Structure of baseplate with receptor binding complex of Agrobacterium phage Milano
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 8fqc
Q-score: 0.498
Sonani RR, Palmer LK, Esteves NC, Horton AA, Sebastian AL, Kelly RJ, Wang F, Kreutzberger MAB, Russell WK, Leiman PG, Scharf BE, Egelman EH
Nat Commun (2024) 15 pp. 756-756 [ Pubmed: 38272938 DOI: doi:10.1038/s41467-024-44959-z ]
- Tail spike protein, gp124 (61 kDa, Protein from Agrobacterium phage Milano)
- Baseplate wedge 1, gp28 (19 kDa, Protein from Agrobacterium phage Milano)
- Short tail fibers, gp31 (31 kDa, Protein from Agrobacterium phage Milano)
- Baseplate wedge 2 protein, gp29 (43 kDa, Protein from Agrobacterium phage Milano)
- Baseplate hub protein, gp26 (49 kDa, Protein from Agrobacterium phage Milano)
- Tail-tube, gp21 (14 kDa, Protein from Agrobacterium phage Milano)
- Agrobacterium phage milano (Virus from Agrobacterium phage Milano)
- Tail sheath protein, gp20 (53 kDa, Protein from Agrobacterium phage Milano)
- Baseplate central spike, gp27 (20 kDa, Protein from Agrobacterium phage Milano)
- Baseplate wedge 3 protein, gp30 (31 kDa, Protein from Agrobacterium phage Milano)
- Fe (iii) ion (55 Da, Ligand)
- Baseplate centerpiece, gp25 (43 kDa, Protein from Agrobacterium phage Milano)
Structure of Agrobacterium tumefaciens bacteriophage Milano curved tail
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 8fop
Q-score: 0.489
Sonani RR, Palmer LK, Esteves NC, Horton AA, Sebastian AL, Kelly RJ, Wang F, Kreutzberger MAB, Russell WK, Leiman PG, Scharf BE, Egelman EH
Nat Commun (2024) 15 pp. 756-756 [ Pubmed: 38272938 DOI: doi:10.1038/s41467-024-44959-z ]
- Virion-associated protein (14 kDa, Protein from Agrobacterium phage Milano)
- Tail sheath protein (53 kDa, Protein from Agrobacterium phage Milano)
- Agrobacterium phage milano (Virus from Agrobacterium phage Milano)
Structure of Agrobacterium tumefaciens bacteriophage Milano contracted tail-tube
Resolution: 3.3 Å
EM Method: Helical reconstruction
Fitted PDBs: 8fou
Q-score: 0.515
Sonani RR, Palmer LK, Esteves NC, Horton AA, Sebastian AL, Kelly RJ, Wang F, Kreutzberger MAB, Russell WK, Leiman PG, Scharf BE, Egelman EH
Nat Commun (2024) 15 pp. 756-756 [ Pubmed: 38272938 DOI: doi:10.1038/s41467-024-44959-z ]
Structure of Agrobacterium tumefaciens bacteriophage Milano contracted tail-sheath
Resolution: 2.9 Å
EM Method: Helical reconstruction
Fitted PDBs: 8foy
Q-score: 0.59
Sonani RR, Palmer LK, Esteves NC, Horton AA, Sebastian AL, Kelly RJ, Wang F, Kreutzberger MAB, Russell WK, Leiman PG, Scharf BE, Egelman EH
Nat Commun (2024) 15 pp. 756-756 [ Pubmed: 38272938 DOI: doi:10.1038/s41467-024-44959-z ]
Portal assembly of Agrobacterium phage Milano
Resolution: 3.14 Å
EM Method: Single-particle
Fitted PDBs: 8fwb
Q-score: 0.496
Sonani RR, Esteves NC, Horton AA, Kelly RJ, Sebastian AL, Wang F, Kreutzberger MAB, Leiman PG, Scharf BE, Egelman EH
Commun Biol (2023) 6 pp. 921-921 [ Pubmed: 37684529 DOI: doi:10.1038/s42003-023-05292-1 ]
Collar sheath structure of Agrobacterium phage Milano
Resolution: 2.96 Å
EM Method: Single-particle
Fitted PDBs: 8fwc
Q-score: 0.529
Sonani RR, Esteves NC, Horton AA, Kelly RJ, Sebastian AL, Wang F, Kreutzberger MAB, Leiman PG, Scharf BE, Egelman EH
