BamABCDE in MSP1D1 nanodisc ensemble 1-4
Resolution: 8.5 Å
EM Method: Single-particle
Fitted PDBs: 6sob
Q-score: 0.053
To Be Published
- Outer membrane protein assembly factor bamc (6 kDa, Protein from Escherichia coli)
- Outer membrane protein assembly factor bama (87 kDa, Protein from Escherichia coli)
- Outer membrane protein assembly factor bamd (25 kDa, Protein from Escherichia coli)
- Outer membrane protein assembly factor bamb (39 kDa, Protein from Escherichia coli)
- Outer membrane protein assembly factor bame (9 kDa, Protein from Escherichia coli)
- Bam complex (200 kDa, Complex from escherichia coli)
BamABCDE in MSP1D1 nanodisc ensemble 1-8
Resolution: 10.4 Å
EM Method: Single-particle
Fitted PDBs: 6soj
Q-score: 0.084
To Be Published
- Bamabcde in msp1d1 nanodisc (Complex from Escherichia coli)
- Outer membrane protein assembly factor bamc (6 kDa, Protein from Escherichia coli)
- Outer membrane protein assembly factor bama (87 kDa, Protein from Escherichia coli)
- Outer membrane protein assembly factor bamd (25 kDa, Protein from Escherichia coli)
- Outer membrane protein assembly factor bamb (39 kDa, Protein from Escherichia coli)
- Outer membrane protein assembly factor bame (9 kDa, Protein from Escherichia coli)
Cryo-EM structure of apo MlaFEDB
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 6zy2
Q-score: 0.379
Tang X, Chang S, Qiao W, Luo Q, Chen Y, Jia Z, Coleman J, Zhang K, Wang T, Zhang Z, Zhang C, Zhu X, Wei X, Dong C, Zhang X, Dong H
Nat Struct Mol Biol (2021) 28 pp. 81-91 [ Pubmed: 33199922 DOI: doi:10.1038/s41594-020-00532-y ]
- Abc transporter maintaining om lipid asymmetry, cytoplasmic stas component (Complex from Escherichia coli)
- Abc transporter maintaining om lipid asymmetry, cytoplasmic stas component (11 kDa, Protein from Escherichia coli)
- Toluene tolerance protein ttg2a (29 kDa, Protein from Escherichia coli 909945-2)
- Yrbd protein (19 kDa, Protein from Escherichia coli B185)
- Yrbd protein (Complex from Escherichia coli B185)
- Uncharacterized protein (Complex from Escherichia coli 2.3916)
- Toluene tolerance protein ttg2a (Complex from Escherichia coli 909945-2)
- Mlafedb (Complex)
- Uncharacterized protein (27 kDa, Protein from Escherichia coli 2.3916)
Cryo-EM structure of MlaFEDB in complex with phospholipid
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 6zy3
Q-score: 0.431
Tang X, Chang S, Qiao W, Luo Q, Chen Y, Jia Z, Coleman J, Zhang K, Wang T, Zhang Z, Zhang C, Zhu X, Wei X, Dong C, Zhang X, Dong H
Nat Struct Mol Biol (2021) 28 pp. 81-91 [ Pubmed: 33199922 DOI: doi:10.1038/s41594-020-00532-y ]
- Abc transporter maintaining om lipid asymmetry, cytoplasmic stas component (Complex from Escherichia coli)
- 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine (744 Da, Ligand)
- Abc transporter maintaining om lipid asymmetry, cytoplasmic stas component (11 kDa, Protein from Escherichia coli)
- Toluene tolerance protein ttg2a (29 kDa, Protein from Escherichia coli 909945-2)
- Yrbd protein (19 kDa, Protein from Escherichia coli B185)
- Yrbd protein (Complex from Escherichia coli B185)
- Uncharacterized protein (Complex from Escherichia coli 2.3916)
- Toluene tolerance protein ttg2a (Complex from Escherichia coli 909945-2)
- Mlafedb (Complex)
- Uncharacterized protein (27 kDa, Protein from Escherichia coli 2.3916)
Cryo-EM structure of MlaFEDB in complex with ADP
Resolution: 4.1 Å
EM Method: Single-particle
Fitted PDBs: 6zy4
Q-score: 0.249
Tang X, Chang S, Qiao W, Luo Q, Chen Y, Jia Z, Coleman J, Zhang K, Wang T, Zhang Z, Zhang C, Zhu X, Wei X, Dong C, Zhang X, Dong H
Nat Struct Mol Biol (2021) 28 pp. 81-91 [ Pubmed: 33199922 DOI: doi:10.1038/s41594-020-00532-y ]
- Abc transporter maintaining om lipid asymmetry, cytoplasmic stas component (Complex from Escherichia coli)
- Abc transporter maintaining om lipid asymmetry, cytoplasmic stas component (11 kDa, Protein from Escherichia coli)
- Toluene tolerance protein ttg2a (29 kDa, Protein from Escherichia coli 909945-2)
- Yrbd protein (19 kDa, Protein from Escherichia coli B185)
- Yrbd protein (Complex from Escherichia coli B185)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Uncharacterized protein (Complex from Escherichia coli 2.3916)
