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EMBL

was set up in 1974 as Europe’s flagship laboratory for the life sciences – an intergovernmental organisation with more than 80 independent research groups covering the spectrum of molecular biology:

Research:

perform basic research in molecular biology

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offer vital services to scientists in the member states

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scientists, students and visitors at all levels

Transfer

and development of technology

Develop

new instruments and methods

Integrating

life science research in Europe

More about EMBL

Six sites

represent EMBL in Europe.

Barcelona

Tissue biology and disease modelling

Grenoble

Structural biology

Hamburg

Structural biology

Heidelberg

Main laboratory

Hinxton

EMBL-EBI: European Bioinformatics Institute

Rome

Epigenetics and neurobiology

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sample_name:"23S Ribosomal RNA" AND author_orcid:"0000-0002-3229-474x"

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EMD-10284

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Pseudomonas aeruginosa 70s ribosome from an aminoglycoside resistant clinical isolate

Release date: Oct. 23, 2019
Resolution: 2.89 Å
EM Method: Single-particle
Fitted PDBs: 6spf
Q-score: 0.461

Halfon Y, Jimenez-Fernandez A, La Rosa R, Espinosa Portero R, Krogh Johansen H, Matzov D, Eyal Z, Bashan A, Zimmerman E, Belousoff M, Molin S, Yonath A

PNAS (2019) 116 pp. 22275-22281 [ Pubmed: 31611393 DOI: doi:10.1073/pnas.1909831116 ]

Sample:

50s ribosomal protein l13 (15 kDa, Protein from Pseudomonas aeruginosa)
30s ribosomal protein s2 (25 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l15 (15 kDa, Protein from Pseudomonas aeruginosa)
30s ribosomal protein s7 (17 kDa, Protein from Pseudomonas aeruginosa)
30s ribosomal protein s5 (15 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l35 (7 kDa, Protein from Pseudomonas aeruginosa)
30s ribosomal protein s10 (10 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l24 (11 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l9 (8 kDa, Protein from Pseudomonas aeruginosa)
5s rrna (37 kDa, RNA from Pseudomonas aeruginosa)
30s ribosomal protein s16 (8 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l5 (19 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l18 (12 kDa, Protein from Pseudomonas aeruginosa)
30s ribosomal protein s13 (12 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l22 (11 kDa, Protein from Pseudomonas aeruginosa)
30s ribosomal protein s11 (12 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l2 (29 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l30 (6 kDa, Protein from Pseudomonas aeruginosa)
30s ribosomal protein s3 (23 kDa, Protein from Pseudomonas aeruginosa)
30s ribosomal protein s9 (14 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l17 (13 kDa, Protein from Pseudomonas aeruginosa)
30s ribosomal protein s19 (9 kDa, Protein from Pseudomonas aeruginosa)
16s rrna (493 kDa, RNA from Pseudomonas aeruginosa)
50s ribosomal protein l23 (10 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l20 (13 kDa, Protein from Pseudomonas aeruginosa)
30s ribosomal protein s15 (9 kDa, Protein from Pseudomonas aeruginosa)
30s ribosomal protein s12 (13 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l36 (4 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l33 (5 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l25 (20 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l11 (14 kDa, Protein from Pseudomonas aeruginosa)
Ribosomal protein ul29 (6 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l16 (15 kDa, Protein from Pseudomonas aeruginosa)
30s ribosomal protein s6 (11 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l14 (13 kDa, Protein from Pseudomonas aeruginosa)
30s ribosomal protein s4 (23 kDa, Protein from Pseudomonas aeruginosa)
30s ribosomal protein s21 (4 kDa, Protein from Pseudomonas aeruginosa)
Pseudomonas aeruginosa 70s ribosome from a clinical isolate (Complex from Pseudomonas aeruginos)
Pseudomonas aeruginosa strain pao1 23s ribosomal rna (935 kDa, RNA from Pseudomonas aeruginosa)
30s ribosomal protein s17 (8 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l32 (6 kDa, Protein from Pseudomonas aeruginosa)
30s ribosomal protein s20 (9 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l31 (3 kDa, Protein from Pseudomonas aeruginosa)
30s ribosomal protein s18 (6 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l27 (8 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l34 (5 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l19 (12 kDa, Protein from Pseudomonas aeruginosa)
30s ribosomal protein s8 (14 kDa, Protein from Pseudomonas aeruginosa)
30s ribosomal protein s14 (11 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l28 (8 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l21 (11 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l4 (21 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l3 (22 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l6 (18 kDa, Protein from Pseudomonas aeruginosa)

