))
Magnesium ion (24 Da, Ligand)
5s ribosomal rna (36 kDa, RNA from Acinetobacter baumannii AB0057)
Acinetobacter baumannii 50s-eravacycline complex (Complex from Acinetobacter baumannii AB0057)
50s ribosomal protein l2 (30 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l34 (5 kDa, Protein from Acinetobacter baumannii AB0057)
50s ribosomal protein l13 (15 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l3 (22 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l4 (21 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l30 (6 kDa, Protein from Acinetobacter baumannii AB0057)
50s ribosomal protein l24 (11 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l32 (7 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l9 (15 kDa, Protein from Acinetobacter baumannii (strain AB0057))

[Show more]

EMD-23668

Download Map 3D View

A. baumannii Ribosome-Eravacycline complex: Empty 70S

Release date: May 19, 2021
Resolution: 2.55 Å
EM Method: Single-particle
Fitted PDBs: 7m4w
Q-score: 0.612

Zhang Z, Morgan CE, Bonomo RA, Yu EW

Mbio (2021) 12 pp. e0103121-e0103121 [ Pubmed: 34044590 DOI: doi:10.1128/mBio.01031-21 ]

Sample:

50s ribosomal protein l33 (6 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l19 (13 kDa, Protein from Acinetobacter baumannii (strain AB0057))
30s ribosomal protein s8 (14 kDa, Protein from Acinetobacter baumannii (strain AB0057))
Eravacycline (558 Da, Ligand)
50s ribosomal protein l23 (11 kDa, Protein from Acinetobacter baumannii (strain AB0057))
23s ribosomal rna (945 kDa, RNA from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l17 (14 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l21 (11 kDa, Protein from Acinetobacter baumannii (strain AB0057))
30s ribosomal protein s7 (17 kDa, Protein from Acinetobacter baumannii (strain AB0057))
30s ribosomal protein s14 (11 kDa, Protein from Acinetobacter baumannii (strain AB0057))
30s ribosomal protein s15 (10 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l5 (20 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l29 (7 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l36 (4 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l16 (15 kDa, Protein from Acinetobacter baumannii (strain AB0057))
30s ribosomal protein s19 (10 kDa, Protein from Acinetobacter baumannii (strain AB0057))
30s ribosomal protein s13 (13 kDa, Protein from Acinetobacter baumannii (strain AB0057))
30s ribosomal protein s11 (13 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l20 (13 kDa, Protein from Acinetobacter baumannii (strain AB0057))
A baumannii 70s ribosome with no trna in complex with eravacycline (Complex from Acinetobacter baumannii (strain AB0057))
30s ribosomal protein s4 (23 kDa, Protein from Acinetobacter baumannii (strain AB0057))
Zinc ion (65 Da, Ligand)
50s ribosomal protein l27 (9 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l25 (10 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l15 (15 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l34 (5 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l30 (6 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l35 (7 kDa, Protein from Acinetobacter baumannii (strain AB0057))
30s ribosomal protein s12 (13 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l18 (12 kDa, Protein from Acinetobacter baumannii (strain AB0057))
30s ribosomal protein s21 (8 kDa, Protein from Acinetobacter baumannii (strain AB0057))
Water (18 Da, Ligand)
50s ribosomal protein l22 (11 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l6 (19 kDa, Protein from Acinetobacter baumannii (strain AB0057))
Magnesium ion (24 Da, Ligand)
30s ribosomal protein s6 (14 kDa, Protein from Acinetobacter baumannii (strain AB0057))
30s ribosomal protein s9 (14 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l14 (13 kDa, Protein from Acinetobacter baumannii (strain AB0057))
5s ribosomal rna (36 kDa, RNA from Acinetobacter baumannii (strain AB0057))
30s ribosomal protein s2 (27 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l2 (30 kDa, Protein from Acinetobacter baumannii (strain AB0057))
30s ribosomal protein s3 (27 kDa, Protein from Acinetobacter baumannii (strain AB0057))
30s ribosomal protein s18 (9 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l13 (15 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l3 (22 kDa, Protein from Acinetobacter baumannii (strain AB0057))
30s ribosomal protein s5 (17 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l4 (21 kDa, Protein from Acinetobacter baumannii (strain AB0057))
16s ribosomal rna (500 kDa, RNA from Acinetobacter baumannii (strain AB0057))
30s ribosomal protein s16 (11 kDa, Protein from Acinetobacter baumannii (strain AB0057))
30s ribosomal protein s20 (9 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l24 (11 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l28 (9 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l32 (7 kDa, Protein from Acinetobacter baumannii (strain AB0057))
30s ribosomal protein s17 (9 kDa, Protein from Acinetobacter baumannii (strain AB0057))
30s ribosomal protein s10 (11 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l9 (15 kDa, Protein from Acinetobacter baumannii (strain AB0057))