- Toluene tolerance protein ttg2a (Complex from Escherichia coli 909945-2)
- Mlafedb (Complex)
- Magnesium ion (24 Da, Ligand)
- Uncharacterized protein (27 kDa, Protein from Escherichia coli 2.3916)
Cryo-EM structure of MlaFEDB in complex with AMP-PNP
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 6zy9
Q-score: 0.374
Tang X, Chang S, Qiao W, Luo Q, Chen Y, Jia Z, Coleman J, Zhang K, Wang T, Zhang Z, Zhang C, Zhu X, Wei X, Dong C, Zhang X, Dong H
Nat Struct Mol Biol (2021) 28 pp. 81-91 [ Pubmed: 33199922 DOI: doi:10.1038/s41594-020-00532-y ]
- Abc transporter maintaining om lipid asymmetry, cytoplasmic stas component (Complex from Escherichia coli)
- Phosphoaminophosphonic acid-adenylate ester (506 Da, Ligand)
- Abc transporter maintaining om lipid asymmetry, cytoplasmic stas component (11 kDa, Protein from Escherichia coli)
- Toluene tolerance protein ttg2a (29 kDa, Protein from Escherichia coli 909945-2)
- Yrbd protein (19 kDa, Protein from Escherichia coli B185)
- Yrbd protein (Complex from Escherichia coli B185)
- Uncharacterized protein (Complex from Escherichia coli 2.3916)
- Toluene tolerance protein ttg2a (Complex from Escherichia coli 909945-2)
- Mlafedb (Complex)
- Magnesium ion (24 Da, Ligand)
- Uncharacterized protein (27 kDa, Protein from Escherichia coli 2.3916)
small conductance mechanosensitive channel YbiO
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 7a46
Q-score: 0.478
Flegler VJ, Rasmussen A, Rao S, Wu N, Zenobi R, Sansom MSP, Hedrich R, Rasmussen T, Bottcher B
PNAS (2020) 117 pp. 28754-28762 [ DOI: doi:10.1073/pnas.2005641117 Pubmed: 33148804 ]
- Putative transport protein (84 kDa, Protein from Escherichia coli)
- Mechanosensitive channel ybio (566 kDa, Complex from Escherichia coli)
E. coli RNAPs70-SspA-gadA DNA complex
Resolution: 3.18 Å
EM Method: Single-particle
Fitted PDBs: 6wmu
Q-score: 0.471
Travis BA, Ramsey KM, Prezioso SM, Tallo T, Wandzilak JM, Hsu A, Borgnia M, Bartesaghi A, Dove SL, Brennan RG, Schumacher MA
Mol Cell (2021) 81 pp. 139- [ Pubmed: 33217319 DOI: doi:10.1016/j.molcel.2020.10.035 ]
- E. coli rnaps70sspa-gada dna complex (Complex from Escherichia coli)
- Dna-directed rna polymerase subunit beta (150 kDa, Protein from Escherichia coli)
- Stringent starvation protein a (26 kDa, Protein from Escherichia coli TA054)
- Dna-directed rna polymerase subunit alpha (36 kDa, Protein from Escherichia coli)
- Dna t-strand (8 kDa, DNA from Escherichia coli)
- Dna-directed rna polymerase subunit beta' (158 kDa, Protein from Escherichia coli)
- Dna nt-strand (11 kDa, DNA from Escherichia coli)
- Rna polymerase sigma factor rpod (70 kDa, Protein from Escherichia coli)
- Dna nt-strand downstream (3 kDa, DNA from Escherichia coli)
- Magnesium ion (24 Da, Ligand)
- Dna-directed rna polymerase subunit omega (10 kDa, Protein from Escherichia coli)
- Zinc ion (65 Da, Ligand)
- Dna t-strand downstream (3 kDa, DNA from Escherichia coli)
Resolution: 2.5 Å
EM Method: Single-particle
Fitted PDBs: 7jy6
Q-score: 0.496
Yang H, Zhou C, Dhar A, Pavletich NP
Nature (2020) 586 pp. 801-806 [ DOI: doi:10.1038/s41586-020-2820-9 Pubmed: 33057191 ]
- Phosphothiophosphoric acid-adenylate ester (523 Da, Ligand)
- Protein reca (35 kDa, Protein from Escherichia coli)
- Dna (45-mer) (13 kDa, DNA from Escherichia coli)
- Dna (27-mer) (8 kDa, DNA from Escherichia coli)
- Magnesium ion (24 Da, Ligand)
- Ensemble of products of a strand exchange reaction with non-homologous 120 bp dsdna and atpgammas (Complex from Escherichia coli)
Structure of a 12 base pair RecA-D loop complex
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 7jy7
Q-score: 0.462
Yang H, Zhou C, Dhar A, Pavletich NP
Nature (2020) 586 pp. 801-806 [ DOI: doi:10.1038/s41586-020-2820-9 Pubmed: 33057191 ]
- Phosphothiophosphoric acid-adenylate ester (523 Da, Ligand)
- Protein reca (35 kDa, Protein from Escherichia coli)
- Dna (48-mer) (14 kDa, DNA from Escherichia coli)
- Dna (27-mer) (8 kDa, DNA from Escherichia coli)
- Dna (48-mer) (14 kDa, DNA from Escherichia coli)
- Magnesium ion (24 Da, Ligand)
- Structure of a 12 base pair reca-d loop complex. (Complex from Escherichia coli)