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Native Photosystem I of Chlamydomonas reinhardtii
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 7wyi
Q-score: 0.39
Gerle C, Misumi Y, Kawamoto A, Tanaka H, Kubota-Kawai H, Tokutsu R, Kim E, Chorev D, Abe K, Robinson CV, Mitsuoka K, Minagawa J, Kurisu G
Biochim Biophys Acta Bioenerg (2023) 1864 pp. 148986-148986 [ DOI: doi:10.1016/j.bbabio.2023.148986 Pubmed: 37270022 ]
- Native photosystem i with bound light harvesting complex i from chlamydomonas reinhardtii thylakoid membranes. (765 kDa, Complex from Chlamydomonas reinhardtii)
- Chlorophyll a (893 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (23 kDa, Protein from Chlamydomonas reinhardtii)
- Chlorophyll a-b binding protein, chloroplastic (23 kDa, Protein from Chlamydomonas reinhardtii)
- Photosystem i iron-sulfur center (8 kDa, Protein from Chlamydomonas reinhardtii)
- Photosystem i reaction center subunit ix (4 kDa, Protein from Chlamydomonas reinhardtii)
- Chlorophyll a-b binding protein, chloroplastic (27 kDa, Protein from Chlamydomonas reinhardtii)
- Photosystem i reaction center subunit iii, chloroplastic (24 kDa, Protein from Chlamydomonas reinhardtii)
- Photosystem i p700 chlorophyll a apoprotein a1 (83 kDa, Protein from Chlamydomonas reinhardtii)
- Chlorophyll b (907 Da, Ligand)
- Chlorophyll a isomer (893 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (28 kDa, Protein from Chlamydomonas reinhardtii)
- Iron/sulfur cluster (351 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (28 kDa, Protein from Chlamydomonas reinhardtii)
- Photosystem i p700 chlorophyll a apoprotein a2 (82 kDa, Protein from Chlamydomonas reinhardtii)
- Chlorophyll a-b binding protein, chloroplastic (32 kDa, Protein from Chlamydomonas reinhardtii)
- Chlorophyll a-b binding protein, chloroplastic (25 kDa, Protein from Chlamydomonas reinhardtii)
- Chlorophyll a-b binding protein, chloroplastic (26 kDa, Protein from Chlamydomonas reinhardtii)
- Phylloquinone (450 Da, Ligand)
- Photosystem i reaction center subunit ii, chloroplastic (21 kDa, Protein from Chlamydomonas reinhardtii)
- Photosystem i reaction center subunit iv, chloroplastic (10 kDa, Protein from Chlamydomonas reinhardtii)
PSI-LHCI from Chlamydomonas reinhardtii with bound ferredoxin
Resolution: 4.9 Å
EM Method: Single-particle
Fitted PDBs: 7wzn
Q-score: 0.295
Gerle C, Misumi Y, Kawamoto A, Tanaka H, Kubota-Kawai H, Tokutsu R, Kim E, Chorev D, Abe K, Robinson CV, Mitsuoka K, Minagawa J, Kurisu G
Biochim Biophys Acta Bioenerg (2023) 1864 pp. 148986-148986 [ DOI: doi:10.1016/j.bbabio.2023.148986 Pubmed: 37270022 ]
- Chlorophyll a (893 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (23 kDa, Protein from Chlamydomonas reinhardtii)
- Chlorophyll a-b binding protein, chloroplastic (23 kDa, Protein from Chlamydomonas reinhardtii)
- Photosystem i from chlamydomonas reinhardtii with bound ferredoxin. (785 kDa, Complex)
- Photosystem i iron-sulfur center (8 kDa, Protein from Chlamydomonas reinhardtii)
- Photosystem i reaction center subunit ix (4 kDa, Protein from Chlamydomonas reinhardtii)
- Chlorophyll a-b binding protein, chloroplastic (27 kDa, Protein from Chlamydomonas reinhardtii)
- Photosystem i reaction center subunit iii, chloroplastic (24 kDa, Protein from Chlamydomonas reinhardtii)