[Show more]

EMD-23669

Download Map 3D View

A. baumannii Ribosome-Eravacycline complex: P-site tRNA 70S

Release date: May 19, 2021
Resolution: 2.66 Å
EM Method: Single-particle
Fitted PDBs: 7m4x
Q-score: 0.591

Zhang Z, Morgan CE, Bonomo RA, Yu EW

Mbio (2021) 12 pp. e0103121-e0103121 [ Pubmed: 34044590 DOI: doi:10.1128/mBio.01031-21 ]

Sample:

50s ribosomal protein l33 (6 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l19 (13 kDa, Protein from Acinetobacter baumannii (strain AB0057))
30s ribosomal protein s8 (14 kDa, Protein from Acinetobacter baumannii (strain AB0057))
Eravacycline (558 Da, Ligand)
50s ribosomal protein l23 (11 kDa, Protein from Acinetobacter baumannii (strain AB0057))
Trna-met (24 kDa, RNA from Acinetobacter baumannii (strain AB0057))
A baumannii 70s ribosome with p-site trna in complex with eravacycline (Complex from Acinetobacter baumannii (strain AB0057))
23s ribosomal rna (945 kDa, RNA from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l17 (14 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l21 (11 kDa, Protein from Acinetobacter baumannii (strain AB0057))
30s ribosomal protein s7 (17 kDa, Protein from Acinetobacter baumannii (strain AB0057))
30s ribosomal protein s14 (11 kDa, Protein from Acinetobacter baumannii (strain AB0057))
30s ribosomal protein s15 (10 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l5 (20 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l29 (7 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l36 (4 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l16 (15 kDa, Protein from Acinetobacter baumannii (strain AB0057))
30s ribosomal protein s19 (10 kDa, Protein from Acinetobacter baumannii (strain AB0057))
30s ribosomal protein s13 (13 kDa, Protein from Acinetobacter baumannii (strain AB0057))
30s ribosomal protein s11 (13 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l20 (13 kDa, Protein from Acinetobacter baumannii (strain AB0057))
30s ribosomal protein s4 (23 kDa, Protein from Acinetobacter baumannii (strain AB0057))
Zinc ion (65 Da, Ligand)
50s ribosomal protein l27 (9 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l25 (10 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l15 (15 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l34 (5 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l30 (6 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l35 (7 kDa, Protein from Acinetobacter baumannii (strain AB0057))
30s ribosomal protein s12 (13 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l18 (12 kDa, Protein from Acinetobacter baumannii (strain AB0057))
30s ribosomal protein s21 (8 kDa, Protein from Acinetobacter baumannii (strain AB0057))
Water (18 Da, Ligand)
50s ribosomal protein l22 (11 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l6 (19 kDa, Protein from Acinetobacter baumannii (strain AB0057))
Magnesium ion (24 Da, Ligand)
30s ribosomal protein s6 (14 kDa, Protein from Acinetobacter baumannii (strain AB0057))
30s ribosomal protein s9 (14 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l14 (13 kDa, Protein from Acinetobacter baumannii (strain AB0057))
5s ribosomal rna (36 kDa, RNA from Acinetobacter baumannii (strain AB0057))
30s ribosomal protein s2 (27 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l2 (30 kDa, Protein from Acinetobacter baumannii (strain AB0057))
30s ribosomal protein s3 (27 kDa, Protein from Acinetobacter baumannii (strain AB0057))
30s ribosomal protein s18 (9 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l3 (22 kDa, Protein from Acinetobacter baumannii (strain AB0057))
30s ribosomal protein s5 (17 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l4 (21 kDa, Protein from Acinetobacter baumannii (strain AB0057))
16s ribosomal rna (500 kDa, RNA from Acinetobacter baumannii (strain AB0057))
30s ribosomal protein s16 (11 kDa, Protein from Acinetobacter baumannii (strain AB0057))
30s ribosomal protein s20 (9 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l24 (11 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l28 (9 kDa, Protein from Acinetobacter baumannii (strain AB0057))
Mrna (935 Da, RNA from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l32 (7 kDa, Protein from Acinetobacter baumannii (strain AB0057))
30s ribosomal protein s17 (9 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l9 (15 kDa, Protein from Acinetobacter baumannii (strain AB0057))
30s ribosomal protein s10 (11 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l13 (15 kDa, Protein from Acinetobacter baumannii (strain AB0057))

