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RuvAB branch migration motor complexed to the Holliday junction - RuvB AAA+ state s1 [t2 dataset]
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7pbl
Q-score: 0.508
Wald J, Fahrenkamp D, Goessweiner-Mohr N, Lugmayr W, Ciccarelli L, Vesper O, Marlovits TC
Nature (2022) 609 pp. 630-639 [ Pubmed: 36002576 DOI: doi:10.1038/s41586-022-05121-1 ]
- Phosphothiophosphoric acid-adenylate ester (523 Da, Ligand)
- Random dna sequence (4 kDa, DNA from synthetic construct)
- Holliday junction atp-dependent dna helicase ruva (5 kDa, Protein from Salmonella typhimurium)
- Holliday junction atp-dependent dna helicase ruvb (35 kDa, Protein from Streptococcus thermophilus)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Random dna sequence (4 kDa, DNA from synthetic construct)
- Ruvab branch migration motor complexed to the holliday junction - ruvb motor state s1 [t2 dataset] (220 kDa, Complex from Streptococcus thermophilus)
RuvAB branch migration motor complexed to the Holliday junction - RuvB AAA+ state s2 [t2 dataset]
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7pbm
Q-score: 0.528
Wald J, Fahrenkamp D, Goessweiner-Mohr N, Lugmayr W, Ciccarelli L, Vesper O, Marlovits TC
Nature (2022) 609 pp. 630-639 [ Pubmed: 36002576 DOI: doi:10.1038/s41586-022-05121-1 ]
- Ruvab branch migration motor complexed to the holliday junction - ruvb motor state s2 [t2 dataset] (220 kDa, Complex from Streptococcus thermophilus)
- Phosphothiophosphoric acid-adenylate ester (523 Da, Ligand)
- Random dna (4 kDa, DNA from synthetic construct)
- Holliday junction atp-dependent dna helicase ruva (5 kDa, Protein from Salmonella typhimurium)
- Holliday junction atp-dependent dna helicase ruvb (35 kDa, Protein from Streptococcus thermophilus)
- Random dna (4 kDa, DNA from synthetic construct)
- Magnesium ion (24 Da, Ligand)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Holliday junction atp-dependent dna helicase ruva (5 kDa, Protein from Salmonella typhimurium)
RuvAB branch migration motor complexed to the Holliday junction - RuvB AAA+ state s3 [t2 dataset]
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7pbn
Q-score: 0.531
Wald J, Fahrenkamp D, Goessweiner-Mohr N, Lugmayr W, Ciccarelli L, Vesper O, Marlovits TC
Nature (2022) 609 pp. 630-639 [ Pubmed: 36002576 DOI: doi:10.1038/s41586-022-05121-1 ]
- Ruvab branch migration motor complexed to the holliday junction - ruvb motor state s3 [t2 dataset] (220 kDa, Complex from Streptococcus thermophilus)
- Phosphothiophosphoric acid-adenylate ester (523 Da, Ligand)
- Random dna sequence (4 kDa, DNA from synthetic construct)
- Holliday junction atp-dependent dna helicase ruva (5 kDa, Protein from Salmonella typhimurium)
- Holliday junction atp-dependent dna helicase ruvb (35 kDa, Protein from Streptococcus thermophilus)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Random dna sequence (4 kDa, DNA from synthetic construct)
- Holliday junction atp-dependent dna helicase ruva (5 kDa, Protein from Salmonella typhimurium)
RuvAB branch migration motor complexed to the Holliday junction - RuvB AAA+ state s4 [t2 dataset]
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 7pbo
Q-score: 0.524
Wald J, Fahrenkamp D, Goessweiner-Mohr N, Lugmayr W, Ciccarelli L, Vesper O, Marlovits TC
Nature (2022) 609 pp. 630-639 [ Pubmed: 36002576 DOI: doi:10.1038/s41586-022-05121-1 ]
- Phosphothiophosphoric acid-adenylate ester (523 Da, Ligand)
- Random dna (4 kDa, DNA from synthetic construct)
- Holliday junction atp-dependent dna helicase ruva (5 kDa, Protein from Salmonella typhimurium)
- Ruvab branch migration motor complexed to the holliday junction - ruvb motor state s4 [t2 dataset] (220 kDa, Complex from Streptococcus thermophilus)
- Holliday junction atp-dependent dna helicase ruvb (35 kDa, Protein from Streptococcus thermophilus)
- Random dna (4 kDa, DNA from synthetic construct)
- Magnesium ion (24 Da, Ligand)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Holliday junction atp-dependent dna helicase ruva (5 kDa, Protein from Salmonella typhimurium)
RuvAB branch migration motor complexed to the Holliday junction - RuvB AAA+ state s5 [t2 dataset]
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7pbp
Q-score: 0.528
Wald J, Fahrenkamp D, Goessweiner-Mohr N, Lugmayr W, Ciccarelli L, Vesper O, Marlovits TC
Nature (2022) 609 pp. 630-639 [ Pubmed: 36002576 DOI: doi:10.1038/s41586-022-05121-1 ]
- Phosphothiophosphoric acid-adenylate ester (523 Da, Ligand)
- Random dna (4 kDa, DNA from synthetic construct)
- Holliday junction atp-dependent dna helicase ruvb (35 kDa, Protein from Streptococcus thermophilus)
- Random dna (4 kDa, DNA from synthetic construct)
- Holliday junction atp-dependent dna helicase ruva (5 kDa, Protein from Salmonella typhimurium)