- Photosystem i p700 chlorophyll a apoprotein a1 (83 kDa, Protein from Chlamydomonas reinhardtii)
- Chlorophyll b (907 Da, Ligand)
- Chlorophyll a isomer (893 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (28 kDa, Protein from Chlamydomonas reinhardtii)
- Iron/sulfur cluster (351 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (28 kDa, Protein from Chlamydomonas reinhardtii)
- Photosystem i p700 chlorophyll a apoprotein a2 (82 kDa, Protein from Chlamydomonas reinhardtii)
- Ferredoxin, chloroplastic (13 kDa, Protein from Chlamydomonas reinhardtii)
- Chlorophyll a-b binding protein, chloroplastic (32 kDa, Protein from Chlamydomonas reinhardtii)
- Chlorophyll a-b binding protein, chloroplastic (25 kDa, Protein from Chlamydomonas reinhardtii)
- Chlorophyll a-b binding protein, chloroplastic (26 kDa, Protein from Chlamydomonas reinhardtii)
- Membrane supercomplex (Complex from Chlamydomonas reinhardtii)
- Ferredoxin (Complex from Chlamydomonas reinhardtii)
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- Phylloquinone (450 Da, Ligand)
- Photosystem i reaction center subunit ii, chloroplastic (21 kDa, Protein from Chlamydomonas reinhardtii)
- Photosystem i reaction center subunit iv, chloroplastic (10 kDa, Protein from Chlamydomonas reinhardtii)
Resolution: 2.84 Å
EM Method: Single-particle
Fitted PDBs: 7dz7
Q-score: 0.567
Pan X, Tokutsu R, Li A, Takizawa K, Song C, Murata K, Yamasaki T, Liu Z, Minagawa J, Li M
Nat Plants (2021) 7 pp. 1119-1131 [ DOI: doi:10.1038/s41477-021-00960-8 Pubmed: 34239095 ]
- Chlorophyll a (893 Da, Ligand)
- Photosystem i reaction center subunit psak, chloroplastic (11 kDa, Protein from Chlamydomonas smithii)
- Photosystem i subunit o (13 kDa, Protein from Chlamydomonas smithii)
- Photosystem i reaction center subunit ix (4 kDa, Protein from Chlamydomonas smithii)
- Photosystem i p700 chlorophyll a apoprotein a1 (83 kDa, Protein from Chlamydomonas smithii)
- Photosystem i reaction center subunit ii, chloroplastic (21 kDa, Protein from Chlamydomonas smithii)
- Chlorophyll a-b binding protein, chloroplastic (28 kDa, Protein from Chlamydomonas smithii)
- Chlorophyll a-b binding protein, chloroplastic (27 kDa, Protein from Chlamydomonas smithii)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Photosystem i reaction center subunit iv, chloroplastic (10 kDa, Protein from Chlamydomonas smithii)
- Chlorophyll a-b binding protein, chloroplastic (32 kDa, Protein from Chlamydomonas smithii)
- Chlorophyll a-b binding protein, chloroplastic (28 kDa, Protein from Chlamydomonas smithii)
- (1r,3r)-6-{(3e,5e,7e,9e,11e,13e,15e,17e)-18-[(1s,4r,6r)-4-hydroxy-2,2,6-trimethyl-7-oxabicyclo[4.1.0]hept-1-yl]-3,7,12,16-tetramethyloctadeca-1,3,5,7,9,11,13,15,17-nonaenylidene}-1,5,5-trimethylcyclohexane-1,3-diol (600 Da, Ligand)
- Chlorophyll b (907 Da, Ligand)
- Photosystem i reaction center subunit v, chloroplastic (13 kDa, Protein from Chlamydomonas smithii)
- Chlorophyll a-b binding protein, chloroplastic (27 kDa, Protein from Chlamydomonas smithii)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- State transition complex psi-lhci-lhcii from green algae (Complex from Chlamydomonas reinhardtii)
- Iron/sulfur cluster (351 Da, Ligand)
- Photosystem i iron-sulfur center (8 kDa, Protein from Chlamydomonas smithii)
- Psi subunit v (20 kDa, Protein from Chlamydomonas smithii)