[Show more]

EMD-23670

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A. baumannii Ribosome-Eravacycline complex: E-site tRNA 70S

Release date: May 19, 2021
Resolution: 2.5 Å
EM Method: Single-particle
Fitted PDBs: 7m4y
Q-score: 0.626

Zhang Z, Morgan CE, Bonomo RA, Yu EW

Mbio (2021) 12 pp. e0103121-e0103121 [ Pubmed: 34044590 DOI: doi:10.1128/mBio.01031-21 ]

Sample:

30s ribosomal protein s2 (27 kDa, Protein from Acinetobacter baumannii AB0057)
Eravacycline (558 Da, Ligand)
50s ribosomal protein l29 (7 kDa, Protein from Acinetobacter baumannii AB0057)
16s ribosomal rna (500 kDa, RNA from Acinetobacter baumannii AB0057)
50s ribosomal protein l22 (11 kDa, Protein from Acinetobacter baumannii AB0057)
30s ribosomal protein s14 (11 kDa, Protein from Acinetobacter baumannii AB0057)
30s ribosomal protein s15 (10 kDa, Protein from Acinetobacter baumannii AB0057)
30s ribosomal protein s17 (9 kDa, Protein from Acinetobacter baumannii AB0057)
50s ribosomal protein l14 (13 kDa, Protein from Acinetobacter baumannii AB0057)
50s ribosomal protein l36 (4 kDa, Protein from Acinetobacter baumannii AB0057)
50s ribosomal protein l24 (11 kDa, Protein from Acinetobacter baumannii AB0057)
30s ribosomal protein s8 (14 kDa, Protein from Acinetobacter baumannii AB0057)
A baumannii 70s ribosome with e-site trna in complex with eravacycline (Complex from Acinetobacter baumannii AB0057)
50s ribosomal protein l28 (9 kDa, Protein from Acinetobacter baumannii AB0057)
30s ribosomal protein s11 (13 kDa, Protein from Acinetobacter baumannii AB0057)
30s ribosomal protein s12 (13 kDa, Protein from Acinetobacter baumannii AB0057)
30s ribosomal protein s16 (11 kDa, Protein from Acinetobacter baumannii AB0057)
30s ribosomal protein s19 (10 kDa, Protein from Acinetobacter baumannii AB0057)
50s ribosomal protein l16 (15 kDa, Protein from Acinetobacter baumannii AB0057)
30s ribosomal protein s9 (14 kDa, Protein from Acinetobacter baumannii AB0057)
50s ribosomal protein l4 (21 kDa, Protein from Acinetobacter baumannii AB0057)
50s ribosomal protein l13 (15 kDa, Protein from Acinetobacter baumannii AB0057)
50s ribosomal protein l15 (15 kDa, Protein from Acinetobacter baumannii AB0057)
50s ribosomal protein l32 (7 kDa, Protein from Acinetobacter baumannii AB0057)
Zinc ion (65 Da, Ligand)
23s ribosomal rna (945 kDa, RNA from Acinetobacter baumannii AB0057)