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EMD-10280

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Pseudomonas aeruginosa 50s ribosome from a clinical isolate with a mutation in uL6

Release date: Oct. 16, 2019
Resolution: 2.82 Å
EM Method: Single-particle
Fitted PDBs: 6spb
Q-score: 0.573

Halfon Y, Jimenez-Fernandez A, La Rosa R, Espinosa Portero R, Krogh Johansen H, Matzov D, Eyal Z, Bashan A, Zimmerman E, Belousoff M, Molin S, Yonath A

PNAS (2019) 116 pp. 22275-22281 [ Pubmed: 31611393 DOI: doi:10.1073/pnas.1909831116 ]

Sample:

50s ribosomal protein l13 (15 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l15 (15 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l35 (7 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l24 (11 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l9 (8 kDa, Protein from Pseudomonas aeruginosa)
5s rrna (37 kDa, RNA from Pseudomonas aeruginosa)
50s ribosomal protein l18 (12 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l5 (19 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l22 (11 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l2 (29 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l30 (6 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l17 (13 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l19 (12 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l29 (6 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l20 (13 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l36 (4 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l33 (5 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l23 (10 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l25 (20 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l11 (14 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l16 (15 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l14 (13 kDa, Protein from Pseudomonas aeruginosa)
Pseudomonas aeruginosa 70s ribosome from a clinical isolate (Complex from Pseudomonas aeruginos)
23s ribosomal rna (935 kDa, RNA from Pseudomonas aeruginosa)
50s ribosomal protein l32 (6 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l31 (3 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l27 (8 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l34 (5 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l28 (8 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l21 (11 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l4 (21 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l3 (22 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l6 (18 kDa, Protein from Pseudomonas aeruginosa)

[Show more]

EMD-10282

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Pseudomonas aeruginosa 50s ribosome from a clinical isolate

Release date: Oct. 16, 2019
Resolution: 3.28 Å
EM Method: Single-particle
Fitted PDBs: 6spd
Q-score: 0.249

Halfon Y, Jimenez-Fernandez A, La Rosa R, Espinosa Portero R, Krogh Johansen H, Matzov D, Eyal Z, Bashan A, Zimmerman E, Belousoff M, Molin S, Yonath A

PNAS (2019) 116 pp. 22275-22281 [ Pubmed: 31611393 DOI: doi:10.1073/pnas.1909831116 ]

Sample:

50s ribosomal protein l13 (15 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l22 (11 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l35 (7 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l24 (11 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l18 (12 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l2 (29 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l30 (6 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l21 (11 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l6 (18 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l15 (15 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l23 (10 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l20 (13 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l17 (13 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l16 (15 kDa, Protein from Pseudomonas aeruginosa)
5s ribosomal rna (37 kDa, RNA from Pseudomonas aeruginosa)
50s ribosomal protein l33 (5 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l25 (20 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l11 (14 kDa, Protein from Pseudomonas aeruginosa)
Ribosomal protein ul29 (6 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l5 (19 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l14 (13 kDa, Protein from Pseudomonas aeruginosa)
Pseudomonas aeruginosa 70s ribosome from a clinical isolate (Complex from Pseudomonas aeruginos)
50s ribosomal protein l32 (6 kDa, Protein from Pseudomonas aeruginosa)
23s ribosomal rna (935 kDa, RNA from Pseudomonas aeruginosa)
50s ribosomal protein l19 (12 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l31 (3 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l9 (15 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l27 (8 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l34 (5 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l28 (8 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l4 (21 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l3 (22 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l36 (4 kDa, Protein from Pseudomonas aeruginosa)

[Show more]

EMD-10285

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Pseudomonas aeruginosa 70s ribosome from a clinical isolate