- Photosystem i reaction center subunit viii (10 kDa, Protein from Chlamydomonas smithii)
- Photosystem i reaction center subunit vi, chloroplastic (14 kDa, Protein from Chlamydomonas smithii)
- Chlorophyll a-b binding protein, chloroplastic (26 kDa, Protein from Chlamydomonas smithii)
- Chlorophyll a-b binding protein, chloroplastic (26 kDa, Protein from Chlamydomonas smithii)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Beta-carotene (536 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (25 kDa, Protein from Chlamydomonas smithii)
- Chlorophyll a-b binding protein, chloroplastic (23 kDa, Protein from Chlamydomonas smithii)
- Photosystem i p700 chlorophyll a apoprotein a2 (82 kDa, Protein from Chlamydomonas smithii)
- Chlorophyll a-b binding protein, chloroplastic (22 kDa, Protein from Chlamydomonas smithii)
- Chlorophyll a-b binding protein, chloroplastic (27 kDa, Protein from Chlamydomonas smithii)
- Dodecyl-alpha-d-maltoside (510 Da, Ligand)
- Phylloquinone (450 Da, Ligand)
- (3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
- Photosystem i reaction center subunit iii, chloroplastic (24 kDa, Protein from Chlamydomonas smithii)
- (3s,5r,6s,3's,5'r,6's)-5,6,5',6'-diepoxy-5,6,5',6'- tetrahydro-beta,beta-carotene-3,3'-diol (600 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (26 kDa, Protein from Chlamydomonas smithii)
- Chlorophyll a-b binding protein, chloroplastic (28 kDa, Protein from Chlamydomonas smithii)
Resolution: 3.16 Å
EM Method: Single-particle
Fitted PDBs: 7dz8
Q-score: 0.518
Pan X, Tokutsu R, Li A, Takizawa K, Song C, Murata K, Yamasaki T, Liu Z, Minagawa J, Li M
Nat Plants (2021) 7 pp. 1119-1131 [ DOI: doi:10.1038/s41477-021-00960-8 Pubmed: 34239095 ]
- Chlorophyll a (893 Da, Ligand)
- Photosystem i reaction center subunit psak, chloroplastic (11 kDa, Protein from Chlamydomonas smithii)
- Photosystem i subunit o (13 kDa, Protein from Chlamydomonas smithii)
- Photosystem i reaction center subunit ix (4 kDa, Protein from Chlamydomonas smithii)
- Photosystem i p700 chlorophyll a apoprotein a1 (83 kDa, Protein from Chlamydomonas smithii)
- Photosystem i reaction center subunit ii, chloroplastic (21 kDa, Protein from Chlamydomonas smithii)
- Chlorophyll a-b binding protein, chloroplastic (28 kDa, Protein from Chlamydomonas smithii)
- Chlorophyll a-b binding protein, chloroplastic (27 kDa, Protein from Chlamydomonas smithii)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Photosystem i reaction center subunit iv, chloroplastic (10 kDa, Protein from Chlamydomonas smithii)
- Chlorophyll a-b binding protein, chloroplastic (32 kDa, Protein from Chlamydomonas smithii)
- Chlorophyll a-b binding protein, chloroplastic (28 kDa, Protein from Chlamydomonas smithii)
- (1r,3r)-6-{(3e,5e,7e,9e,11e,13e,15e,17e)-18-[(1s,4r,6r)-4-hydroxy-2,2,6-trimethyl-7-oxabicyclo[4.1.0]hept-1-yl]-3,7,12,16-tetramethyloctadeca-1,3,5,7,9,11,13,15,17-nonaenylidene}-1,5,5-trimethylcyclohexane-1,3-diol (600 Da, Ligand)
- Chlorophyll b (907 Da, Ligand)
- Photosystem i reaction center subunit v, chloroplastic (13 kDa, Protein from Chlamydomonas smithii)
- Chlorophyll a-b binding protein, chloroplastic (27 kDa, Protein from Chlamydomonas smithii)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- State transition complex psi-lhci-lhcii from green algae (Complex from Chlamydomonas reinhardtii)