- Magnesium ion (24 Da, Ligand)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Ruvab branch migration motor complexed to the holliday junction - ruvb motor state s5 [t2 dataset] (220 kDa, Complex from Streptococcus thermophilus)
RuvAB branch migration motor complexed to the Holliday junction - RuvB AAA+ state s0+A [t2 dataset]
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 7pbq
Q-score: 0.528
Wald J, Fahrenkamp D, Goessweiner-Mohr N, Lugmayr W, Ciccarelli L, Vesper O, Marlovits TC
Nature (2022) 609 pp. 630-639 [ Pubmed: 36002576 DOI: doi:10.1038/s41586-022-05121-1 ]
- Ruvab branch migration motor complexed to the holliday junction - ruvb aaa+ state s0+a [t2 dataset] (220 kDa, Complex from Streptococcus thermophilus)
- Phosphothiophosphoric acid-adenylate ester (523 Da, Ligand)
- Random dna (4 kDa, DNA from synthetic construct)
- Holliday junction atp-dependent dna helicase ruva (5 kDa, Protein from Salmonella typhimurium)
- Holliday junction atp-dependent dna helicase ruvb (35 kDa, Protein from Streptococcus thermophilus)
- Random dna (4 kDa, DNA from synthetic construct)
- Magnesium ion (24 Da, Ligand)
- Adenosine-5'-diphosphate (427 Da, Ligand)
RuvAB branch migration motor complexed to the Holliday junction - RuvB AAA+ state s0+A [t1 dataset]
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7pbs
Q-score: 0.525
Wald J, Fahrenkamp D, Goessweiner-Mohr N, Lugmayr W, Ciccarelli L, Vesper O, Marlovits TC
Nature (2022) 609 pp. 630-639 [ Pubmed: 36002576 DOI: doi:10.1038/s41586-022-05121-1 ]
- Phosphothiophosphoric acid-adenylate ester (523 Da, Ligand)
- Ruvab branch migration motor complexed to the holliday junction - ruvb aaa+ state s0+a [t1 dataset] (220 kDa, Complex from Streptococcus thermophilus)
- Random dna (4 kDa, DNA from synthetic construct)
- Holliday junction atp-dependent dna helicase ruva (5 kDa, Protein from Salmonella typhimurium)
- Random dna (4 kDa, DNA from synthetic construct)
- Holliday junction atp-dependent dna helicase ruvb (35 kDa, Protein from Streptococcus thermophilus)
- Magnesium ion (24 Da, Ligand)
- Adenosine-5'-diphosphate (427 Da, Ligand)
RuvAB branch migration motor complexed to the Holliday junction - RuvB AAA+ state s1 [t1 dataset]
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7pbt
Q-score: 0.533
Wald J, Fahrenkamp D, Goessweiner-Mohr N, Lugmayr W, Ciccarelli L, Vesper O, Marlovits TC
Nature (2022) 609 pp. 630-639 [ Pubmed: 36002576 DOI: doi:10.1038/s41586-022-05121-1 ]
- Phosphothiophosphoric acid-adenylate ester (523 Da, Ligand)
- Random dna (4 kDa, DNA from synthetic construct)
- Ruvab branch migration motor complexed to the holliday junction - ruvb aaa+ state s1 [t1 dataset] (220 kDa, Complex from Streptococcus thermophilus)
- Holliday junction atp-dependent dna helicase ruva (5 kDa, Protein from Salmonella typhimurium)
- Holliday junction atp-dependent dna helicase ruvb (35 kDa, Protein from Streptococcus thermophilus)
- Random dna (4 kDa, DNA from synthetic construct)
- Magnesium ion (24 Da, Ligand)
- Adenosine-5'-diphosphate (427 Da, Ligand)
Cryo-EM structure of the S. typhimurium oxaloacetate decarboxylase beta-gamma sub-complex
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 6iww
Q-score: 0.434
Xu X, Shi H, Gong X, Chen P, Gao Y, Zhang X, Xiang S
eLife (2020) 9 [ Pubmed: 32459174 DOI: doi:10.7554/eLife.53853 ]
- The oxaloacetate decarboxylase beta-gamma sub-complex (Complex from Salmonella enterica subsp. enterica serovar Typhimurium)
- Oxaloacetate decarboxylase beta chain (44 kDa, Protein from Salmonella enterica subsp. enterica serovar Typhimurium)
- Probable oxaloacetate decarboxylase gamma chain (11 kDa, Protein from Salmonella enterica subsp. enterica serovar Typhimurium)
- Dodecyl-beta-d-maltoside (510 Da, Ligand)
CryoEM structure of E.coli his pause elongation complex
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 6asx
Q-score: 0.436
Kang JY, Mishanina TV, Bellecourt MJ, Mooney RA, Darst SA, Landick R
Mol Cell (2018) 69 pp. 802-815.e1 [ Pubmed: 29499135 DOI: doi:10.1016/j.molcel.2018.01.018 ]
- Dna (32-mer) (9 kDa, DNA from Salmonella enterica subsp. enterica serovar Typhimurium)
- Dna-directed rna polymerase subunit alpha (26 kDa, Protein from Escherichia coli)
- Rna (29-mer) (9 kDa, RNA from Salmonella enterica subsp. enterica serovar Typhimurium)
- Dna-directed rna polymerase subunit beta (150 kDa, Protein from Escherichia coli (strain K12))
- Dna-directed rna polymerase subunit beta' (155 kDa, Protein from Escherichia coli (strain K12))
- Zinc ion (65 Da, Ligand)
- Dna (32-mer) (9 kDa, DNA from Salmonella enterica subsp. enterica serovar Typhimurium)
- E.coli his pause elongation complex (400 kDa, Complex from Escherichia coli)
- Magnesium ion (24 Da, Ligand)
- Dna-directed rna polymerase subunit omega (9 kDa, Protein from Escherichia coli)