IF(apo/asym) conformation of CydDC in ADP+Pi(CydC)/ATP(CydD) bound state (Dataset-2)
Resolution: 3.17 Å
EM Method: Single-particle
Fitted PDBs: 7zda
Q-score: 0.534
Wu D, Mehdipour AR, Finke F, Goojani HG, Groh RR, Grund TN, Reichhart TMB, Zimmermann R, Welsch S, Bald D, Shepherd M, Hummer G, Safarian S
Nat Chem Biol (2023) 19 pp. 992-1003 [ Pubmed: 37095238 DOI: doi:10.1038/s41589-023-01314-5 ]
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Cyddc heterodimer (130 kDa, Complex from Escherichia coli)
- Atp-binding/permease protein cydc (62 kDa, Protein from Escherichia coli K-12)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Phosphite ion (78 Da, Ligand)
- Atp-binding/permease protein cydd (65 kDa, Protein from Escherichia coli K-12)
IF(heme/bound) conformation of CydDC in ADP+Pi(CydC)/ATP(CydD) bound state (Dataset-2)
Resolution: 3.35 Å
EM Method: Single-particle
Fitted PDBs: 7zdb
Q-score: 0.526
Wu D, Mehdipour AR, Finke F, Goojani HG, Groh RR, Grund TN, Reichhart TMB, Zimmermann R, Welsch S, Bald D, Shepherd M, Hummer G, Safarian S
Nat Chem Biol (2023) 19 pp. 992-1003 [ Pubmed: 37095238 DOI: doi:10.1038/s41589-023-01314-5 ]
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Cyddc heterodimer (130 kDa, Complex from Escherichia coli)
- Heme b/c (618 Da, Ligand)
- Atp-binding/permease protein cydc (62 kDa, Protein from Escherichia coli K-12)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Phosphite ion (78 Da, Ligand)
- Atp-binding/permease protein cydd (65 kDa, Protein from Escherichia coli K-12)
IF(heme/confined) conformation of CydDC in ADP(CydD) bound state (Dataset-3)
Resolution: 3.13 Å
EM Method: Single-particle
Fitted PDBs: 7zdc
Q-score: 0.574
Wu D, Mehdipour AR, Finke F, Goojani HG, Groh RR, Grund TN, Reichhart TMB, Zimmermann R, Welsch S, Bald D, Shepherd M, Hummer G, Safarian S
Nat Chem Biol (2023) 19 pp. 992-1003 [ Pubmed: 37095238 DOI: doi:10.1038/s41589-023-01314-5 ]
- Cyddc heterodimer (130 kDa, Complex from Escherichia coli)
- Heme b/c (618 Da, Ligand)
- Atp-binding/permease protein cydc (62 kDa, Protein from Escherichia coli K-12)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Atp-binding/permease protein cydd (65 kDa, Protein from Escherichia coli K-12)
IF(heme/confined) conformation of CydDC in AMP-PNP(CydD) bound state (Dataset-4)
Resolution: 2.94 Å
EM Method: Single-particle
Fitted PDBs: 7zdf
Q-score: 0.589
Wu D, Mehdipour AR, Finke F, Goojani HG, Groh RR, Grund TN, Reichhart TMB, Zimmermann R, Welsch S, Bald D, Shepherd M, Hummer G, Safarian S
Nat Chem Biol (2023) 19 pp. 992-1003 [ Pubmed: 37095238 DOI: doi:10.1038/s41589-023-01314-5 ]
- Phosphoaminophosphonic acid-adenylate ester (506 Da, Ligand)
- Cyddc heterodimer (130 kDa, Complex from Escherichia coli)
- Atp-binding/permease protein cydc (62 kDa, Protein from Escherichia coli K-12)
- {3,3'-[(9s)-8,13-diethenyl-3,7,12,17-tetramethyl-9,10-dihydroporphyrin-2,18-diyl-kappa~4~n~21~,n~22~,n~23~,n~24~]dipropanoato(2-)}iron (618 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Atp-binding/permease protein cydd (65 kDa, Protein from Escherichia coli K-12)
IF(heme/confined) conformation of CydDC (Dataset-5)
Resolution: 2.77 Å
EM Method: Single-particle
Fitted PDBs: 7zdg
Q-score: 0.607
Wu D, Mehdipour AR, Finke F, Goojani HG, Groh RR, Grund TN, Reichhart TMB, Zimmermann R, Welsch S, Bald D, Shepherd M, Hummer G, Safarian S
Nat Chem Biol (2023) 19 pp. 992-1003 [ Pubmed: 37095238 DOI: doi:10.1038/s41589-023-01314-5 ]
- Cyddc heterodimer (130 kDa, Complex from Escherichia coli)
- Atp-binding/permease protein cydd (65 kDa, Protein from Escherichia coli K-12)
- Heme b/c (618 Da, Ligand)
- Atp-binding/permease protein cydc (62 kDa, Protein from Escherichia coli K-12)
