Do data resources managed by EMBL-EBI and our collaborators make a difference to your work? Please take 10 minutes to fill in our annual user survey, and help us make the case for why sustaining open data resources is critical for life sciences research.
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 8ti1
Q-score: 0.419
Driggers CM, Kuo YY, Zhu P, ElSheikh A, Shyng SL
Nat Commun (2024) 15 pp. 2502-2502 [ Pubmed: 38509107 DOI: doi:10.1038/s41467-024-46751-5 ]
- Sur1 (177 kDa, Protein from Mesocricetus auratus)
- [(2r)-1-octadecanoyloxy-3-[oxidanyl-[(1r,2r,3s,4r,5r,6s)-2,3,6-tris(oxidanyl)-4,5-diphosphonooxy-cyclohexyl]oxy-phospho ryl]oxy-propan-2-yl] (8z)-icosa-5,8,11,14-tetraenoate (1 kDa, Ligand)
- Kir6.2-q52r/sur1 open channel (880 kDa, Complex from Rattus norvegicus)
- Di-palmitoyl-3-sn-phosphatidylethanolamine (691 Da, Ligand)
- Water (18 Da, Ligand)
- O-[(r)-{[(2r)-2,3-bis(octadecanoyloxy)propyl]oxy}(hydroxy)phosphoryl]-l-serine (792 Da, Ligand)
- Potassium ion (39 Da, Ligand)
- Atp-sensitive inward rectifier potassium channel 11 (43 kDa, Protein from Rattus norvegicus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Resolution: 3.28 Å
EM Method: Single-particle
Fitted PDBs: 8ti2
Q-score: 0.394
Driggers CM, Kuo YY, Zhu P, ElSheikh A, Shyng SL
Nat Commun (2024) 15 pp. 2502-2502 [ Pubmed: 38509107 DOI: doi:10.1038/s41467-024-46751-5 ]
- Sur1 (177 kDa, Protein from Mesocricetus auratus)
- [(2r)-1-octadecanoyloxy-3-[oxidanyl-[(1r,2r,3s,4r,5r,6s)-2,3,6-tris(oxidanyl)-4,5-diphosphonooxy-cyclohexyl]oxy-phospho ryl]oxy-propan-2-yl] (8z)-icosa-5,8,11,14-tetraenoate (1 kDa, Ligand)
- Kir6.2-q52r/sur1 open channel (880 kDa, Complex from Rattus norvegicus)
- Di-palmitoyl-3-sn-phosphatidylethanolamine (691 Da, Ligand)
- Water (18 Da, Ligand)
- O-[(r)-{[(2r)-2,3-bis(octadecanoyloxy)propyl]oxy}(hydroxy)phosphoryl]-l-serine (792 Da, Ligand)
- Potassium ion (39 Da, Ligand)
- Atp-sensitive inward rectifier potassium channel 11 (43 kDa, Protein from Rattus norvegicus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Kir6.2-Q52R/SUR1 apo closed channel
Driggers CM, Kuo YY, Zhu P, ElSheikh A, Shyng SL
Nat Commun (2024) 15 pp. 2502-2502 [ Pubmed: 38509107 DOI: doi:10.1038/s41467-024-46751-5 ]
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 7yrg
Q-score: 0.227
Huang L, Wang Y, Long H, Zhu H, Wen Z, Zhang L, Zhang W, Guo Z, Wang L, Tang F, Hu J, Bao K, Zhu P, Li G, Zhou Z
Mol Cell (2023) 83 pp. 2884-2895.e7 [ DOI: doi:10.1016/j.molcel.2023.07.001 Pubmed: 37536340 ]
- Histone h3.2 (12 kDa, Protein from Xenopus laevis)
- Histone h2a.z (12 kDa, Protein from Homo sapiens)
- Histone h4 (11 kDa, Protein from Xenopus laevis)
- S-adenosylmethionine (398 Da, Ligand)
- Histone (Complex from Homo sapiens)
- Histone h2b 1.1 (10 kDa, Protein from Xenopus laevis)
- [histone h4]-n-methyl-l-lysine20 n-methyltransferase kmt5b (32 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- Histone methyltransferase and nucleosome complex (Complex)
- Dna (146-mer) (45 kDa, DNA from Homo sapiens)
- Histone,suv420h1 (Complex from Xenopus laevis)
Clostridium thermocellum RNA polymerase transcription open complex with SigI1 and its promoter
Resolution: 3.03 Å
EM Method: Single-particle
Fitted PDBs: 8i23
Q-score: 0.48
Li J, Zhang H, Li D, Liu YJ, Bayer EA, Cui Q, Feng Y, Zhu P
Nat Commun (2023) 14 pp. 6455-6455 [ Pubmed: 37833284 DOI: doi:10.1038/s41467-023-41796-4 ]
- Rna polymerase sigma factor sigi1 (30 kDa, Protein from Acetivibrio thermocellus DSM1313)
- Zinc ion (65 Da, Ligand)
- Dna-directed rna polymerase subunit omega (8 kDa, Protein from Acetivibrio thermocellus DSM1313)
- Magnesium ion (24 Da, Ligand)
- Dna-directed rna polymerase subunit alpha (35 kDa, Protein from Acetivibrio thermocellus DSM 1313)
- Clostridium thermocellum rna polymerase transcription open complex with sigi1 its promoter (Complex from Acetivibrio thermocellus DSM 1313)
- Dna (80-mer) (24 kDa, DNA from Acetivibrio thermocellus)
- Dna (80-mer) (24 kDa, DNA from Acetivibrio thermocellus)
- Dna-directed rna polymerase subunit beta' (132 kDa, Protein from Acetivibrio thermocellus DSM 1313)
- Dna-directed rna polymerase subunit beta (140 kDa, Protein from Acetivibrio thermocellus DSM1313)
Clostridium thermocellum RNA polymerase transcription open complex with SigI6 and its promoter
Resolution: 3.36 Å
EM Method: Single-particle
Fitted PDBs: 8i24
Q-score: 0.548
Li J, Zhang H, Li D, Liu YJ, Bayer EA, Cui Q, Feng Y, Zhu P
Nat Commun (2023) 14 pp. 6455-6455 [ Pubmed: 37833284 DOI: doi:10.1038/s41467-023-41796-4 ]
- Rna polymerase sigma factor sigi6 (30 kDa, Protein from Acetivibrio thermocellus DSM 1313)
- Dna (80-mer) (24 kDa, DNA from Acetivibrio thermocellus)
- Magnesium ion (24 Da, Ligand)
- Dna-directed rna polymerase subunit beta (140 kDa, Protein from Acetivibrio thermocellus DSM 1313)
- Dna-directed rna polymerase subunit alpha (35 kDa, Protein from Acetivibrio thermocellus DSM 1313)
- Dna-directed rna polymerase subunit beta' (132 kDa, Protein from Acetivibrio thermocellus DSM 1313)
- Dna (80-mer) (24 kDa, DNA from Acetivibrio thermocellus)
- Zinc ion (65 Da, Ligand)
- Clostridium thermocellum rna polymerase transcription open complex with sigi6 and its promoter (30 kDa, Complex from Acetivibrio thermocellus DSM 1313)
- Dna-directed rna polymerase subunit omega (8 kDa, Protein from Acetivibrio thermocellus DSM 1313)
Chromatin fibers of frog erythrocyte nuclei in 110 mM PBS buffer (diluted by H2O) with VPP