Release date: Oct. 16, 2019
Resolution: 3.34 Å
EM Method: Single-particle
Fitted PDBs: 6spg
Q-score: 0.468

Halfon Y, Jimenez-Fernandez A, La Rosa R, Espinosa Portero R, Krogh Johansen H, Matzov D, Eyal Z, Bashan A, Zimmerman E, Belousoff M, Molin S, Yonath A

PNAS (2019) 116 pp. 22275-22281 [ Pubmed: 31611393 DOI: doi:10.1073/pnas.1909831116 ]

Sample:

50s ribosomal protein l13 (15 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l22 (11 kDa, Protein from Pseudomonas aeruginosa)
30s ribosomal protein s7 (17 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l35 (7 kDa, Protein from Pseudomonas aeruginosa)
30s ribosomal protein s10 (10 kDa, Protein from Pseudomonas aeruginosa)
30s ribosomal protein s20 (9 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l9 (8 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l24 (11 kDa, Protein from Pseudomonas aeruginosa)
30s ribosomal protein s16 (8 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l5 (19 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l18 (12 kDa, Protein from Pseudomonas aeruginosa)
30s ribosomal protein s13 (12 kDa, Protein from Pseudomonas aeruginosa)
30s ribosomal protein s11 (12 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l2 (29 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l30 (6 kDa, Protein from Pseudomonas aeruginosa)
30s ribosomal protein s6 (12 kDa, Protein from Pseudomonas aeruginosa)
30s ribosomal protein s9 (14 kDa, Protein from Pseudomonas aeruginosa)
16s ribosomal rna (494 kDa, RNA from Pseudomonas aeruginosa)
5s ribosomal rna (37 kDa, RNA from Pseudomonas aeruginosa)
30s ribosomal protein s19 (9 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l6 (18 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l15 (15 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l23 (10 kDa, Protein from Pseudomonas aeruginosa)
30s ribosomal protein s5 (16 kDa, Protein from Pseudomonas aeruginosa)
30s ribosomal protein s21 (7 kDa, Protein from Pseudomonas aeruginosa)
30s ribosomal protein s3 (23 kDa, Protein from Pseudomonas aeruginosa)
30s ribosomal protein s18 (8 kDa, Protein from Pseudomonas aeruginosa)
30s ribosomal protein s2 (26 kDa, Protein from Pseudomonas aeruginosa)
30s ribosomal protein s4 (23 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l20 (13 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l17 (13 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l16 (15 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l21 (11 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l33 (5 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l25 (20 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l11 (14 kDa, Protein from Pseudomonas aeruginosa)
Ribosomal protein ul29 (6 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l14 (13 kDa, Protein from Pseudomonas aeruginosa)
Pseudomonas aeruginosa 70s ribosome from a clinical isolate (Complex from Pseudomonas aeruginos)
30s ribosomal protein s17 (8 kDa, Protein from Pseudomonas aeruginosa)
23s ribosomal rna (935 kDa, RNA from Pseudomonas aeruginosa)
Magnesium ion (24 Da, Ligand)
50s ribosomal protein l32 (6 kDa, Protein from Pseudomonas aeruginosa)
30s ribosomal protein s8 (14 kDa, Protein from Pseudomonas aeruginosa)
30s ribosomal protein s15 (9 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l19 (12 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l31 (3 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l27 (8 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l34 (5 kDa, Protein from Pseudomonas aeruginosa)
30s ribosomal protein s14 (11 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l28 (8 kDa, Protein from Pseudomonas aeruginosa)
30s ribosomal protein s12 (13 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l4 (21 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l3 (22 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l36 (4 kDa, Protein from Pseudomonas aeruginosa)

[Show more]

EMD-8369

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Methicillin Resistant, Linezolid resistant Staphylococcus aureus 70S ribosome (delta S145 uL3)

Release date: May 31, 2017
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 5t7v
Q-score: 0.462

Belousoff MJ, Eyal Z, Radjainia M, Ahmed T, Bamert RS, Matzov D, Bashan A, Zimmerman E, Mishra S, Cameron D, Elmlund H, Peleg AY, Bhushan S, Lithgow T, Yonath A

mBio (2017) 8 [ DOI: doi:10.1128/mBio.00395-17 Pubmed: 28487427 ]