IF(apo/asym) conformation of CydDC in AMP-PNP(CydC)/AMP-PNP(CydD) bound state (Dataset-8)
Resolution: 3.01 Å
EM Method: Single-particle
Fitted PDBs: 7zdk
Q-score: 0.593
Wu D, Mehdipour AR, Finke F, Goojani HG, Groh RR, Grund TN, Reichhart TMB, Zimmermann R, Welsch S, Bald D, Shepherd M, Hummer G, Safarian S
Nat Chem Biol (2023) 19 pp. 992-1003 [ Pubmed: 37095238 DOI: doi:10.1038/s41589-023-01314-5 ]
- Phosphoaminophosphonic acid-adenylate ester (506 Da, Ligand)
- Cyddc heterodimer (130 kDa, Complex from Escherichia coli)
- Atp-binding/permease protein cydc (62 kDa, Protein from Escherichia coli K-12)
- Magnesium ion (24 Da, Ligand)
- Atp-binding/permease protein cydd (65 kDa, Protein from Escherichia coli K-12)
IF(heme/coordinated) conformation of CydDC in AMP-PNP(CydC)/AMP-PNP(CydD) bound state (Dataset-8)
Resolution: 3.35 Å
EM Method: Single-particle
Fitted PDBs: 7zdl
Q-score: 0.534
Wu D, Mehdipour AR, Finke F, Goojani HG, Groh RR, Grund TN, Reichhart TMB, Zimmermann R, Welsch S, Bald D, Shepherd M, Hummer G, Safarian S
Nat Chem Biol (2023) 19 pp. 992-1003 [ Pubmed: 37095238 DOI: doi:10.1038/s41589-023-01314-5 ]
- Phosphoaminophosphonic acid-adenylate ester (506 Da, Ligand)
- Cyddc heterodimer (130 kDa, Complex from Escherichia coli)
- Heme b/c (618 Da, Ligand)
- Atp-binding/permease protein cydc (62 kDa, Protein from Escherichia coli K-12)
- Magnesium ion (24 Da, Ligand)
- Atp-binding/permease protein cydd (65 kDa, Protein from Escherichia coli K-12)
IF(apo/as isolated) conformation of CydDC mutant (H85A.C) in AMP-PNP(CydD) bound state (Dataset-16)
Resolution: 3.05 Å
EM Method: Single-particle
Fitted PDBs: 7zdr
Q-score: 0.575
Wu D, Mehdipour AR, Finke F, Goojani HG, Groh RR, Grund TN, Reichhart TMB, Zimmermann R, Welsch S, Bald D, Shepherd M, Hummer G, Safarian S
Nat Chem Biol (2023) 19 pp. 992-1003 [ Pubmed: 37095238 DOI: doi:10.1038/s41589-023-01314-5 ]
- Phosphoaminophosphonic acid-adenylate ester (506 Da, Ligand)
- Cyddc heterodimer (130 kDa, Complex from Escherichia coli)
- Atp-binding/permease protein cydc (62 kDa, Protein from Escherichia coli K-12)
- Magnesium ion (24 Da, Ligand)
- Atp-binding/permease protein cydd (65 kDa, Protein from Escherichia coli K-12)
IF(heme/confined) conformation of CydDC mutant (E500Q.C) in AMP-PNP(CydD) bound state (Dataset-22)
Resolution: 3.35 Å
EM Method: Single-particle
Fitted PDBs: 7zdw
Q-score: 0.538
Wu D, Mehdipour AR, Finke F, Goojani HG, Groh RR, Grund TN, Reichhart TMB, Zimmermann R, Welsch S, Bald D, Shepherd M, Hummer G, Safarian S
Nat Chem Biol (2023) 19 pp. 992-1003 [ Pubmed: 37095238 DOI: doi:10.1038/s41589-023-01314-5 ]
- Phosphoaminophosphonic acid-adenylate ester (506 Da, Ligand)
- Cyddc heterodimer (130 kDa, Complex from Escherichia coli)
- Heme b/c (618 Da, Ligand)
- Atp-binding/permease protein cydc (62 kDa, Protein from Escherichia coli K-12)
- Magnesium ion (24 Da, Ligand)
- Atp-binding/permease protein cydd (65 kDa, Protein from Escherichia coli K-12)
IF(heme/confined) conformation of CydDC in ATP(CydD) bound state (Dataset-15)
Resolution: 3.05 Å
EM Method: Single-particle
Fitted PDBs: 7zec
Q-score: 0.583
Wu D, Mehdipour AR, Finke F, Goojani HG, Groh RR, Grund TN, Reichhart TMB, Zimmermann R, Welsch S, Bald D, Shepherd M, Hummer G, Safarian S
Nat Chem Biol (2023) 19 pp. 992-1003 [ Pubmed: 37095238 DOI: doi:10.1038/s41589-023-01314-5 ]
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Cyddc heterodimer (130 kDa, Complex from Escherichia coli)
- Heme b/c (618 Da, Ligand)
- Atp-binding/permease protein cydc (62 kDa, Protein from Escherichia coli K-12)
- Magnesium ion (24 Da, Ligand)
- Atp-binding/permease protein cydd (65 kDa, Protein from Escherichia coli K-12)