Commun Biol (2023) 6 pp. 921-921 [ Pubmed: 37684529 DOI: doi:10.1038/s42003-023-05292-1 ]
Neck structure of Agrobacterium phage Milano, C3 symmetry
Resolution: 3.46 Å
EM Method: Single-particle
Fitted PDBs: 8fwe
Q-score: 0.475
Sonani RR, Esteves NC, Horton AA, Kelly RJ, Sebastian AL, Wang F, Kreutzberger MAB, Leiman PG, Scharf BE, Egelman EH
Commun Biol (2023) 6 pp. 921-921 [ Pubmed: 37684529 DOI: doi:10.1038/s42003-023-05292-1 ]
- Tail-tube, gp21 (14 kDa, Protein from Agrobacterium phage Milano)
- Agrobacterium phage milano (Virus from Agrobacterium phage Milano)
- Portal protein, gp7 (45 kDa, Protein from Agrobacterium phage Milano)
- Neck 2 protein, gp15 (16 kDa, Protein from Agrobacterium phage Milano)
- Neck 1 protein, gp14 (22 kDa, Protein from Agrobacterium phage Milano)
- Tail-terminator protein, gp18 (20 kDa, Protein from Agrobacterium phage Milano)
- Collar sheath protein, gp13 (24 kDa, Protein from Agrobacterium phage Milano)
Structure of neck and portal vertex of Agrobacterium phage Milano, C5 symmetry
Resolution: 3.45 Å
EM Method: Single-particle
Fitted PDBs: 8fwg
Q-score: 0.491
Sonani RR, Esteves NC, Horton AA, Kelly RJ, Sebastian AL, Wang F, Kreutzberger MAB, Leiman PG, Scharf BE, Egelman EH
Commun Biol (2023) 6 pp. 921-921 [ Pubmed: 37684529 DOI: doi:10.1038/s42003-023-05292-1 ]
- Linking protein 1, gp16 (22 kDa, Protein from Agrobacterium phage Milano)
- Agrobacterium phage milano (Virus from Agrobacterium phage Milano)
- Neck 1 protein, gp14 (22 kDa, Protein from Agrobacterium phage Milano)
- Linking protein 2, gp128 (3 kDa, Protein from Agrobacterium phage Milano)
- Collar sheath protein, gp13 (24 kDa, Protein from Agrobacterium phage Milano)
- Major capsid protein, gp9 (52 kDa, Protein from Agrobacterium phage Milano)
- Minor capsid protein, gp10 (14 kDa, Protein from Agrobacterium phage Milano)
Structure of tail-neck junction of Agrobacterium phage Milano
Resolution: 3.49 Å
EM Method: Single-particle
Fitted PDBs: 8fwm
Q-score: 0.427
Sonani RR, Esteves NC, Horton AA, Kelly RJ, Sebastian AL, Wang F, Kreutzberger MAB, Leiman PG, Scharf BE, Egelman EH
Commun Biol (2023) 6 pp. 921-921 [ Pubmed: 37684529 DOI: doi:10.1038/s42003-023-05292-1 ]
- Tail sheath protein (53 kDa, Protein from Agrobacterium phage Milano)
- Tail-tube, gp21 (14 kDa, Protein from Agrobacterium phage Milano)
- Agrobacterium phage milano (Virus from Agrobacterium phage Milano)
- Tail-terminator protein, gp18 (20 kDa, Protein from Agrobacterium phage Milano)
- Collar sheath protein, gp13 (24 kDa, Protein from Agrobacterium phage Milano)
Structure of capsid of Agrobacterium phage Milano
Resolution: 4.04 Å
EM Method: Single-particle
Fitted PDBs: 8fxp
Q-score: 0.333
Sonani RR, Esteves NC, Horton AA, Kelly RJ, Sebastian AL, Wang F, Kreutzberger MAB, Leiman PG, Scharf BE, Egelman EH
Commun Biol (2023) 6 pp. 921-921 [ Pubmed: 37684529 DOI: doi:10.1038/s42003-023-05292-1 ]
- Linking protein 1, gp16 (22 kDa, Protein from Agrobacterium phage Milano)
- Agrobacterium phage milano (Virus from Agrobacterium phage Milano)
- Linking protein 2, gp128 (3 kDa, Protein from Agrobacterium phage Milano)
- Major capsid protein, gp9 (52 kDa, Protein from Agrobacterium phage Milano)
- Minor capsid protein, gp10 (14 kDa, Protein from Agrobacterium phage Milano)