Sample:

30s ribosomal protein s11 (12 kDa, Protein from Staphylococcus aureus)
50s ribosomal protein l28 (6 kDa, Protein from Staphylococcus aureus)
50s ribosomal protein l17 (13 kDa, Protein from Staphylococcus aureus)
50s ribosomal protein l34 (5 kDa, Protein from Staphylococcus aureus)
30s ribosomal protein s16 (8 kDa, Protein from Staphylococcus aureus)
50s ribosomal protein l13 (16 kDa, Protein from Staphylococcus aureus)
50s ribosomal protein l23 (10 kDa, Protein from Staphylococcus aureus)
5s ribosomal rna (36 kDa, RNA from Staphylococcus aureus)
30s ribosomal protein s17 (9 kDa, Protein from Staphylococcus aureus)
30s ribosomal protein s20 (8 kDa, Protein from Staphylococcus aureus)
50s ribosomal protein l30 (6 kDa, Protein from Staphylococcus aureus)
50s ribosomal protein l27 (8 kDa, Protein from Staphylococcus aureus)
50s ribosomal protein l18 (12 kDa, Protein from Staphylococcus aureus)
50s ribosomal protein l25 (10 kDa, Protein from Staphylococcus aureus)
E-site trna (23 kDa, RNA from Staphylococcus aureus)
23s ribosomal rna (945 kDa, RNA from Staphylococcus aureus)
30s ribosomal protein s12 (15 kDa, Protein from Staphylococcus aureus)
50s ribosomal protein l36 (4 kDa, Protein from Staphylococcus aureus)
50s ribosomal protein l24 (11 kDa, Protein from Staphylococcus aureus)
30s ribosomal protein s18 (6 kDa, Protein from Staphylococcus aureus)
50s ribosomal protein l32 (6 kDa, Protein from Staphylococcus aureus)
30s ribosomal protein s10 (9 kDa, Protein from Staphylococcus aureus)
50s ribosomal protein l3 (23 kDa, Protein from Staphylococcus aureus)
50s ribosomal protein l35 (7 kDa, Protein from Staphylococcus aureus)
50s ribosomal protein l16 (15 kDa, Protein from Staphylococcus aureus)
50s ribosomal protein l2 (29 kDa, Protein from Staphylococcus aureus)
16s ribosomal rna (500 kDa, RNA from Staphylococcus aureus)
50s ribosomal protein l33 (5 kDa, Protein from Staphylococcus aureus)
50s ribosomal protein l21 (11 kDa, Protein from Staphylococcus aureus)
Magnesium ion (24 Da, Ligand)
50s ribosomal protein l6 (19 kDa, Protein from Staphylococcus aureus)
50s ribosomal protein l22 (12 kDa, Protein from Staphylococcus aureus)
30s ribosomal protein s15 (10 kDa, Protein from Staphylococcus aureus)
30s ribosomal protein s8 (14 kDa, Protein from Staphylococcus aureus)
50s ribosomal protein l20 (13 kDa, Protein from Staphylococcus aureus)
50s ribosomal protein l14 (13 kDa, Protein from Staphylococcus aureus)
50s ribosomal protein l29 (7 kDa, Protein from Staphylococcus aureus)
50s ribosomal protein l4 (22 kDa, Protein from Staphylococcus aureus)
30s ribosomal protein s5 (16 kDa, Protein from Staphylococcus aureus)
50s ribosomal protein l19 (13 kDa, Protein from Staphylococcus aureus)
30s ribosomal protein s4 (22 kDa, Protein from Staphylococcus aureus)
30s ribosomal protein s6 (10 kDa, Protein from Staphylococcus aureus)
50s ribosomal protein l15 (15 kDa, Protein from Staphylococcus aureus)
Clinical isolate linezolid resistant mrsa 70s ribosome (Complex from Staphylococcus aureus)

[Show more]

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Showing 1 - 5 of 5. Page 1 of 1

Display: Statistics

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Select database:

EMDB [5]

Format:

Select the script type:

Shell (Unix-based) Batch (Windows-based)

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