50s ribosomal protein l35 (7 kDa, Protein from Acinetobacter baumannii AB0057)
30s ribosomal protein s7 (17 kDa, Protein from Acinetobacter baumannii AB0057)
50s ribosomal protein l2 (30 kDa, Protein from Acinetobacter baumannii AB0057)
50s ribosomal protein l27 (9 kDa, Protein from Acinetobacter baumannii AB0057)
50s ribosomal protein l3 (22 kDa, Protein from Acinetobacter baumannii AB0057)
50s ribosomal protein l21 (11 kDa, Protein from Acinetobacter baumannii AB0057)
30s ribosomal protein s20 (9 kDa, Protein from Acinetobacter baumannii AB0057)
30s ribosomal protein s21 (8 kDa, Protein from Acinetobacter baumannii AB0057)
Water (18 Da, Ligand)
30s ribosomal protein s10 (11 kDa, Protein from Acinetobacter baumannii AB0057)
30s ribosomal protein s3 (27 kDa, Protein from Acinetobacter baumannii AB0057)
30s ribosomal protein s18 (9 kDa, Protein from Acinetobacter baumannii AB0057)
Mrna (935 Da, RNA from Acinetobacter baumannii AB0057)
50s ribosomal protein l33 (6 kDa, Protein from Acinetobacter baumannii AB0057)
Magnesium ion (24 Da, Ligand)
30s ribosomal protein s13 (13 kDa, Protein from Acinetobacter baumannii AB0057)
5s ribosomal rna (36 kDa, RNA from Acinetobacter baumannii AB0057)
50s ribosomal protein l19 (13 kDa, Protein from Acinetobacter baumannii AB0057)
30s ribosomal protein s6 (14 kDa, Protein from Acinetobacter baumannii AB0057)
50s ribosomal protein l17 (14 kDa, Protein from Acinetobacter baumannii AB0057)
50s ribosomal protein l25 (10 kDa, Protein from Acinetobacter baumannii AB0057)
50s ribosomal protein l34 (5 kDa, Protein from Acinetobacter baumannii AB0057)
50s ribosomal protein l9 (15 kDa, Protein from Acinetobacter baumannii AB0057)
30s ribosomal protein s5 (17 kDa, Protein from Acinetobacter baumannii AB0057)
50s ribosomal protein l30 (6 kDa, Protein from Acinetobacter baumannii AB0057)
50s ribosomal protein l18 (12 kDa, Protein from Acinetobacter baumannii AB0057)
50s ribosomal protein l23 (11 kDa, Protein from Acinetobacter baumannii AB0057)
50s ribosomal protein l6 (19 kDa, Protein from Acinetobacter baumannii AB0057)
Trna-met (24 kDa, RNA from Acinetobacter baumannii AB0057)
50s ribosomal protein l5 (20 kDa, Protein from Acinetobacter baumannii AB0057)
30s ribosomal protein s4 (23 kDa, Protein from Acinetobacter baumannii AB0057)
50s ribosomal protein l20 (13 kDa, Protein from Acinetobacter baumannii AB0057)