- Iron/sulfur cluster (351 Da, Ligand)
- Photosystem i iron-sulfur center (8 kDa, Protein from Chlamydomonas smithii)
- Psi subunit v (20 kDa, Protein from Chlamydomonas smithii)
- Photosystem i reaction center subunit viii (10 kDa, Protein from Chlamydomonas smithii)
- Photosystem i reaction center subunit vi, chloroplastic (14 kDa, Protein from Chlamydomonas smithii)
- Chlorophyll a-b binding protein, chloroplastic (26 kDa, Protein from Chlamydomonas smithii)
- Chlorophyll a-b binding protein, chloroplastic (26 kDa, Protein from Chlamydomonas smithii)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Beta-carotene (536 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (25 kDa, Protein from Chlamydomonas smithii)
- Chlorophyll a-b binding protein, chloroplastic (23 kDa, Protein from Chlamydomonas smithii)
- Photosystem i p700 chlorophyll a apoprotein a2 (82 kDa, Protein from Chlamydomonas smithii)
- Chlorophyll a-b binding protein, chloroplastic (22 kDa, Protein from Chlamydomonas smithii)
- Dodecyl-alpha-d-maltoside (510 Da, Ligand)
- Phylloquinone (450 Da, Ligand)
- (3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
- Photosystem i reaction center subunit iii, chloroplastic (24 kDa, Protein from Chlamydomonas smithii)
- (3s,5r,6s,3's,5'r,6's)-5,6,5',6'-diepoxy-5,6,5',6'- tetrahydro-beta,beta-carotene-3,3'-diol (600 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (26 kDa, Protein from Chlamydomonas smithii)
- Chlorophyll a-b binding protein, chloroplastic (28 kDa, Protein from Chlamydomonas smithii)
Resolution: 3.75 Å
EM Method: Single-particle
Fitted PDBs: 7e0h
Q-score: 0.388
Pan X, Tokutsu R, Li A, Takizawa K, Song C, Murata K, Yamasaki T, Liu Z, Minagawa J, Li M
Nat Plants (2021) 7 pp. 1119-1131 [ DOI: doi:10.1038/s41477-021-00960-8 Pubmed: 34239095 ]
- Chlorophyll a-b binding protein, chloroplastic (26 kDa, Protein from Chlamydomonas reinhardtii)
- State transition complex psi-lhci-lhcii from green algae (Complex from Chlamydomonas reinhardtii)
- Chlorophyll a (893 Da, Ligand)
- (3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
- (1r,3r)-6-{(3e,5e,7e,9e,11e,13e,15e,17e)-18-[(1s,4r,6r)-4-hydroxy-2,2,6-trimethyl-7-oxabicyclo[4.1.0]hept-1-yl]-3,7,12,16-tetramethyloctadeca-1,3,5,7,9,11,13,15,17-nonaenylidene}-1,5,5-trimethylcyclohexane-1,3-diol (600 Da, Ligand)
- Chlorophyll b (907 Da, Ligand)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (27 kDa, Protein from Chlamydomonas reinhardtii)
- (3s,5r,6s,3's,5'r,6's)-5,6,5',6'-diepoxy-5,6,5',6'- tetrahydro-beta,beta-carotene-3,3'-diol (600 Da, Ligand)
Resolution: 3.53 Å
EM Method: Single-particle
Fitted PDBs: 7e0i
Q-score: 0.429
Pan X, Tokutsu R, Li A, Takizawa K, Song C, Murata K, Yamasaki T, Liu Z, Minagawa J, Li M
Nat Plants (2021) 7 pp. 1119-1131 [ DOI: doi:10.1038/s41477-021-00960-8 Pubmed: 34239095 ]
- (1r,3r)-6-{(3e,5e,7e,9e,11e,13e,15e,17e)-18-[(1s,4r,6r)-4-hydroxy-2,2,6-trimethyl-7-oxabicyclo[4.1.0]hept-1-yl]-3,7,12,16-tetramethyloctadeca-1,3,5,7,9,11,13,15,17-nonaenylidene}-1,5,5-trimethylcyclohexane-1,3-diol (600 Da, Ligand)
- State transition complex psi-lhci-lhcii from green algae (Complex from Chlamydomonas reinhardtii)
- Chlorophyll a (893 Da, Ligand)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- (3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (26 kDa, Protein from Chlamydomonas smithii)
- Chlorophyll b (907 Da, Ligand)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- (3s,5r,6s,3's,5'r,6's)-5,6,5',6'-diepoxy-5,6,5',6'- tetrahydro-beta,beta-carotene-3,3'-diol (600 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (28 kDa, Protein from Chlamydomonas smithii)
- Chlorophyll a-b binding protein, chloroplastic (27 kDa, Protein from Chlamydomonas smithii)
Resolution: 3.13 Å
EM Method: Single-particle
Fitted PDBs: 7e0j
Q-score: 0.544
Pan X, Tokutsu R, Li A, Takizawa K, Song C, Murata K, Yamasaki T, Liu Z, Minagawa J, Li M
Nat Plants (2021) 7 pp. 1119-1131 [ DOI: doi:10.1038/s41477-021-00960-8 Pubmed: 34239095 ]
- (1r,3r)-6-{(3e,5e,7e,9e,11e,13e,15e,17e)-18-[(1s,4r,6r)-4-hydroxy-2,2,6-trimethyl-7-oxabicyclo[4.1.0]hept-1-yl]-3,7,12,16-tetramethyloctadeca-1,3,5,7,9,11,13,15,17-nonaenylidene}-1,5,5-trimethylcyclohexane-1,3-diol (600 Da, Ligand)
- State transition complex psi-lhci-lhcii from green algae (Complex from Chlamydomonas reinhardtii)
- Chlorophyll a (893 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (27 kDa, Protein from Chlamydomonas smithii)
- (3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (26 kDa, Protein from Chlamydomonas smithii)
- Chlorophyll b (907 Da, Ligand)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- (3s,5r,6s,3's,5'r,6's)-5,6,5',6'-diepoxy-5,6,5',6'- tetrahydro-beta,beta-carotene-3,3'-diol (600 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (27 kDa, Protein from Chlamydomonas smithii)
Resolution: 3.09 Å
EM Method: Single-particle
Fitted PDBs: 7e0k
Q-score: 0.566
Pan X, Tokutsu R, Li A, Takizawa K, Song C, Murata K, Yamasaki T, Liu Z, Minagawa J, Li M
Nat Plants (2021) 7 pp. 1119-1131 [ DOI: doi:10.1038/s41477-021-00960-8 Pubmed: 34239095 ]
- (1r,3r)-6-{(3e,5e,7e,9e,11e,13e,15e,17e)-18-[(1s,4r,6r)-4-hydroxy-2,2,6-trimethyl-7-oxabicyclo[4.1.0]hept-1-yl]-3,7,12,16-tetramethyloctadeca-1,3,5,7,9,11,13,15,17-nonaenylidene}-1,5,5-trimethylcyclohexane-1,3-diol (600 Da, Ligand)
- Chlorophyll a (893 Da, Ligand)
- Lhcii-2 in the state transition complex psi-lhci-lhcii from pph1;pbcp mutant of chlamydomonas reinhardtii (Complex from Chlamydomonas reinhardtii)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- (3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (26 kDa, Protein from Chlamydomonas smithii)
- Chlorophyll b (907 Da, Ligand)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- (3s,5r,6s,3's,5'r,6's)-5,6,5',6'-diepoxy-5,6,5',6'- tetrahydro-beta,beta-carotene-3,3'-diol (600 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (28 kDa, Protein from Chlamydomonas smithii)
- Chlorophyll a-b binding protein, chloroplastic (27 kDa, Protein from Chlamydomonas smithii)
Cryo-EM map of Chlamydomonas reinhardtii PSII-LHCII supercomplex at 5.8A resolution
Burton-Smith RN, Watanabe A, Tokutsu R, Song C, Murata K, Minagawa J
J Biol Chem (2019) 294 pp. 15003-15013 [ DOI: doi:10.1074/jbc.RA119.009341 Pubmed: 31420447 ]
Cryo-EM map of Chlamydomonas reinhardtii PSI-LHCI supercomplex at 6.9A resolution
Kubota-Kawai H, Burton-Smith RN, Tokutsu R, Song C, Akimoto S, Yokono M, Ueno Y, Kim E, Watanabe A, Murata K, Minagawa J
J Biol Chem (2019) 294 pp. 4304-4314 [ DOI: doi:10.1074/jbc.RA118.006536 Pubmed: 30670590 ]