[Show more]

EMD-23671

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A. baumannii Ribosome-Eravacycline complex: hpf-bound 70S

Release date: May 19, 2021
Resolution: 2.92 Å
EM Method: Single-particle
Fitted PDBs: 7m4z
Q-score: 0.53

Zhang Z, Morgan CE, Bonomo RA, Yu EW

Mbio (2021) 12 pp. e0103121-e0103121 [ Pubmed: 34044590 DOI: doi:10.1128/mBio.01031-21 ]

Sample:

30s ribosomal protein s2 (27 kDa, Protein from Acinetobacter baumannii AB0057)
Eravacycline (558 Da, Ligand)
50s ribosomal protein l29 (7 kDa, Protein from Acinetobacter baumannii AB0057)
16s ribosomal rna (500 kDa, RNA from Acinetobacter baumannii AB0057)
50s ribosomal protein l22 (11 kDa, Protein from Acinetobacter baumannii AB0057)
30s ribosomal protein s14 (11 kDa, Protein from Acinetobacter baumannii AB0057)
30s ribosomal protein s15 (10 kDa, Protein from Acinetobacter baumannii AB0057)
30s ribosomal protein s17 (9 kDa, Protein from Acinetobacter baumannii AB0057)
Ribosomal subunit interface protein (13 kDa, Protein from Acinetobacter baumannii AB0057)
50s ribosomal protein l14 (13 kDa, Protein from Acinetobacter baumannii AB0057)
50s ribosomal protein l36 (4 kDa, Protein from Acinetobacter baumannii AB0057)
50s ribosomal protein l24 (11 kDa, Protein from Acinetobacter baumannii AB0057)
30s ribosomal protein s8 (14 kDa, Protein from Acinetobacter baumannii AB0057)
50s ribosomal protein l28 (9 kDa, Protein from Acinetobacter baumannii AB0057)
30s ribosomal protein s11 (13 kDa, Protein from Acinetobacter baumannii AB0057)
30s ribosomal protein s12 (13 kDa, Protein from Acinetobacter baumannii AB0057)
30s ribosomal protein s16 (11 kDa, Protein from Acinetobacter baumannii AB0057)
30s ribosomal protein s19 (10 kDa, Protein from Acinetobacter baumannii AB0057)
50s ribosomal protein l16 (15 kDa, Protein from Acinetobacter baumannii AB0057)
30s ribosomal protein s9 (14 kDa, Protein from Acinetobacter baumannii AB0057)
50s ribosomal protein l4 (21 kDa, Protein from Acinetobacter baumannii AB0057)
50s ribosomal protein l13 (15 kDa, Protein from Acinetobacter baumannii AB0057)
50s ribosomal protein l15 (15 kDa, Protein from Acinetobacter baumannii AB0057)
50s ribosomal protein l32 (7 kDa, Protein from Acinetobacter baumannii AB0057)
Zinc ion (65 Da, Ligand)
23s ribosomal rna (945 kDa, RNA from Acinetobacter baumannii AB0057)
50s ribosomal protein l35 (7 kDa, Protein from Acinetobacter baumannii AB0057)
30s ribosomal protein s4 (23 kDa, Protein from Acinetobacter baumannii AB0057)
50s ribosomal protein l2 (30 kDa, Protein from Acinetobacter baumannii AB0057)
30s ribosomal protein s7 (17 kDa, Protein from Acinetobacter baumannii AB0057)
50s ribosomal protein l27 (9 kDa, Protein from Acinetobacter baumannii AB0057)
50s ribosomal protein l3 (22 kDa, Protein from Acinetobacter baumannii AB0057)
50s ribosomal protein l21 (11 kDa, Protein from Acinetobacter baumannii AB0057)
30s ribosomal protein s20 (9 kDa, Protein from Acinetobacter baumannii AB0057)
30s ribosomal protein s21 (8 kDa, Protein from Acinetobacter baumannii AB0057)
Water (18 Da, Ligand)
30s ribosomal protein s10 (11 kDa, Protein from Acinetobacter baumannii AB0057)
30s ribosomal protein s3 (27 kDa, Protein from Acinetobacter baumannii AB0057)
30s ribosomal protein s18 (9 kDa, Protein from Acinetobacter baumannii AB0057)
50s ribosomal protein l33 (6 kDa, Protein from Acinetobacter baumannii AB0057)
Magnesium ion (24 Da, Ligand)
30s ribosomal protein s13 (13 kDa, Protein from Acinetobacter baumannii AB0057)
5s ribosomal rna (36 kDa, RNA from Acinetobacter baumannii AB0057)
50s ribosomal protein l19 (13 kDa, Protein from Acinetobacter baumannii AB0057)
30s ribosomal protein s6 (14 kDa, Protein from Acinetobacter baumannii AB0057)
50s ribosomal protein l17 (14 kDa, Protein from Acinetobacter baumannii AB0057)
50s ribosomal protein l25 (10 kDa, Protein from Acinetobacter baumannii AB0057)
50s ribosomal protein l34 (5 kDa, Protein from Acinetobacter baumannii AB0057)
50s ribosomal protein l9 (15 kDa, Protein from Acinetobacter baumannii AB0057)
30s ribosomal protein s5 (17 kDa, Protein from Acinetobacter baumannii AB0057)
50s ribosomal protein l30 (6 kDa, Protein from Acinetobacter baumannii AB0057)
50s ribosomal protein l18 (12 kDa, Protein from Acinetobacter baumannii AB0057)
50s ribosomal protein l23 (11 kDa, Protein from Acinetobacter baumannii AB0057)
50s ribosomal protein l6 (19 kDa, Protein from Acinetobacter baumannii AB0057)
50s ribosomal protein l5 (20 kDa, Protein from Acinetobacter baumannii AB0057)
A baumannii 70s ribosome with hpf in complex with eravacycline (Complex from Acinetobacter baumannii AB0057)
50s ribosomal protein l20 (13 kDa, Protein from Acinetobacter baumannii AB0057)

[Show more]

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